aco2 (aco2,LOC107734200,LOC107584097,LOC107731401,LOC107554054,LOC107692062,LOC108273913)


Basic Information

Item Value
gene id aco2
gene name aco2,LOC107734200,LOC107584097,LOC107731401,LOC107554054,LOC107692062,LOC108273913
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8640650 ~ 8649914 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254244.1
GAGTTCTTATACCCGCACGTCATCTTCTAGCGTCACATCTTTGTCAGTGAACAAAATGGCAACCTACTGCATAACCGTCGCCCGGCTTCAGctcGCTCTGGGTCAGGGTGCTCGACGTTTTCATGTGGCGGCAGCTCTCAACGCAAAGGCCAAGGTGGCCATGAGCCGCTTTGAGCCAAACTCTTACGTCAACTATGACAAGCTTCGCTCAAATATTGACATTGTGCGCAAAAGACTCAACCGGCCACTCACTCTGTCAGAAAAGATTGTCTATGGCCATCTGGATGACCCGGCTGGACAGGAAATTGTTCGAGGGCGCACATACTTGCGTCTGCGACCCGATCGCGTTGCCATGCAGGATGCAACAGCACAGATGGCCATGCTGCAGTTCATCAGCAGCGGACTCCCAAGAGTGGCAGTGCCGTCCACCATCCACTGTGACCATCTTATCGAGGCCCAGATCGGAGGAGCCCAGGATCTACAGAAGGCAAAGGAAGTGAATCAAGAGGTTTACAACTTCTTGGCTAGTGCTGGTGCTAAATATGGTGTCGGCTTTTGGAAACCTGGCTCTGGGATCATCCATCAGaTTATCTTGGAGAACTATGCGTACCCTGGAGTCATGTTGATCGGTACAGACTCTCACACCCCTAATGGTGGTGGTCTGGGCTGCATCTGCATTGGAGTTGGTGGAGCTGATGCTGTTGATGTCATGGCAGGAATCCCCTGGGAGCTGAAGTGTCCAAACGTCATCGGTGTGAAATTGACAGGCACGTTATCTGGCTGGAGCTCACCAAAGGATGTCATCCTTAAAGTGGCTGGTATTTTGACTGTGAAGGGTGGTACTGGTGCCATTGTGGAGTACCATGGCCCTGGTGTGGACTCTATCTCCTGCACAGGAATGGCCACCATCTGTAATATGGGTGCTGAAATTGGAGCCACCACTTCTGTATTCCCTTTCAACCACCGTATGAAGACATACTTGGAGAAGACGGGTCGTGGAGAAATCGCTGCTTCAGCAAATGAGAACCAAGATCTGCTGGTACCTGACTCAGGATGTCATTATGACCAGATAATTGAGATTAATCTAAGTGAGCTGAAGCCTCACATCAATGGCCCATTTACTCCTGATCTGGCTCACCCCGTTTCAGACATCGGCTCTGTTGCGGAGAAGAATGGCTGGCCCCTGGACGTTAAAGTTGGGCTAATTGGAAGCTGCACCAACTCCAGTTATGAGGACATGGGCAGAGCTGCCTCCTTGGCCAAACAAGCACTTGACAAAGGACTCAAATGCAAAGCCCAGTTCACAGTCACCCCTGGGTCTGAGCAGATTCGTGCCACAATTGAGCGAGATGGTTATGCTAAAGTGTTGAGGGATGTTGGTGGGGTTGTCCTGGCTAATGCCTGTGGACCCTGCATCGGTCAATGGGACAGGCGTGATGTTAAAAAGGGAGAAAAGAACACCATTGTTACATCATTCAACAGAAACTTTACAGCCAGAAATGATGCTAACCCTGCCACTCATGCTTTTGTTACTTCTCCAGAGATCGTCACAGCCCTTGCCATCGCAGGCACCCTGAAGTTCAACCCTGAGACTGACTTCCTCACAGCCCCCAACGGAGAGAAGTTTAAACTGGTGCCGCCCACAGGAGATGAGCTTCCTTCCCGGGACTTTGACCCAGGTCAGGACACTTACCAGCACCCACCAGCTGATGGGACTGGCCTGAAAGTAGATGTCAACCCTCAGAGCAACCGACTACAGCTGCTTGAGCCCTTCGACAAATGGAGTGGAAATGACCTTGAAGACCTCCAAGTGCTCATCAAGGTGAAAGGAAAGTGCACCACTGACCACATCAGCGCTGCCGGACCTTGGCTTAAGTTCCGTGGCCACCTTGATAACATTTCCAATAACCTGCTCATTGGTGCCGTTAACATTGAAAACGATGCCGTCAATAAAATTCGCAACCTCCTGACTGGAGAGTTTGGTGGTGTTCCTGATGTTGCTCGCCATTACAAAAAGCACAGTGTTTCGTGGGTAGTTGTGGGAGATGAGAACTACGGTGAAGGTTCCAGCAGAGAGCATGCTGCTCTGGAGCCCAGACATTTAGGAGGAAGGGCCATTATTGTGAAGAGCTTTGCTAGAATCCACGAAACTAATTTGAAGAAACAGGGCCTGTTGCCCCTCACCTTCTCCAACCCTGCTGATTACGACAAAATCCGCCCAGATGATAAAATCAATATTGTAGGGCTTAAGAGTTTTGCCCCTGGAAAGTCCCTACAGGCCGTCATCAAGCACAGTGATGGGAGCTCAGAAACCATTGAGTTAAACCACACCTTCAACGAAACCCAGATCGAATGGTTCCAGGCTGGCTCCGCCCTCAACAGAATGAAGGAGCTGCAGAAATGAGCTTGTTAgggtataaatatacatatttggGAGGGGAAAGGGTTATGCATCAAACAGGAGGATATGGTATGTGTATGAAAGGTTTAAATACTCATGTAATTGTAAACTGAATTATACacaatgcataaaatacattttaaaactgtgttgCATAGACAAGTCATGTCAATACTGTTCAAAGCTATATAACACATTGCAGAGCAGATAAAAGATAAGTTGAGCAACAGTATGCTTATAAATTACAAGCTGGGTCAGTGTGTAttacaaaatgattaattaattaatttaaaaaaaaaaaaagttagcctACAAAAATGGTAGGCGCATGCTTGTTAGTGGGAGAAACCAGAGTTTAATTCATAAAATCATCCAAATGTATGTTGTCAGGCAACTGTTGATTATTAATTTCTGCTGTTTGTAATATTACACTGAACTGTAATGAGAGCTGCTTGTGAATTATCTGTCCTGTAATCCGCTTTATTAATGGATTATCTTTTACTTCACACGATTCTATCAGCAGAGGTGATCAACCATTCataattgtttatattcatGCAAGCTTGAAACTTGACCGGTTATTCTTTATGTATTCTTACTGTGAGTCAGAGTGACTTGTCTATGCCTACTCTTCAAATCCCTGGCAGATCTCGTCATCACACCACCATTATGAAATGTGTCTGGTACTGAGTGCACCACAGGTCAAGTTCATAAACGTTTTAAACTGAATGCTTATTTATAAACGTGCAAAGAATCTCCAATGTGCATTATCTTAAGTGTTTTGGATGAGTTATTGAGTAATGGATCAGTAAGCGGACCTCCAATCTCTTGAGCACTTTTCCTGTATATTTGAGTGCCCTTTTTTGTAGGGTtgtattttgtttctctttcaAACAGAGCCATAcccatgtcaaagcagtgacgtCAGTCACTCTGATCAGCAGAATATAGCGGCTGCTTTTAAGATACCAAGCAGTAAATCACTAGCTTCGCCTGACTCAACACGTTCATCCTCCACAGAGAAACTGTTGCTGTTGAAAGAATTCTAGCTAGTGCAGTAAAGGTAAAGAATACTGTCTTGGATGTATTTTCAGCTCTGTGAAAGGAATAATGGGTTTTGTGCTGCTTGCAACACCCCACAAACACATCCTATTGATTATAActccattattttctttttttttcgttcttGGGGAAAGGAATGCTGATTGGTCACAGtggattataaaataaaagtcatttaaaataa

