ldb3b (ldb3b,ldb3,LOC107749342,LOC107552745,LOC107739309,LOC108274368,LOC107698793)


Basic Information

Item Value
gene id ldb3b
gene name ldb3b,ldb3,LOC107749342,LOC107552745,LOC107739309,LOC108274368,LOC107698793
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11375795 ~ 11392390 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254262.1
TCTATTCTTAGGCTGTCTGTCCAGGCCATCCGAGCAGGCAAGAACTCTCCTCCTTctgcttttaaaacttttttgacttattttgtCAGTGTAAACAGGGGTGGGATTGAactgtttgtttgggttttttttttatctgatcaTTCTGTGAGGCTCCTCGGTGCCTGCCTGTACCCGGGTGTTTGGTCATCCCGACAACAGGGAGAagaaaattaaaggaaaaaGAGGACTTTACTGATCCAAGAAGAAGCTTTTCACTTAAACTTAAACTCTCTTCAAAATGAGCAATTACACAGTAACCCTGTCTGGACCTGCACCATGGGGCTTCAGGCTGCAAGGAGGCAAAGACTTCAACATGCCCCTGACCATCTCCCGGATCACACCAGGCAGCAAGGCAGCAAGTGGAAACCTCAATCAGGGTGACATAATTACAGCAATCGATGGGGTCAGCACTGAGGGCATGACCCATCTGGATGCCCAAAACAAGATAAAGGCAGCCATCACCAAACTCAATCTCACCATGCAGAGGTCGAGACGTCCCGCTCCTGTACCCACAGCCACTCCAAGAATGGACTCACCCATGCCAATTATCCCTCACCAGAAGGAAACCACAGACACTGAGGAAGGAGAAGATGAAGAAAAACCTGTCAAAAAATATGGTATCCTCCTGGCAAAAAAACCTTCCAAAAAATCTCTAATTCCAAACACTGAGGAGAAACCTCAGGAGAATCTCCAACCTGTAATTCATTCTCCTGCTAAAAGCCCTGTCCCTACGTATTTGCCATTTGGGCAAGGGCCAAAAACGACCCCGGACCAGAGGGGACAGTATAATTCTCCCATAGGCCTGTATTCAGCAGAAACTTTAAAGGAAATGGTCATGCAACAAGACAGTTTAAATGGTCTTCCACTGCTGGGCTCACTTCCCATTAAAGACCCTCTTGTGGACAGTGCTTCTCCAGTCTACCAGGCTGTGATCAAACCTGACAATAAGGAGATGGAGATGTCAGAGTGGGCCCGTCGTGCCGCCAACCTGCAGTCAAAGTCCTTCCGCATCCTTGCTCATATCACAGGAACGGAGTATTTGCAAGATCCAGATGAGGAGGCTCTTAGAAAATCAAGGGAGAAGTTTGAATCAGAGGTAAAAGGCCCACGATTTGCCAAACTGAAAAACTGGCACCACGGCCTGTCTGCACAGATCCTTAACATCCAGGGGTAAATGCAAACCAGTGTTACTGGAGAGAAGTTGAGGCAACGGTCAACATGGAAACCCGTAGGCGATGTAAAGTGAGGGTGCAAAAGGCAGATAGGAGTAGTGTAGTGACTGGAATGTGAGTTAGAGTTCTAAACTAGACTGTAAGCGAACACACGAAGCTCCTGTGTTTGATGTTCATGTGtctttttgtttcatgtaaCTTTCAGCCACTGAAACATAGTGCATAGTGCTCAGTTTgtcgttttctttttcattttatgtttctctttttcttctcttttggCTGCTCTTGTTTATCctaaattatttctgaataatGAATTGCCTGAATGATTTACTGATGTAAAGAACTATCCCTGagagaaatgataaaatatatgtacCACATCCACTGCAGTACACCACAGCACATATTGAAATACAAACCAAATGTACTATTGttaatgtgaataaaacattattacttttaaccaaataaa
