csdc2a (csdc2a,csdc2,LOC107584207,LOC107731402,LOC107554055,LOC105919973)


Basic Information

Item Value
gene id csdc2a
gene name csdc2a,csdc2,LOC107584207,LOC107731402,LOC107554055,LOC105919973
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8650331 ~ 8652780 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254249.1
TTATAATTGGagcgtttttgttttcttgcgtCGCGTCGCGTCTCTCGCGTTCAATTTTGATGGGGCGTCCCTCCCTCTCCACCCGTAACCTCATTTATTGTGCGTTACGTAGGGGTCCCTCGAACTGAATATGTGGACCACGAATGGTAGTACTCAGGCTTTTAATACCGGATTCTAATGTAGCTATGTAGAAAAATTTGTATCCGCAGCGCAAGAGATATCAACCGACAGATTGGTATCCACTATATCGTACAGTACGAGGCCTCATCTCATCTCCAGGGAACTTCACACCAATGGCTGATTCAGACGGCACGTCTACATCTGACCGCAAGCCGCGCTGCCCACATACACCTGTCTCACTTTCATTGCCTTTCCTGAGAGAGGGCAGTAATGTTTTGGAGAGGAAACCGCCCCAAACAGGGGAACCACCTAGTCCACTGCCAACCAAACGCACACGCACGTATTCAGCATCCGTAAGAGCCAAATCTGGACCCGTCTTCAAGGGCATTTGCAAGAACTTTTCAAGGTCACAAGGTCATGGATTCATTCGCCCCTCCCATGGAGGAGAAGACATATTTGTTCACATCTCAGATATTGAGGGTGAATACGTGCCAATGGAGGGGGATGAGGTGACCTACAAAGTGTGTCCTGTTCCTCCCAAGAACATAAAGTTCCAAGCCGTTGAGGTGGTCATCACCAACCTGTCTTCCGGGAGGAAGCATGAGACCTGGTCTGGGCAAGTTATCAGCTCCTAGCTCACACATTCAGAGCTCAACAGAAGAATAAAggcagagagggagagataaaGGCAGGATTTTAACTTGAGGTGCTCATGTTGGCGTAAAATGGTGTTGTGTGTAAGTAGGATAGGGATGGAATAGCAATTAGGGTTATGCAACTGTTGTTTTCTCCGGTCTGGCAAATAAGCAACAGGAAGTTGGTGAGGAGTCTGTTCGGAAAATGTTTTGAGATGCAAGTCAGCTGAGCTTTAATATAGCACTGGCAGAACATAACATAACTGTGAAACAAAAAGCAGCAGTGTTTCCCTTGTTtgaaattttgtcatttatatgtaattaattatgtatttattttcactttatgtACAGAGGCATTTGAGTTCATTGTGGTGTGTATGTTCCACTCATTTATGTAAAACCGAtttcctaaaataaattaatgcacaTCAATGGGAACTTCCATTTTCTTTACTTGTGATTGATAGGACTGATATTAGTTTTCTGGAAGAAAGCTACAAATCTCAAAATCACAGTAGCTCATTTTGTCAAGAACAATGCTTCTTATGAAAGTTCTAATAAAAGTGAAACAACACCgtg
>XM_043254250.1
TATATATTACCGTTGATTGAATACGCCTTTACTGTTATGGTGTCGCATACTGTGGACTACGTTTGTCAACAACCTTCATTGTTGAGCGCAGGTTGATAATACGATAATAAAACACACTACGTCGTAGTCAATGTCGATAAGGCTTTCTTAGGCTACAGGGAAGAAACCCTCGGCGCACTGGAAAACAATGAAAGGGAAACAATATGAAGGAGGAAAACAGTCGCCCCTAAGGCCTCATCTCATCTCCAGGGAACTTCACACCAATGGCTGATTCAGACGGCACGTCTACATCTGACCGCAAGCCGCGCTGCCCACATACACCTGTCTCACTTTCATTGCCTTTCCTGAGAGAGGGCAGTAATGTTTTGGAGAGGAAACCGCCCCAAACAGGGGAACCACCTAGTCCACTGCCAACCAAACGCACACGCACGTATTCAGCATCCGTAAGAGCCAAATCTGGACCCGTCTTCAAGGGCATTTGCAAGAACTTTTCAAGGTCACAAGGTCATGGATTCATTCGCCCCTCCCATGGAGGAGAAGACATATTTGTTCACATCTCAGATATTGAGGGTGAATACGTGCCAATGGAGGGGGATGAGGTGACCTACAAAGTGTGTCCTGTTCCTCCCAAGAACATAAAGTTCCAAGCCGTTGAGGTGGTCATCACCAACCTGTCTTCCGGGAGGAAGCATGAGACCTGGTCTGGGCAAGTTATCAGCTCCTAGCTCACACATTCAGAGCTCAACAGAAGAATAAAggcagagagggagagataaaGGCAGGATTTTAACTTGAGGTGCTCATGTTGGCGTAAAATGGTGTTGTGTGTAAGTAGGATAGGGATGGAATAGCAATTAGGGTTATGCAACTGTTGTTTTCTCCGGTCTGGCAAATAAGCAACAGGAAGTTGGTGAGGAGTCTGTTCGGAAAATGTTTTGAGATGCAAGTCAGCTGAGCTTTAATATAGCACTGGCAGAACATAACATAACTGTGAAACAAAAAGCAGCAGTGTTTCCCTTGTTtgaaattttgtcatttatatgtaattaattatgtatttattttcactttatgtACAGAGGCATTTGAGTTCATTGTGGTGTGTATGTTCCACTCATTTATGTAAAACCGAtttcctaaaataaattaatgcacaTCAATGGGAACTTCCATTTTCTTTACTTGTGATTGATAGGACTGATATTAGTTTTCTGGAAGAAAGCTACAAATCTCAAAATCACAGTAGCTCATTTTGTCAAGAACAATGCTTCTTATGAAAGTTCTAATAAAAGTGAAACAACACCgtg

