G2774


Basic Information

Item Value
gene id G2774
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 4453778 ~ 4454232 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU3086
TGAAACCCCCTGGCTCTTAATGCATCGTATTTCCTTCTGGAGCATCAGTGAATGTTTGAACCTTTTTTAATAGTTGTGTTTGAGTCCGTTAATTGTCCTCAGTGTGAAAAGATGAATCTCAAAATCATACAGTCACTGCCAGAAAGGGTTCAAATATGCAAAAATGATCTGTCTCAGCTGCTCACTGTACCTAAACACACAAATGATTTCGAGAAAATTACTAGCAGTATGTGCACCACTTTCACTAGTACATTAGATACTGTTGCACCGATGAGATTAAAAAAGGTTAGAGAGAAAAATACTGTACCATGGTACAACAGTATTACTCACGCTATCAAAAGAGAAACTCGTAATCTAGAACGCAAATGGAGACAAACTCGTTTAGAGGTCTTCAGAATCGCATGGAAAGATAGCTCGTCCCGTTATAGAAAGACTCTAAAAGCAGCCAGGGCCGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU3086 True 455 TUCP 0.40 1 4453778 4454232

Neighbor

gene id symbol gene type direction distance location
CI01000000_04451252_04452143 NA coding upstream 767 4451130 ~ 4453011 (+)
CI01000000_04368179_04392483 NA coding upstream 60788 4367839 ~ 4392990 (+)
CI01000000_04355381_04356090 NA coding upstream 97635 4355381 ~ 4356143 (+)
CI01000000_04225109_04225608 NA coding upstream 227162 4225109 ~ 4226616 (+)
CI01000000_04165348_04197615 NA coding upstream 255957 4165285 ~ 4197821 (+)
CI01000000_04462428_04462831 NA coding downstream 8196 4462428 ~ 4463112 (+)
CI01000000_04547587_04562715 RXFP1 coding downstream 93355 4547587 ~ 4562837 (+)
CI01000000_04576065_04586515 ETFDH coding downstream 121833 4576065 ~ 4586881 (+)
CI01000000_04661351_04667059 NA coding downstream 207119 4661351 ~ 4667087 (+)
CI01000000_04698746_04717749 RAPGEF2 coding downstream 243809 4698041 ~ 4718908 (+)
G2755 NA non-coding upstream 28040 4425395 ~ 4425738 (+)
G2752 NA non-coding upstream 29824 4423716 ~ 4423954 (+)
G2427 NA non-coding upstream 252377 4201178 ~ 4201401 (+)
G2420 NA non-coding upstream 261424 4192124 ~ 4192354 (+)
CI01000000_04138020_04144928 NA non-coding upstream 305955 4138020 ~ 4147823 (+)
G2776 NA non-coding downstream 1760 4455992 ~ 4456314 (+)
G2780 NA non-coding downstream 9307 4463539 ~ 4463768 (+)
G2792 NA non-coding downstream 22325 4476557 ~ 4476765 (+)
G2793 NA non-coding downstream 24753 4478985 ~ 4479194 (+)
G2795 NA non-coding downstream 30351 4484583 ~ 4484815 (+)
G579 NA other upstream 2544970 1767917 ~ 1908808 (+)
G435 NA other upstream 3020924 1425121 ~ 1432854 (+)
G350 NA other upstream 3776841 671842 ~ 676937 (+)
G252 NA other upstream 3946706 503209 ~ 507072 (+)
G2850 NA other downstream 271754 4725986 ~ 4726482 (+)
G6811 NA other downstream 5750599 10204831 ~ 10321679 (+)
G6820 NA other downstream 5972991 10427223 ~ 10433018 (+)
G7018 NA other downstream 6524257 10978489 ~ 10980872 (+)
G7153 NA other downstream 6790225 11244457 ~ 11245633 (+)

Expression


Co-expression Network