XLOC_006651 (ddx43)


Basic Information

Item Value
gene id XLOC_006651
gene name ddx43
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 27332656 ~ 27354033 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012839
AGTGTGTTGAGGTCTCTCGGGAGGACTTACAGTTTAGCGTTGGCTATCTCGACATCTCTGTTAACGTTTCATGTTGTTTGTTTTAGATGTCGGACTGGGAAGATGAATACGACGGAGATGGCGTGGCGGTTTCAAAGCAGTTAACGTTACCTGCTAAACCTGCGCCGGTAAAATCATGGAGGCCTCCGTCACCTCGAGGCGCGCGCAATCGAGAAACCTCCAGCGCTGGTGCAAAATTTGGCGGAGACGGAGAGCAGTGGGTGAACTGGAGGAACAGAGATTCGGATTTCGATGTCTTTGACGGTGCAGCCGGTAAAAATAACAGTTACAGTCGATCCAGGATTGGACCAACACGAAGTCGCGGTTACGCAGACCGTGGAGATTCATCATCGGTAACTCTGAACGTGGAAAACTCATTGGTCGGGAGAATAATAGGTCGAGGTGGTGCGAAAATACGAGAGCTTCAAGAGAGCAGTGGAGCATCAATAAAGATAACCCGTGGTGCACATGAAGCTGAAGTGCTCATCTGTGGAAGCTGTGATGCTCAACACAAAGCCAAAGACATGATTGAAGATCTGGTGCATGAAAATATGGGAGGTTCTGGATACCGCAATGGAAACAGCAGTCAAGGGTATCAAAATAACTCTTGTTGGTCAGCTTCTGCTGTTAAAGCGGCAGCTGCAGCTGCACCAGCACCTACCCCCATTGACTGGACTTCACTTAGAGAAAACCGGGACAAATATGAAGCTATGAAATGGCAAGATCTTCCTGTTCTAAAGAAGAATTTCTATATTGAAGCAAAATCAGTGGCTGCGCGCAGTGCTGAAGAAGTCAAGATCTGGAGAAAAGAGAACAACAATATCTTTGTGGACGATTTAAAAGATGGTGACAAAAGAACAATTCCCAATCCAGTGTGCACGTTTGAGGAAGCTTTTGCTCACTATCCTGGCATCATGGAAAACATTGTCAGAGTAGGGTTTAAAAAACCAACACCCATTCAGTCGCAGGCCTGGCCAGTCGTCCTGAATGGAATAGATCTTATTGGAATAGCCCAGACAGGAACAGGCAAAACTCTGGCCTACCTCCTTCCTGGATTCATTCATATGGATGGACAACCAATGCCCAGGGACAAAAGAAATGGCCCTGGCATGTTGGTTTTGACTCCTACTCGTGAGCTGGCCCTCCAGATCGAAGCAGAGTGCAACAAATACAGCTACAAGGGATTTAAAAGTATCTGTATCTATGGAGGAGgaggaggaggacgaaGAGGTGGTTATAGAGGAGGCTCAGACCTGCCATTCTGATCTATTGgaagGTTGATGCCACTGTACTCAATGGGTCCATAAGCTTTTAAAGTGTTAATCCTCTTATTTGTAGAGAGGCCTATAAAGTCATTGTAATTGACTATTTACGTTTTgtaaaatgattcatttatgCTTGATGTTTCTTTAatgttaaaagattttttttcctagTTCAGTAACATTATCTACATTGAAATTGGGTAAAACAAGCCTAAATGTAGGTGATGTAGCCATGTTGTTCAGTTTAATACATCAAATAAAAGCCTGTAAAA
>TCONS_00012840
AGTTTAGCGTTGGCTATCTCGACATCTCTGTTAACGTTTCATGTTGTTTGTTTTAGATGTCGGACTGGGAAGATGAATACGACGGAGATGGCGTGGCGGTTTCAAAGCAGTTAACGTTACCTGCTAAACCTGCGCCGGTAAAATCATGGAGGCCTCCGTCACCTCGAGGCGCGCGCAATCGAGAAACCTCCAGCGCTGGTGCAAAATTTGGCGGAGACGGAGAGCAGTGGGTGAACTGGAGGAACAGAGATTCGGATTTCGATGTCTTTGACGGTGCAGCCGGTAAAAATAACAGTTACAGTCGATCCAGGATTGGACCAACACGAAGTCGCGGTTACGCAGACCGTGGAGATTCATCATCGGTAACTCTGAACGTGGAAAACTCATTGGTCGGGAGAATAATAGGTCGAGGTGGTGCGAAAATACGAGAGCTTCAAGAGAGCAGTGGAGCATCAATAAAGATAACCCGTGGTGCACATGAAGCTGAAGTGCTCATCTGTGGAAGCTGTGATGCTCAACACAAAGCCAAAGACATGATTGAAGATCTGGTGCATGAAAATATGGGAGGTTCTGGATACCGCAATGGAAACAGCAGTCAAGGGTATCAAAATAACTCTTGTTGGTCAGCTTCTGCTGTTAAAGCGGCAGCTGCAGCTGCACCAGCACCTACCCCCATTGACTGGACTTCACTTAGAGAAAACCGGGACAAATATGAAGCTATGAAATGGCAAGATCTTCCTGTTCTAAAGAAGAATTTCTATATTGAAGCAAAATCAGTGGCTGCGCGCAGTGCTGAAGAAGTCAAGATCTGGAGAAAAGAGAACAACAATATCTTTGTGGACGATTTAAAAGATGGTGACAAAAGAACAATTCCCAATCCAGTGTGCACGTTTGAGGAAGCTTTTGCTCACTATCCTGGCATCATGGAAAACATTGTCAGAGTAGGGTTTAAAAAACCAACACCCATTCAGTCGCAGGCCTGGCCAGTCGTCCTGAATGGAATAGATCTTATTGGAATAGCCCAGACAGGAACAGGCAAAACTCTGGCCTACCTCCTTCCTGGATTCATTCATATGGATGGACAACCAATGCCCAGGGACAAAAGAAATGGCCCTGGCATGTTGGTTTTGACTCCTACTCGTGAGCTGGCCCTCCAGATCGAAGCAGAGTGCAACAAATACAGCTACAAGGGATTTAAAAGTATCTGTATCTATGGAGGAGGTGACCGAAATGCCCAGATTAAAGTAGTGACCAGTGGTGTGGACATTGTCATTGCAACACCTGGACGGTTAAATGATCTGCAGATGAATGAGCTCATTAATTTGCGCTCCATCACCTATTTGGTGTTGGATGAGGCTGATAGAATGTTGGACATGGGATTTGAACCTCAAATCATGAAAATCATTCTGGATATTCGACCAGACAGGCAAACGGTTATGACTAGTGCCACCTGGCCACCAGGTGTTCGGCGACTGGCCAAATCCTACCTGAAAGATCCAATGATGGTTTATGTGGGCACACTGGATCTAGCAGCAGTGAACACTGTTCAGCAAACGGTGCTGTTTGTGCAGGAGGATGAAAAAAAAGACTACGTTTTTGATTTCATTCACCGAATGGAGCCTCTGGACAAAGTACTAATATTTGTTGGAAAAAAACTCAAAGCTGACGACCTCTCCAGTGACCTGTGTCTTCAGGGTATAGCGGTACAGTCTCTGCATGGAGACCGAGAGCAATGCGACAGAGAAGAGGCCCTGCAGGACTTTAAAGATGGTCGTGTGCGTATTCTGGTGGCCACTGACCTGGCCTCCAGGGGGCTAGATGTGCATGACATCACGCATGTGTTCAACTATGATTTCCCGAGGAATGTGGAGGAGTATGTGCACCGTGTTGGGAGAACAGGTCGTGCAGGGAGGTCTGGTGAATCTGTAACCCTGGTGACTAGAGAGGATTGGAGAGTAGCAGCTGAGCTAATCACCATCCTGGAGAGATCTGGTCAGgATGTACCAGAAGAACTGGTACTAATGGCTGAGCGTTATGAAAAACACCGGAGGGAGAAAGAAATGTTTGGACCCAGGAgcggaagaggaggaggagggggagggggtggaagaggaggaggatggggaggAGGTGGGGGTGGAAGAGGAGGTGGCGGcggcggaggaggaggaggacgaaGAGGTGGTTATAGAGGAGGCTCAGACCTGCCATTCTGATCTATTGgaagGTTGATGCCACTGTACTCAATGGGTCCATAAGCTTTTAAAGTGTTAATCCTCTTATTTGTAGAGAGGCCTATAAAGTCATTGTAATTGACTATTTACGTTTTgtaaaatgattcatttatgCTTGATGTTTCTTTAatgttaaaagattttttttcctagTTCAGTAACATTATCTACATTGAAATTGGGTAAAACAAGCCTAAATGTAGGTGATGTAGCCATGTTGTTCAGTTTAATACATCAAATAAAA

