pcgf5b (pcgf5b,LOC107584148,LOC107594155,LOC107669177,LOC107753439,LOC107758437,LOC107704022,LOC108410714)


Basic Information

Item Value
gene id pcgf5b
gene name pcgf5b,LOC107584148,LOC107594155,LOC107669177,LOC107753439,LOC107758437,LOC107704022,LOC108410714
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7527076 ~ 7538565 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254234.1
GAAAGTCCTCCGCCCCCTTCCCCATATCATCTCAAATGAAAGCAGTTCCGTATTCTGTGCCGCTACTACAACCATCACTTTCAACAGCCCAAATTCATTCAAGCCTGTTTGTAAAAATCAATGCGCATCATCAACATGGACCCATGATGTGTAAAAGGTCTGTCTTAAAGGCATGTTTAATTTTCCATGATGTCATGAAGGAAAAGAAGGCCAGGGGCCCTTCAGCAGAATACTGCAGTTGAGCCACAGAGAGGCTGAAGCTGCATTCCACTTCATCCTTACACCATCTGTTTTTCCTTCATCCCTCCTTTGGTAACTTGACAATGACATCACATAGGAAACACCTGGTGAGGGAATTCAACCATTTCATCACCTGTTATATCTGTAAAGGGTACTTGATCAAACCCACCACTGTGACAGAGTGCCTGCACACCTTTTGTAAAAGCTGTATAGTCCAGCATTTTGAGGACAGCAATGATTGCCCAAAATGTGGTATCCAGGTTCATGAAACAAATCCCTTGGAGATGTTAAGGTTGGACAACACTCTAGAAGAAGTCATTTTCAAACTTGTGCCTGATCTTCGAGAAAaggAGCAGCAGCAAGAGATTGAATTCTGGAGaagaaacaaatcaaaagaaaatcttGACGAGGATGGCCCTACATGTAAGAAGGCCAGAgtagatgaagatgatgatatTAAAGGTGATGGAGACTACCACAGGAGTGATCCACAGATAGCCATCTGTCTAGACTGCTTGCGTAACAATGGGCAGATGGGAGAGAACATTGTTAAGGGCTTAATGAAAAAATTTATTCGCTGCTCAACAAGAGTGACTGTTGGAACAATCAAGAAGTTTTTAAGTCTGAAGTTAAAGCTTCCCAGTTCTTATGAGCTAGATGTTCTATGCAATGGTGAGATCATGGGTAAAGACCACACCATGGAGTTTATCTACATGACTCGCTGGAGGCTTCGAGGAGAAAATGCCTACCCAATGGTACTTGAATATCGACCACGCATTGATTTTGGCTAGGTTGAAAAATCCTGCACTAATTTCAGCCTATGATCAGACAGCGAATTGAATGGACATGTCCAGTTCTGAAGATCTACCCATCTCTTCTGTTTAATTACTTTGCCTCATTATTGGGATCAGTTAGTGAATAGAAGCCTGCGACACTTACCGTGTGCCACAGGGATTTGTCTGTTGTTGGTTTATTTACCAAAGTGACACAAAAGTCATGTTTAAGGGCCTTTACCAATTTGAATAAGATGGtatcttctttttaaaaaaaagtcacaatataAAAATCTCAAGTATATGCGGCAGTGCCTTTTCCCATACATCATCTCATAAAGAGCTTCTGTGGACAGACATTTTATAAAGATGTTTATAAAGGTGTGTTTTTGAAGAcgttttccttttgtgttccacagaaggaACAAAGTCATAGTCAAGACAAGTTTTGAAAAACATGAGAGgtttaaatgatgacaatatgttcatatttagtGGTTTAATATTATAAGTCTCCTGATGTTTAAAGCTTTAGACTGGTTCAGAGCCTCCAAGATCCTCCAAGGTTTTTAAACTGGTCTGTTTTTGAATGCCCTCTTaagggattttatttattatatgccaTACCTCTGTGCTCACACAAATGCCTTTTCGTTTGAGGGTTTTGGTGACTTCTCTGCACATGTGCctcatttaaaaggaaaaaaaatgaaggtgaAATGAACTTAGCTAAACGCATTGAGTAGTGGTTTTACAATGTCTTCATACTTCCCTGGCATcctaattgaaaaaaaaagttgagcttTACTGTCATTGTGTCATTTTTTGGTTTATGGTTGACAGGCAATAAGTCCCCCCCTCCGTTTTAAAAACTTGGCTGTAATGTTCATAATTGCTGTTTTGAATATTGAGTCATGCTTTCCTGTTTTATGTCAGAATAcagtttttttgcagtaaattcagaatcaaaaaaatgacaaagtaaaGGAAGTATTCATGGTTTATTCTTGCAAAATAGAATTAAAGCATTTACTTGATTATATACACAGGCTTCTTGACAGTATATTAGTCTAGTCGTGTTACACCAAAGACACTCTACATCATGACCACATGGGATACATTCTAAACTGTTTGTCTTACCTTACAACTGTACTTGCAAACAGAGGCCATGTGGAAAAACTTAAGTTTGAATGTCTGTGCATGAAGCGAAAATACCTACTTTCTCAAACAGagttcagaattttttttcccctcataaATCTCCCTAAAATTGGCTTCTGACAGAATCACACTAATTCTGTTTGGAAGAAATCTAGAGCAACAAGgtcaaaaaagaagaaattattattttgcaattgTTTTCACATCAAAGAAGTTGACTCTGAATTATAAAAACTGTGTTTAAGtagaattctgaaaaatatgtGTTTAGAATAGACTTTTGAATGTCCCTGCGCTGCAATGatcaatatgtatttttgtaaagagcccttgtagatattttaaaaatggaaatctATGTTGTATGTTTAACAAACATCAAATGCTGCTTAGAATAATCTATTctatttttcaatgtaaagTCCCTGAGGTGATTCCTAGAGTTAGAAATGTGTATATGACAGTTATTGTATTTGTGAGTCTTTGTTCAGAAGAAAAATACACTCATGATTATTga
>XM_043254236.1
TGGAAAGTCCTCCGCCCCCTTCCCCATATCATCTCAAATGAAAGCAGTTCCGTATTCTGTGCCGCTACTACAACCATCACTTTCAACAGCCCAAATTCATTCAAGCCTGTTTGTAAAAATCAATGCGCATCATCAACATGGACCCATGATGTGTAAAAGGTCTGTCTTAAAGGCATGTTTAATTTTCCATGATGTCATGAAGGAAAAGAAGGCCAGGGGCCCTTCAGCAGAATACTGCAGTTGAGCCACAGAGAGGCTGAAGCTGCATTCCACTTCATCCTTACACCATCTGTTTTTCCTTCATCCCTCCTTTGGTAACTTGACAATGACATCACATAGGAAACACCTGGTGAGGGAATTCAACCATTTCATCACCTGTTATATCTGTAAAGGGTACTTGATCAAACCCACCACTGTGACAGAGTGCCTGCACACCTTTTGTAAAAGCTGTATAGTCCAGCATTTTGAGGACAGCAATGATTGCCCAAAATGTGGTATCCAGGTTCATGAAACAAATCCCTTGGAGATGTTAAGGTTGGACAACACTCTAGAAGAAGTCATTTTCAAACTTGTGCCTGATCTTCGAGAAAaggAGCAGCAGCAAGAGATTGAATTCTGGAGaagaaacaaatcaaaagaaaatcttGACGAGGATGGCCCTACATGTAAGAAGGCCAGAgtagatgaagatgatgatatTAAAGGTGATGGAGACTACCACAGGAGTGATCCACAGATAGCCATCTGTCTAGACTGCTTGCGTAACAATGGGCAGATGGGAGAGAACATTGTTAAGGGCTTAATGAAAAAATTTATTCGCTGCTCAACAAGAGTGACTGTTGGAACAATCAAGAAGTTTTTAAGTCTGAAGTTAAAGCTTCCCAGTTCTTATGAGATGTTCTATGCAATGGTGAGATCATGGGTAAAGACCACACCATGGAGTTTATCTACATGACTCGCTGGAGGCTTCGAGGAGAAAATGCCTACCCAATGGTACTTGAATATCGACCACGCATTGATTTTGGCTAGGTTGAAAAATCCTGCACTAATTTCAGCCTATGATCAGACAGCGAATTGAATGGACATGTCCAGTTCTGAAGATCTACCCATCTCTTCTGTTTAATTACTTTGCCTCATTATTGGGATCAGTTAGTGAATAGAAGCCTGCGACACTTACCGTGTGCCACAGGGATTTGTCTGTTGTTGGTTTATTTACCAAAGTGACACAAAAGTCATGTTTAAGGGCCTTTACCAATTTGAATAAGATGGtatcttctttttaaaaaaaagtcacaatataAAAATCTCAAGTATATGCGGCAGTGCCTTTTCCCATACATCATCTCATAAAGAGCTTCTGTGGACAGACATTTTATAAAGATGTTTATAAAGGTGTGTTTTTGAAGAcgttttccttttgtgttccacagaaggaACAAAGTCATAGTCAAGACAAGTTTTGAAAAACATGAGAGgtttaaatgatgacaatatgttcatatttagtGGTTTAATATTATAAGTCTCCTGATGTTTAAAGCTTTAGACTGGTTCAGAGCCTCCAAGATCCTCCAAGGTTTTTAAACTGGTCTGTTTTTGAATGCCCTCTTaagggattttatttattatatgccaTACCTCTGTGCTCACACAAATGCCTTTTCGTTTGAGGGTTTTGGTGACTTCTCTGCACATGTGCctcatttaaaaggaaaaaaaatgaaggtgaAATGAACTTAGCTAAACGCATTGAGTAGTGGTTTTACAATGTCTTCATACTTCCCTGGCATcctaattgaaaaaaaaagttgagcttTACTGTCATTGTGTCATTTTTTGGTTTATGGTTGACAGGCAATAAGTCCCCCCCTCCGTTTTAAAAACTTGGCTGTAATGTTCATAATTGCTGTTTTGAATATTGAGTCATGCTTTCCTGTTTTATGTCAGAATAcagtttttttgcagtaaattcagaatcaaaaaaatgacaaagtaaaGGAAGTATTCATGGTTTATTCTTGCAAAATAGAATTAAAGCATTTACTTGATTATATACACAGGCTTCTTGACAGTATATTAGTCTAGTCGTGTTACACCAAAGACACTCTACATCATGACCACATGGGATACATTCTAAACTGTTTGTCTTACCTTACAACTGTACTTGCAAACAGAGGCCATGTGGAAAAACTTAAGTTTGAATGTCTGTGCATGAAGCGAAAATACCTACTTTCTCAAACAGagttcagaattttttttcccctcataaATCTCCCTAAAATTGGCTTCTGACAGAATCACACTAATTCTGTTTGGAAGAAATCTAGAGCAACAAGgtcaaaaaagaagaaattattattttgcaattgTTTTCACATCAAAGAAGTTGACTCTGAATTATAAAAACTGTGTTTAAGtagaattctgaaaaatatgtGTTTAGAATAGACTTTTGAATGTCCCTGCGCTGCAATGatcaatatgtatttttgtaaagagcccttgtagatattttaaaaatggaaatctATGTTGTATGTTTAACAAACATCAAATGCTGCTTAGAATAATCTATTctatttttcaatgtaaagTCCCTGAGGTGATTCCTAGAGTTAGAAATGTGTATATGACAGTTATTGTATTTGTGAGTCTTTGTTCAGAAGAAAAATACACTCATGATTATTga

