fam20cb (fam20c,fam20cb,LOC107669229,LOC107734234,LOC107699871,LOC105888715,LOC107731385)


Basic Information

Item Value
gene id fam20cb
gene name fam20c,fam20cb,LOC107669229,LOC107734234,LOC107699871,LOC105888715,LOC107731385
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8009380 ~ 8046039 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254223.1
AAGAAGCGAGCCTGGGCTGTCTGTCCTGCTGTTTTCAAGCTCAGCCAATCCTCTATGTGCGAGGGGCTTCAGCATCATGATATTTAACACACCCACCCTGAACATCCGACAGAGGTATTTCCTCAAGCGCCTGTCAACGGGCGAGCATCACCTTCACACGAGCTGGATGTTCAGCAAGAAACGCTGAAACTTTCTCCAAAGATCACATTTGTCGACGGGAGGAGGTGCGATGCCACACTTTCTCGAAACCTGCCAGGGCTGCCATGCGTCTCGTCGCTTTCAACGATTGAGCAGCCTCGATTTATACCGGATAAGAAGAGCGAATGAACTTGTGCAGCTGTGAAAGCGATCTCGTGCGTTGTATGAATAGCGACAGATGTTTCCTCCGCACGCCGAGATGGACCGCGGCACCGCGAACACGCACTTTTGTGGATCATTTATCTGACGAGGCTCGACTTCGTTACACCTCGCCATCGTCTGCGGCTATTAAACGTTAAAATAGACTATGAGTTGTTGTGTCGGAGATTGTTCCCGCGTCTGACCGCACGGGAGGAATTTAATCGCGAGCGCACGTAAATAACTGGATTATTGTTTCGCGTGGATGTGGATGAGCGCTTTGCTAAACAAATCCCCATTTCTGCCCCGAAGCTGGCAAATGAAAACGAAAACGTTCCATGTGTTCTTCTCACAAATTTGGGAGCCCGTGTTTTATGTACTGTTGGCGATGTAGTGCGCTTGCTCACTTTTATCCCTGCCGTTCCAAACAAGTCTTTTCTCGAACGGGAGACCCTGAAGATGATCCTCTTCAGAAAATTCCGCGTCTTGATTCTGATGGTGTTTCTCATAGCCTGCTCGATGCACATTATGATAGACTTGTTACCGAAGCTGGAGAGACGGAGCAGTAGCGCGTGCTCGTGCTCACACACACCCAGCGAAGAGCCGCAGAACTGGGCTAAGCATCGAGCCAAGCCGGGATCAGAGTCCGGCTGGCCTAATAAACACACCCTCAGAATACTTCAAGACTTCAGTAACGAGCCGAACTCAAACCTGTCGTCTCACTCGCTGGAGAAGATCATCGTTGGGGAGAGATCCGAGGCTTTGAAAAGGTTTGAGCAGTTGACAGGTGACGAGAAGAGGCACACGGCACGGGACTCTGTCTTGAAGAACGCAGCTGTCAAGGGTTCGAGGCTCTCCGCGCTGTTTGAGCATCCTTTATACACCAGGCCGTTGCCTTCTTTAACCGACGAAGACACTTTATTCAATGTCAACACTGATATAAGATTTGACCCTAAAGCTGCAGAGAACCCAGAGTGGAATGGGGAAGGTAAAGATGGGGATTATGCTCCTACGGGTGAGATGTCCTCAGACTCCTATCCAAATTGGCTCCGCTTCCACATTGGGATCAACCGGTATGAGCTTTACTCCAGGCACAACCCGGTCATAGATGCAATGCTGAAGGATCTGGTGTCGCAGAGAATTACCAGCGTTGCGATGAAATCTGGAGGCACGCAGCTGAAGCTCATCATGACATTCCAGAACTATGGCCAAGCGCTCTTCAAGCCCATGAAGCAGACACGGGAGCAGGAGACACCCCCAGACTTCTTCTACTTCTCAGATTTCGAGAGGCACAATGCTGAGATCGCAGCATATCATCTAGACAGGATTCTGGATTTCCGCCGAGTGCCGCCGGTGACTGGCCGTCTGGTGAATATGACTAAAGAGATACGAGACGTGACCCGTGACAAAAAGCTGTGGAGAACCTTTTTCATTTCACCAGCCAATAACATCTGCTTCTACGGCGAGTGTTCGTACTACTGCTCCACTGAGCATGCTCTGTGTGGGAAGCCAGACCAGATCGAGGGCTCTTTAGCAGCATTTCTGCCCGACCTGGCCTTGGCCAAGCGCAGGACCTGGAGAAACCCCTGGAGACGATCCTATCACAAACGCAAGAAAGCAGAgtgGGAGGTAGATCCAGATTACTGTGAAGAGGTGAAGCAGACACCACCCTACGACAGCGGCACGCGCCTGCTGGACATCATGGACATGACCATTTTTGATTTCCTCATGGGAAATATGGATCGTCATCATTATGAGACATTTGAAAAATTCGGAAACGAAACGTTCATTATTCACCTTGATAATGGAAGAGgcTTTGGTAAACATTCTCATGATGAGCTCTCCATACTGGTGCCTTTGAGTCAGTGCTGCAGGATGAAGAAGTCCACTCATTTACGGCTTCAGCTGTTGGCTAAGGAGGAGTTCAAACTGAGCGCTCTGATGGAGGAGAGTCTGCGAACTGATACGCTGTCGCCCATCCTCATTAGGCCTCATCTAGAGGCCATGGACCGCCGGCTGCGCCTGGTGCTCCAGGTACTGGCCGACTGCATTGAGAAGGAGGGCTACAGTAACGTAGTAGAGGAAGACCTGCTTGCGGAGGGCTGGAACACGGGCACACCTCCACAAAGGTAGTGGGCACAGACTGTTCAGGTGCCCTTTGATGTCCCTCCCCCCCGCAGCTCTATAGACCGTGAACGTCTCGCAAGAGATGCTCTTGTTGATAAACTTTTCTGAATTCAGTGAATTCCAAAGACTCGTTCCTCAACTAATGGACCGTGTGTTCAAATAAAGACACGCgggagacagagaaagagaccgTGTTCTGCAGTCCTGCGTTTAAAATGGAAGCTGAACTTCACATGTAACATCCAGCGTTGTAAAGCAGTGCTTCTCAACTGGTGGACCGTCACCTTAAAATAGGCTGATGTGGACAGCAAAGAAAAAACGacacaattaatcaaataattataataaaaataaaagtgataacagtcattattagtagtagtagtagtagtatcgcagcttataaaatacaaagcaaataataataataata

