irf3


Basic Information

Item Value
gene id irf3
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 333577 ~ 338993 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254233.1
CGCTGACGTCAAAATGGGAAATCGAAACTGACACGGATTTCCCGAGTAATGTTCAACACCTGATCTTAAAACACGAACGGTTGAAGAAAGTCGAGCATTAAAGCGGCACTGGCGATAAAACCTCCCGAAGAGCTCGCCGAAGAACTCAAGAGCCCACAGAACAAACCCCTCTTTTGCTTCACACCGTTAAAGAACCGCACGTCGCTGGTTGGATCGCATCGCTATGGCTCAACCTAAACCGCTCTTCGTGCCCTGGCTGTATGAACAGATCCAGAGGGGAAGGTATCCCGGAGTGTGCTGGACCGATGAAGATCAAAGACAGTTTAGCATTCCCTGGAAGCACGCTTTAAGACAGGACTCCAGCAGTGATGATGTCCTCATATTCAAGGCGTGGGCTCAGACGAGCGCCGCCGGAGATGGCAGGATAAATGGAGATCCCTCCGTCTGGAAGAGAAACTTCCGTAGCGCTCTTCGCGCGAAAGGCTTCAAGGTGATATTTGACGACAAGAACGACGCGGCTAATCCACATAAAGTCTATCAGTTTCCATCTGAAGCTCGTTCCGCAGCGTCAGGATCTGAGGGCTCTCAGGAGACTGATttCTCGCCAGAGCTATGCGGGGAAGATAGCGACGTGTTCCCTAcacatcCACAACCAGGTTTGGAGAGAGATTTCACAGGACTAAACCTCGAGGAAAGTCCCTCACGAGTTAATGAAGTTTGGAATCCAGATCAGCTATATCTGGGGCTCGAAGATCAAGGGCCCTTCCAAGAAAGCAGTCCAGAGCTCAGCTATCAGATTACGGACACTTGTGTGCCCTTTTCTTCCCCTGAGGGCTGTGTTGGTGGTTTGGGGCAGACCTCGGCGGCTGTGTATCAAGCGGATGGAGGAGGCGTGGGTCATCACACTAGCATTCCTATGGCCAAACTGGAGACTTATTTTCGGATTAAGGTTTATTACAAAGGGAAGATGGTGAAGGAAGAGTTGGTGGAGAATGTCACCGGTTTCAGACTGATGTATCAGGAAAACATGGACGAGCTCGACTCGACGGGCGGCGATCTGGCAGTGGTCCGGCTGCCCGTTCCTGACGGTATTGTGGATCAGATCCAGGCCAAGCTCACCAATGAAATTCTGAGTAATCTGGGGGGTCTGGAGGTCAGGAGGTTGGATGGcgtggttttgggtcaccgttgGGGATTGAGCAGGATCTACTGGAGTCTATGCAAACACGAAATCAGCCAAACACCCAGAGAGCTCTCcaaaaacacacctgaagctaTCTACCTTTTCAGAGATTATATATCAGGTTTGATAGAGTTTATGCAGACAAGCCAAGAATCTCCTTCCTGCACTCTTTACTTCTTTCTGGGAGAGAAGTGGCCTGACCCCAAAATGAAGCCATGGGAGAAGAAACTCATCATGATAgagGTTAATTTGACTTCGCTGGAGGACCTGAAGACGATGGCTGTGGCGAACGGGGCGTCTTCTCTGCAGTCGGTGGAGCTCCAGCTCTCTCTGGAGCAAATGATGGAGCTGTGTTAGAGAGGTGGAGCTGCGACCGAGACGAAAGGCCTGACCTGGCTCCTGAATTCAAACGGTTTACTTAGTGGTGGACCAGtgcttaattgtatttattgaagGTGTGTGGACTTCAGTAATGGTACAAGGGAAGTGTCAGCGATTTTGAAGATAAGTTAGCAATtagaaaaagttaaaataaatgttgtttgtaaATGGTGTACATTATGATTCAAATCCAAGTCTAATGTATCTGTTTTTACACTACCACAGTGCTCTTAACAGTCTGTTTACAGTATGCTCTTTAGTCTTTTCTTGGCCTGAATCTCAAATGTTGTTTCGTGTCTTTCGTGCACTTAGCACCGTTGTCGTGCAAATCCTGGAAACCTCAGGGATTTTTATGTGTTTTCCAGGCCTAGCAACTTCTACAATGTCCTGGAAAAGTCGAGAACATTTCCATTCTACAATTCTACCATACAGTTCTATTCTTTTTTGTGCGGTTACGCTCTGTTCCAAACATTTCATTGGACAAATGTTGATTTTGAAGAGTAAAACCTGTTTGGTCAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K05411 IRF3; interferon regulatory factor 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254233.1 True 2084 mRNA 0.48 11 333577 338993