Function

symbol description
ddx43 Predicted to enable RNA binding activity and RNA helicase activity. Orthologous to several human genes including DDX43 (DEAD-box helicase 43).

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003724 RNA helicase activity molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-080204-77 Predicted to enable RNA binding activity and RNA helicase activity. Orthologous to several human genes including DDX43 (DEAD-box helicase 43).

Ensembl:

ensembl_id ENSDARG00000022614

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012839 False 1576 mRNA 0.44 11 27332656 27354033
TCONS_00012840 True 2478 mRNA 0.46 17 27332666 27354003

Neighbor

gene id symbol gene type direction distance location
XLOC_006650 NA coding downstream 54947 27271338 ~ 27277709 (-)
XLOC_006649 NA coding downstream 104906 27227361 ~ 27227750 (-)
XLOC_006648 ccdc85a coding downstream 294249 27000394 ~ 27038407 (-)
XLOC_006647 vrk2 coding downstream 533412 26780004 ~ 26799244 (-)
XLOC_006646 AL627132.1 coding downstream 765472 26567066 ~ 26567184 (-)
XLOC_006652 kcnq5a coding upstream 24824 27378857 ~ 27621246 (-)
XLOC_006653 rims1a coding upstream 277893 27631926 ~ 27767443 (-)
XLOC_006654 CR356236.2 coding upstream 336127 27690160 ~ 27690276 (-)
XLOC_006655 NA coding upstream 447382 27801415 ~ 27816641 (-)
XLOC_006656 ogfrl1 coding upstream 546413 27900446 ~ 27916565 (-)
XLOC_006471 BX537274.2 misc downstream 17067751 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 26506431 825904 ~ 826225 (-)
XLOC_006644 NA non-coding downstream 628852 26009497 ~ 26703804 (-)
XLOC_006645 NA non-coding downstream 787840 26533354 ~ 26544816 (-)
XLOC_006658 CR392046.1 non-coding upstream 825401 28179434 ~ 28179550 (-)
XLOC_006661 BX950184.1 non-coding upstream 922865 28276898 ~ 28417158 (-)
XLOC_006663 NA non-coding upstream 1073444 28427477 ~ 28444818 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G75892 NA non-coding CI01000012 null 10922722 ~ 10927672 (-)