Function

symbol description
aco2 Predicted to enable 4 iron, 4 sulfur cluster binding activity and aconitate hydratase activity. Predicted to be involved in tricarboxylic acid cycle. Predicted to be active in cytosol and mitochondrion. Is expressed in several structures, including adaxial cell; heart tube; musculature system; nervous system; and pronephric duct. Human ortholog(s) of this gene implicated in infantile cerebellar-retinal degeneration and optic atrophy 9. Orthologous to human ACO2 (aconitase 2).

NR:

description
PREDICTED: aconitate hydratase, mitochondrial

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0003994 aconitate hydratase activity molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG:

id description
K01681 ACO, acnA; aconitate hydratase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254244.1 True 3650 mRNA 0.45 17 8640650 8649914

Neighbor

gene id symbol gene type direction distance location
tefa LOC107584098,LOC107734194,LOC107663181 coding upstream 6580 8628627 ~ 8634070 (+)
zc3h7bb LOC107690064,LOC107692064,LOC107734154,LOC107554050 coding upstream 14323 8613339 ~ 8626327 (+)
cdc42ep1a LOC107584101,LOC107690062,LOC107734237,LOC107692066,LOC107554048,LOC107731423 coding upstream 48621 8583518 ~ 8592029 (+)
si:ch211-141o9.10 si:ch211-141o9.10,LOC107690061,LOC107584211,LOC107734185,LOC107584178,LOC108431982,LOC107089545 coding upstream 67251 8568778 ~ 8573399 (+)
maff maff,LOC107690056,LOC107584105,LOC107692071,LOC107554043,LOC107731405,LOC107734233 coding upstream 99479 8535986 ~ 8541171 (+)
csdc2a csdc2a,csdc2,LOC107584207,LOC107731402,LOC107554055,LOC105919973 coding downstream 417 8650331 ~ 8652780 (+)
gucy2cb si:ch73-139e5.4,LOC107734164,LOC107584206,LOC107663179 coding downstream 4087 8654001 ~ 8668389 (+)
rangap1b rangap1b,LOC107554056,LOC107709655,LOC107692059,LOC107734248 coding downstream 37997 8687911 ~ 8693190 (+)
chadlb chadl,chadlb coding downstream 43498 8693412 ~ 8698501 (+)
trnaq-cug_20 NA coding downstream 55346 8705260 ~ 8705331 (+)
G86593 NA non-coding upstream 295682 8344669 ~ 8344968 (+)
G86577 NA non-coding upstream 348588 8291843 ~ 8292062 (+)
LOC122355856 NA non-coding upstream 433902 8204145 ~ 8206748 (+)
G86536 NA non-coding upstream 436507 8203583 ~ 8204143 (+)
G86540 NA non-coding upstream 442240 8198094 ~ 8198410 (+)
G86713 LOC107578697 non-coding downstream 32475 8682389 ~ 8686117 (+)
G86756 NA non-coding downstream 223413 8873327 ~ 8873545 (+)
G86758 NA non-coding downstream 225201 8875115 ~ 8875455 (+)
G86943 NA non-coding downstream 831671 9481585 ~ 9487179 (+)
G86959 LOC107657285,LOC107733473,LOC107738963,LOC107665891 non-coding downstream 946379 9596293 ~ 9600682 (+)
hbbe2 hbbe2,LOC107734191,LOC105910203 other upstream 442746 8195964 ~ 8197904 (+)
msrb1b msrb1b,LOC100705913 other upstream 533870 8105148 ~ 8106780 (+)
LOC122355675 NA other upstream 796567 7815823 ~ 7844083 (+)
G86143 NA other upstream 1332421 7307924 ~ 7308229 (+)
G86142 NA other upstream 1335802 7303138 ~ 7304848 (+)
arsg arsg,LOC107734203,LOC107660857,LOC107692046,LOC107554066 other downstream 186534 8836448 ~ 8852449 (+)
pkd1b LOC107723630,LOC107665861,LOC107556563 other downstream 635749 9285663 ~ 9306831 (+)
mfsd8 mfsd8,LOC107738985,LOC107556570 other downstream 1006755 9656669 ~ 9664139 (+)
LOC122355274 shisa9a,LOC107584108,LOC107734251,LOC107669237,LOC107554036,LOC107731434,LOC107692077 other downstream 1107333 9757247 ~ 9767228 (+)
LOC122355252 fam20cl,LOC107741571,LOC107664989,LOC107570372,LOC108436593,LOC102782963,LOC108259419 other downstream 1214900 9864814 ~ 9874515 (+)

Expression


Co-expression Network