LOC122355697 (phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350)


Basic Information

Item Value
gene id LOC122355697
gene name phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8637411 ~ 8638883 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254240.1
TTTATGACTGTGTTTGTTTGGAATTTGTCCAGTGTTTCACTAACTGGCTGCATTCGTTCATTCATAATGGCAAAGCATCATCCAGATCTGATTTTTTGCAGGAAACAGGCTGGAGTTGccgTTGGAAGACAGTGTGAAAAATgtgATGGCCGATGTGTTATATGTGACTCTTACGTCAGGCCTTGTACACTGGTTCGTATTTGTGATGAATGCAACTATGGGTCTTACCAAGGACGCTGTGTGACCTGTGGAGGTCCTGGAATATCTGATGCCTACTACTGCAAAGAGTGCACCATCCAGGAGAAGGACAGGGATGGCTGCCCCAAGATCGTGAACCTCGGCAGCTCGAAGACCGACCTTTTctatgagagaaaaaaatacgGCTTCAAGAAGAGATGAAGAAGCGGAGGGATCACCATTTTAGAGGGTTTTTTACTTTGTTATCAGACTTGATACAATAAAAGATGCACACTG

Function

symbol description
phf5a Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of U12-type spliceosomal complex; U2 snRNP; and precatalytic spliceosome. Orthologous to human PHF5A (PHD finger protein 5A).

NR:

description
PREDICTED: PHD finger-like domain-containing protein 5A isoform X1

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0016363 nuclear matrix cellular_component
GO:0016607 nuclear speck cellular_component
GO:0005686 U2 snRNP cellular_component
GO:0005689 U12-type spliceosomal complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0005515 protein binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K12834 PHF5A; PHD finger-like domain-containing protein 5A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254240.1 True 474 mRNA 0.44 4 8637411 8638883

Neighbor

gene id symbol gene type direction distance location
LOC122355698 phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 coding downstream 499 8634892 ~ 8636912 (-)
cby1 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 coding downstream 24950 8611249 ~ 8612461 (-)
slc16a8 slc16a8,LOC107734169,LOC107690073,LOC107584209 coding downstream 26187 8606637 ~ 8611224 (-)
pdap1a pdap1a,LOC107734239,LOC107584100,LOC107690063,LOC107554049,LOC107731397 coding downstream 31273 8602210 ~ 8606138 (-)
sh3bp1 sh3bp1,LOC107692101,LOC107731399,LOC107690072,LOC107554025,LOC107734168,LOC107584210 coding downstream 36497 8591741 ~ 8600914 (-)
kctd17 kctd17,LOC107584096,LOC107734225,LOC107692061 coding upstream 29513 8668396 ~ 8681985 (-)
l3mbtl2 LOC107734235,LOC107584094,LOC107663177,LOC107692058,LOC107709654,LOC107554057 coding upstream 59610 8698493 ~ 8705084 (-)
cbx7b LOC107660863,LOC107734182,LOC107584093,LOC107554058,LOC107692056,LOC107709653 coding upstream 89926 8728809 ~ 8732989 (-)
josd1 josd1,LOC107660868,LOC107554019 coding upstream 94934 8733817 ~ 8738248 (-)
xrcc6 xrcc6,LOC107734244,LOC107584091,LOC107709651,LOC107554059 coding upstream 100059 8738942 ~ 8743606 (-)
G86809 LOC107731413,LOC107584098,LOC107734194,LOC107663181 non-coding downstream 7204 8627094 ~ 8630207 (-)
G86798 NA non-coding downstream 8439 8597394 ~ 8628972 (-)
G86807 NA non-coding downstream 11082 8623297 ~ 8626329 (-)
G86775 NA non-coding downstream 99205 8535973 ~ 8538206 (-)
G86608 NA non-coding downstream 292802 8344336 ~ 8344609 (-)
G86825 NA non-coding upstream 36763 8675646 ~ 8747077 (-)
G86826 NA non-coding upstream 41222 8680105 ~ 8744645 (-)
G86848 gna13a,LOC107660858,LOC107584085,LOC107734232,LOC107554062,LOC107692049 non-coding upstream 182997 8821880 ~ 8823436 (-)
G86852 arsg,LOC107734203,LOC107660857 non-coding upstream 199468 8838351 ~ 8838612 (-)
G86853 NA non-coding upstream 201931 8840814 ~ 8841155 (-)
G86783 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 other downstream 24966 8610552 ~ 8612445 (-)
LOC122355061 tnfrsf17,LOC107554040,LOC107692075,LOC107690067,LOC107584106,LOC107734209 other downstream 124146 8511403 ~ 8513265 (-)
cpped1 cpped1,LOC107584109,LOC107669238,LOC107554009 other downstream 277419 8334404 ~ 8359992 (-)
G86203 NA other downstream 1248501 7388236 ~ 7388910 (-)
G86108 NA other downstream 1533193 7103880 ~ 7104218 (-)
plbd1b LOC107578697 other upstream 43560 8682443 ~ 8687548 (-)
trnar-ccu_66 NA other upstream 48615 8687498 ~ 8687570 (-)
LOC122355288 LOC107660874 other upstream 236734 8875617 ~ 8878131 (-)
thrab thrab,LOC107584392,LOC107733455,LOC107657272,LOC108430158,LOC107665883,LOC107723634 other upstream 672770 9311653 ~ 9939849 (-)
ormdl3 ormdl3,LOC107723636,LOC107657273,LOC107556587,LOC108273759,LOC102217224,LOC106521946,LOC102783025,LOC105936292,LOC107092838 other upstream 842676 9481559 ~ 9489312 (-)

Expression


Co-expression Network