Function

symbol description
pcgf5b Predicted to enable metal ion binding activity. Predicted to be involved in histone H2A-K119 monoubiquitination and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of PRC1 complex. Is expressed in eye; gonad; and muscle. Orthologous to human PCGF5 (polycomb group ring finger 5).

NR:

description
PREDICTED: polycomb group RING finger protein 5-B

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0031519 PcG protein complex cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11489 PCGF5; polycomb group RING finger protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254234.1 True 2691 mRNA 0.37 9 7527076 7538563
XM_043254236.1 False 2689 mRNA 0.37 9 7527076 7538565

Neighbor

gene id symbol gene type direction distance location
hectd2 hectd2,LOC107584154,LOC107758436,LOC107594154,LOC107753452 coding downstream 5670 7504716 ~ 7521406 (-)
kcnj19b si:dkey-100n10.2,LOC107584158,LOC107758432,LOC107661094,LOC108424892,LOC107727700,LOC108273498 coding downstream 162061 7359383 ~ 7365015 (-)
acbd4 LOC107661095,LOC107733800,LOC107662569 coding downstream 344242 7174618 ~ 7182834 (-)
hexim1 hexim1,LOC107733802,LOC107661096,LOC107662567,LOC107561639,LOC107751667,LOC107576140 coding downstream 353708 7171396 ~ 7173368 (-)
LOC122355417 adprh,LOC108411014,LOC108274007,LOC105894051,LOC107726130,LOC106579059,LOC107571852 coding downstream 1246728 6197482 ~ 6280348 (-)
rpp30 rpp30,LOC107669172,LOC107584236,LOC107753460,LOC107758421,LOC107683719,LOC107594207 coding upstream 13567 7552132 ~ 7554852 (-)
LOC122355224 LOC107758424,LOC107594208,LOC107669182,LOC107584235,LOC107753458,LOC100536080,LOC107683721 coding upstream 34606 7573171 ~ 7578201 (-)
LOC122355798 LOC107753456,LOC107669160,LOC107584195,LOC107594195 coding upstream 66288 7604853 ~ 7608716 (-)
ifit10 LOC107584141,LOC107753434,LOC107669232,LOC107758418,LOC107594210,LOC107683722 coding upstream 70829 7609394 ~ 7611992 (-)
ifit9 LOC107669232,LOC107753434,LOC107584193 coding upstream 73570 7612135 ~ 7614367 (-)
G86232 NA non-coding downstream 4075 7522664 ~ 7523001 (-)
G86230 NA non-coding downstream 22615 7502577 ~ 7504461 (-)
G86210 LOC107758434,LOC107584156,LOC107669230,LOC107594152 non-coding downstream 40001 7480055 ~ 7487075 (-)
G86216 NA non-coding downstream 50946 7469027 ~ 7476130 (-)
G86201 NA non-coding downstream 141093 7380107 ~ 7385983 (-)
G86324 LOC107683711,LOC107669213,LOC107594157 non-coding upstream 49746 7588311 ~ 7590983 (-)
G86325 NA non-coding upstream 54236 7592801 ~ 7596998 (-)
G86330 ch25h,LOC107753436,LOC107584143,LOC107669234,LOC107683723,LOC107758440,LOC107594211 non-coding upstream 77303 7615868 ~ 7617213 (-)
G86334 NA non-coding upstream 92831 7631396 ~ 7634556 (-)
G86333 acta2,zgc:86709,actc1a,actc1,ACTC1,LOC107594158,LOC103374497,LOC108414322,LOC106531354,LOC107683715 non-coding upstream 96073 7634638 ~ 7636144 (-)
G86203 NA other downstream 138166 7388236 ~ 7388910 (-)
G86108 NA other downstream 422858 7103880 ~ 7104218 (-)
G86049 LOC101886504,LOC101886427 other downstream 855829 6670319 ~ 6671247 (-)
LOC122355418 pnmt,LOC107571312,LOC107676565 other downstream 1449008 6051168 ~ 6078068 (-)
G85930 LOC107711793,LOC107755027 other downstream 1514965 5990913 ~ 6012111 (-)
cpped1 cpped1,LOC107584109,LOC107669238,LOC107554009 other upstream 795839 8334404 ~ 8359992 (-)
LOC122355061 tnfrsf17,LOC107554040,LOC107692075,LOC107690067,LOC107584106,LOC107734209 other upstream 972838 8511403 ~ 8513265 (-)
G86783 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 other upstream 1071987 8610552 ~ 8612445 (-)
plbd1b LOC107578697 other upstream 1143878 8682443 ~ 8687548 (-)
trnar-ccu_66 NA other upstream 1148933 8687498 ~ 8687570 (-)

Expression


Co-expression Network