>XM_043254263.1
TTAGGCTGTCTGTCCAGGCCATCCGAGCAGGCAAGAACTCTCCTCCTTctgcttttaaaacttttttgacttattttgtCAGTGTAAACAGGGGTGGGATTGAactgtttgtttgggttttttttttatctgatcaTTCTGTGAGGCTCCTCGGTGCCTGCCTGTACCCGGGTGTTTGGTCATCCCGACAACAGGGAGAagaaaattaaaggaaaaaGAGGACTTTACTGATCCAAGAAGAAGCTTTTCACTTAAACTTAAACTCTCTTCAAAATGAGCAATTACACAGTAACCCTGTCTGGACCTGCACCATGGGGCTTCAGGCTGCAAGGAGGCAAAGACTTCAACATGCCCCTGACCATCTCCCGGATCACACCAGGCAGCAAGGCAGCAAGTGGAAACCTCAATCAGGGTGACATAATTACAGCAATCGATGGGGTCAGCACTGAGGGCATGACCCATCTGGATGCCCAAAACAAGATAAAGGCAGCCATCACCAAACTCAATCTCACCATGCAGAGGTCGAGACGTCCCGCTCCTGTACCCACAGCCACTCCAAGAATGGACTCACCCATGCCAATTATCCCTCACCAGAAGGTCATTGCCAACACAGCTGCCACCCAAGAGTATGTTCCCAGCTTCAACCCCATCGCACTGAAGGACTCAGCTTTGTCTACTCACAAGCCTATTGAGGTCAAGGGTCCCGGTGGGAAGGCTACTATCATCCATGCCCAGTACAACACTCCTATTAGTATGTATTCTCAGGATGCCATTATGGATGCCATTGCTGGCCAGGCCCAAGCCCGAGGAAACGAGATGAGTGGTGATGACTCCGCTGGATCTCCCTTGGCCTCACTTCCCATTAAAGACCCTCTTGTGGACAGTGCTTCTCCAGTCTACCAGGCTGTGATCAAACCTGACAATAAGGAGATGGAGATGTCAGAGTGGGCCCGTCGTGCCGCCAACCTGCAGTCAAAGTCCTTCCGCATCCTTGCTCATATCACAGGAACGGAGTATTTGCAAGATCCAGATGAGGAGGCTCTTAGAAAATCAAGGGAGAAGTTTGAATCAGAGGTAAAAGGCCCACGATTTGCCAAACTGAAAAACTGGCACCACGGCCTGTCTGCACAGATCCTTAACATCCAGGGGTAAATGCAAACCAGTGTTACTGGAGAGAAGTTGAGGCAACGGTCAACATGGAAACCCGTAGGCGATGTAAAGTGAGGGTGCAAAAGGCAGATAGGAGTAGTGTAGTGACTGGAATGTGAGTTAGAGTTCTAAACTAGACTGTAAGCGAACACACGAAGCTCCTGTGTTTGATGTTCATGTGtctttttgtttcatgtaaCTTTCAGCCACTGAAACATAGTGCATAGTGCTCAGTTTgtcgttttctttttcattttatgtttctctttttcttctcttttggCTGCTCTTGTTTATCctaaattatttctgaataatGAATTGCCTGAATGATTTACTGATGTAAAGAACTATCCCTGagagaaatgataaaatatatgtacCACATCCACTGCAGTACACCACAGCACATATTGAAATACAAACCAAATGTACTATTGttaatgtgaataaaacattattacttttaaccaaataaa