Function

symbol description
csdc2a Predicted to enable mRNA 3'-UTR binding activity. Predicted to be involved in regulation of mRNA stability. Predicted to be active in cytoplasm. Is expressed in nervous system; neural tube; and trigeminal placode. Orthologous to human CSDC2 (cold shock domain containing C2).
csdc2 Predicted to enable mRNA 3'-UTR binding activity. Predicted to be involved in regulation of mRNA stability. Predicted to be located in nucleus. Predicted to be active in cytoplasm.

NR:

description
PREDICTED: cold shock domain-containing protein C2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254249.1 True 1337 mRNA 0.44 4 8650331 8652780
XM_043254250.1 False 1307 mRNA 0.43 4 8650630 8652780

Neighbor

gene id symbol gene type direction distance location
aco2 aco2,LOC107734200,LOC107584097,LOC107731401,LOC107554054,LOC107692062,LOC108273913 coding upstream 417 8640650 ~ 8649914 (+)
tefa LOC107584098,LOC107734194,LOC107663181 coding upstream 16261 8628627 ~ 8634070 (+)
zc3h7bb LOC107690064,LOC107692064,LOC107734154,LOC107554050 coding upstream 24004 8613339 ~ 8626327 (+)
cdc42ep1a LOC107584101,LOC107690062,LOC107734237,LOC107692066,LOC107554048,LOC107731423 coding upstream 58302 8583518 ~ 8592029 (+)
si:ch211-141o9.10 si:ch211-141o9.10,LOC107690061,LOC107584211,LOC107734185,LOC107584178,LOC108431982,LOC107089545 coding upstream 76932 8568778 ~ 8573399 (+)
gucy2cb si:ch73-139e5.4,LOC107734164,LOC107584206,LOC107663179 coding downstream 1221 8654001 ~ 8668389 (+)
rangap1b rangap1b,LOC107554056,LOC107709655,LOC107692059,LOC107734248 coding downstream 35131 8687911 ~ 8693190 (+)
chadlb chadl,chadlb coding downstream 40632 8693412 ~ 8698501 (+)
trnaq-cug_20 NA coding downstream 52480 8705260 ~ 8705331 (+)
ep300a LOC107692052,LOC107584175,LOC107709650,LOC107734181 coding downstream 53965 8706745 ~ 8727704 (+)
G86593 NA non-coding upstream 305363 8344669 ~ 8344968 (+)
G86577 NA non-coding upstream 358269 8291843 ~ 8292062 (+)
LOC122355856 NA non-coding upstream 443583 8204145 ~ 8206748 (+)
G86536 NA non-coding upstream 446188 8203583 ~ 8204143 (+)
G86540 NA non-coding upstream 451921 8198094 ~ 8198410 (+)
G86713 LOC107578697 non-coding downstream 29609 8682389 ~ 8686117 (+)
G86756 NA non-coding downstream 220547 8873327 ~ 8873545 (+)
G86758 NA non-coding downstream 222335 8875115 ~ 8875455 (+)
G86943 NA non-coding downstream 828805 9481585 ~ 9487179 (+)
G86959 LOC107657285,LOC107733473,LOC107738963,LOC107665891 non-coding downstream 943513 9596293 ~ 9600682 (+)
hbbe2 hbbe2,LOC107734191,LOC105910203 other upstream 452427 8195964 ~ 8197904 (+)
msrb1b msrb1b,LOC100705913 other upstream 543551 8105148 ~ 8106780 (+)
LOC122355675 NA other upstream 806248 7815823 ~ 7844083 (+)
G86143 NA other upstream 1342102 7307924 ~ 7308229 (+)
G86142 NA other upstream 1345483 7303138 ~ 7304848 (+)
arsg arsg,LOC107734203,LOC107660857,LOC107692046,LOC107554066 other downstream 183668 8836448 ~ 8852449 (+)
pkd1b LOC107723630,LOC107665861,LOC107556563 other downstream 632883 9285663 ~ 9306831 (+)
mfsd8 mfsd8,LOC107738985,LOC107556570 other downstream 1003889 9656669 ~ 9664139 (+)
LOC122355274 shisa9a,LOC107584108,LOC107734251,LOC107669237,LOC107554036,LOC107731434,LOC107692077 other downstream 1104467 9757247 ~ 9767228 (+)
LOC122355252 fam20cl,LOC107741571,LOC107664989,LOC107570372,LOC108436593,LOC102782963,LOC108259419 other downstream 1212034 9864814 ~ 9874515 (+)

Expression


Co-expression Network