Neighbor

gene id symbol gene type direction distance location
LOC122355359 LOC107654014,LOC107664598,LOC107557378,LOC107708888 coding downstream 15048 298608 ~ 318529 (-)
LOC122355360 LOC107598582,LOC107654016,LOC107732180,LOC107708889,LOC107664586 coding downstream 35463 292041 ~ 298114 (-)
LOC122355757 LOC107557351,LOC107719532,LOC107654013,LOC107708952,LOC107598581,LOC107664606,LOC107708954 coding downstream 42922 272266 ~ 290655 (-)
LOC122355213 zgc:92313,LOC107719557,LOC107708960,LOC107664633,LOC107598673,LOC107653945,LOC107557352 coding downstream 86012 242830 ~ 247565 (-)
LOC122355215 vkorc1,LOC107719575,LOC107598672,LOC107654009,LOC108413442 coding downstream 98899 233266 ~ 234678 (-)
brsk1a si:ch211-255p10.4,LOC107598587,LOC107732176,LOC108441159,LOC108273514,LOC107654020,LOC107557374,LOC103033508,LOC108427376,LOC107658484,LOC107548343 coding upstream 24613 363606 ~ 381167 (-)
mapta LOC107598589,LOC107732173,LOC107654024,LOC107664605 coding upstream 68363 407356 ~ 434276 (-)
LOC122355175 NA coding upstream 100877 439870 ~ 444825 (-)
LOC122355758 NA coding upstream 130850 469843 ~ 477539 (-)
rbp4 rbp4,LOC107743953,LOC107664626,LOC107598599,LOC107557363,LOC107653948 coding upstream 284918 623911 ~ 626522 (-)
LOC122355220 LOC107561990,LOC107660458 non-coding downstream 134710 197400 ~ 198867 (-)
LOC122355221 LOC107561990,LOC107660458 non-coding downstream 136184 196901 ~ 197393 (-)
G84487 NA non-coding downstream 192496 140100 ~ 141081 (-)
G84492 LOC107565537,LOC107671635,LOC107690840 non-coding downstream 244003 88055 ~ 89574 (-)
LOC122355197 NA non-coding upstream 43579 382572 ~ 385022 (-)
LOC122355423 NA non-coding upstream 46896 385889 ~ 386457 (-)
G84547 NA non-coding upstream 139030 478023 ~ 478431 (-)
G84654 NA non-coding upstream 271074 610067 ~ 611847 (-)
G84666 slc35g1,si:ch211-197g18.2,LOC107598601,LOC107654036,LOC107664634,LOC107664593,LOC107557359,LOC107708939 non-coding upstream 321096 660089 ~ 663746 (-)
G84521 NA other downstream 12317 319330 ~ 321260 (-)
LOC122355191 dusp3b,LOC107753093,LOC107590411,LOC107688089,LOC107709997 other downstream 162282 168048 ~ 171295 (-)
G84486 emsy,LOC107671635,LOC107690840,LOC107722098,LOC107565537,LOC107747365 other downstream 203592 78617 ~ 129985 (-)
G84485 vaspa,LOC107722097,LOC107565535,LOC107710395,LOC107671612,LOC107575450 other downstream 210810 12045 ~ 122767 (-)
prr12a prr12a,LOC107708947,LOC107664611,LOC107598586,LOC107654018,LOC107732166 other upstream 1280 340273 ~ 360482 (-)
LOC122355759 NA other upstream 145445 484438 ~ 490379 (-)
zgc:163073 LOC107653918,LOC107732170,LOC107708955,LOC107557349,LOC107664608,LOC107598675 other upstream 157971 496964 ~ 500219 (-)
ifnphi4 LOC107653919,LOC107732171,LOC107598640,LOC107664622,LOC107708945,LOC107557348 other upstream 204253 543246 ~ 552443 (-)
dlx4b dlx4b,LOC107739765,LOC107557342,LOC107708902 other upstream 550717 889710 ~ 897517 (-)

Expression


Co-expression Network