Function

symbol description
fam20cb Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in enamel mineralization and protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to colocalize with Golgi apparatus. Human ortholog(s) of this gene implicated in amelogenesis imperfecta. Orthologous to human FAM20C (FAM20C golgi associated secretory pathway kinase).
fam20c Enables manganese ion binding activity and protein serine/threonine kinase activity. Involved in biomineral tissue development and protein phosphorylation. Located in Golgi apparatus and extracellular space. Implicated in amelogenesis imperfecta. Biomarker of X-linked dominant hypophosphatemic rickets.

NR:

description
extracellular serine/threonine protein kinase FAM20C-like

GO: NA

KEGG:

id description
K21958 FAM20C; extracellular serine/threonine protein kinase FAM20C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254223.1 True 2896 mRNA 0.49 10 8009380 8046039

Neighbor

gene id symbol gene type direction distance location
LOC122355373 trrap,LOC107669193,LOC107699870,LOC107734152 coding upstream 37826 7902114 ~ 7971554 (+)
tmem130 tmem130,LOC107669166 coding upstream 118893 7886687 ~ 7890487 (+)
bhlha15 bhlha15,LOC107669184,LOC107753453,LOC107584229,LOC107594213,LOC107699868 coding upstream 154542 7851508 ~ 7854838 (+)
rsph10b LOC107669165,LOC107584188,LOC107753448 coding upstream 201770 7802834 ~ 7807610 (+)
pms2 pms2,LOC107753423,LOC107594169,LOC107724702 coding upstream 207081 7796260 ~ 7802299 (+)
foxl3 si:dkey-7e14.3,LOC107731394,LOC107594215,LOC107669190,LOC107734180,LOC107584227,LOC108431962 coding downstream 3537 8049576 ~ 8052386 (+)
noxo1b LOC107669189,LOC107734176,LOC107584122,LOC107699855,LOC107731427,LOC107594217 coding downstream 36595 8082634 ~ 8085604 (+)
rnf151 rnf151,LOC107584225,LOC107669188,LOC107594218,LOC107734173,LOC107731429,LOC107699857 coding downstream 40052 8086091 ~ 8089327 (+)
neurl2 neurl2,LOC107669209,LOC107734228,LOC107699858,LOC107594180 coding downstream 56660 8102699 ~ 8105036 (+)
meiob LOC107584223,LOC107669206,LOC107734178,LOC107731419,LOC107594203 coding downstream 61147 8107186 ~ 8110679 (+)
G86374 NA non-coding upstream 162518 7846558 ~ 7846862 (+)
G86268 NA non-coding upstream 285519 7720392 ~ 7723861 (+)
G86283 NA non-coding upstream 290097 7718984 ~ 7719283 (+)
G86275 NA non-coding upstream 307581 7701343 ~ 7701799 (+)
G86219 NA non-coding upstream 504881 7502578 ~ 7504499 (+)
G86460 NA non-coding downstream 10892 8056931 ~ 8060176 (+)
G86540 NA non-coding downstream 152055 8198094 ~ 8198410 (+)
G86536 NA non-coding downstream 157544 8203583 ~ 8204143 (+)
LOC122355856 NA non-coding downstream 158106 8204145 ~ 8206748 (+)
G86577 NA non-coding downstream 245804 8291843 ~ 8292062 (+)
LOC122355675 NA other upstream 165297 7815823 ~ 7844083 (+)
G86143 NA other upstream 701151 7307924 ~ 7308229 (+)
G86142 NA other upstream 704532 7303138 ~ 7304848 (+)
G86029 NA other upstream 1486809 6521829 ~ 6522571 (+)
G86019 LOC107570179 other upstream 1567854 6440821 ~ 6441526 (+)
msrb1b msrb1b,LOC100705913 other downstream 59109 8105148 ~ 8106780 (+)
hbbe2 hbbe2,LOC107734191,LOC105910203 other downstream 149925 8195964 ~ 8197904 (+)
arsg arsg,LOC107734203,LOC107660857,LOC107692046,LOC107554066 other downstream 790409 8836448 ~ 8852449 (+)
pkd1b LOC107723630,LOC107665861,LOC107556563 other downstream 1239624 9285663 ~ 9306831 (+)
mfsd8 mfsd8,LOC107738985,LOC107556570 other downstream 1610630 9656669 ~ 9664139 (+)

Expression


Co-expression Network