Function

symbol description
ldb3b Predicted to enable actin binding activity and muscle alpha-actinin binding activity. Predicted to be involved in actin cytoskeleton organization; heart development; and muscle structure development. Predicted to be part of filamentous actin. Predicted to be active in Z disc; adherens junction; and stress fiber. Is expressed in cardiovascular system; musculature system; and somite. Human ortholog(s) of this gene implicated in dilated cardiomyopathy; dilated cardiomyopathy 1C; distal myopathy; and myofibrillar myopathy 4. Orthologous to human LDB3 (LIM domain binding 3).
ldb3 Enables cytoskeletal protein binding activity. Predicted to be involved in actin cytoskeleton organization; heart development; and muscle structure development. Predicted to act upstream of or within sarcomere organization. Located in Z disc and cytoskeleton. Implicated in dilated cardiomyopathy; dilated cardiomyopathy 1C; distal myopathy; and myofibrillar myopathy 4. Biomarker of myotonic dystrophy type 1.

NR:

description
LIM domain binding 3 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254262.1 True 1692 mRNA 0.44 8 11375795 11392390
XM_043254263.1 False 1628 mRNA 0.46 10 11375795 11392383

Neighbor

gene id symbol gene type direction distance location
bmpr1ab bmpr1a,bmpr1ab,LOC107749344,LOC107698810,LOC107550060,LOC107739296,LOC107582766,LOC108274296 coding downstream 989 11344459 ~ 11374806 (-)
sncgb LOC108430421,LOC107550059,LOC107700127 coding downstream 44002 11324401 ~ 11331793 (-)
six2b LOC107749381,LOC107550038,LOC107698797,LOC107582772,LOC107700111,LOC107739330 coding downstream 156243 11217292 ~ 11219552 (-)
zfp36l2 zfp36l2,LOC107698819,LOC107749349,LOC107700120,LOC107550050,LOC107728722,LOC107582775 coding downstream 252957 11119418 ~ 11122838 (-)
hcar1-4 LOC107749353,LOC107698821,LOC107550036,LOC107700109,LOC107582776,LOC107728709 coding downstream 291759 11082205 ~ 11084036 (-)
opn4b opn4b,LOC107552747,LOC107739286,LOC107582762 coding upstream 1867 11394257 ~ 11420206 (-)
usp54b LOC107698809,LOC107706875,LOC107720824,LOC107582762 coding upstream 48379 11440769 ~ 11528254 (-)
myoz1b myoz1b,LOC107700112,LOC107706866,LOC107727320,LOC107582765,LOC107552748 coding upstream 136661 11529051 ~ 11534953 (-)
synpo2lb synpo2lb,LOC107706876,LOC107727319,LOC107700134,LOC107582764,LOC107552728,LOC107698791 coding upstream 144280 11536670 ~ 11550425 (-)
acsf2 acsf2,LOC107698803,LOC107706880,LOC107552752,LOC107727305,LOC107582759,LOC107675647 coding upstream 190772 11583162 ~ 11601481 (-)
G87414 glud1b,LOC107700126,LOC107739271,LOC107582816 non-coding downstream 56874 11316383 ~ 11318921 (-)
G87417 NA non-coding downstream 59797 11312472 ~ 11315998 (-)
G87409 NA non-coding downstream 77261 11259017 ~ 11298534 (-)
LOC122355534 NA non-coding upstream 186798 11579188 ~ 11580359 (-)
G87547 NA non-coding upstream 360659 11753049 ~ 11790926 (-)
G87551 NA non-coding upstream 406615 11799005 ~ 11799343 (-)
G87552 NA non-coding upstream 407202 11799592 ~ 11800481 (-)
G87593 NA non-coding upstream 498544 11890934 ~ 11894512 (-)
G87489 NA other downstream 53192 11321423 ~ 11322603 (-)
LOC122355648 cox7a3,LOC107550034,LOC107582778,LOC107749383,LOC107728726,LOC108429329,LOC108273985,LOC107700119 other downstream 329906 11042888 ~ 11045889 (-)
cript cript,LOC107582781,LOC107728714 other downstream 368841 11005006 ~ 11006954 (-)
thrab thrab,LOC107584392,LOC107733455,LOC107657272,LOC108430158,LOC107665883,LOC107723634 other downstream 1435946 9311653 ~ 9939849 (-)
G87569 NA other upstream 440489 11832879 ~ 11835612 (-)
G87608 NA other upstream 556150 11948540 ~ 11951155 (-)
prr15lb prr15lb,LOC107754107,LOC107675003,LOC107565730,LOC107743781,LOC107677864,LOC107563795 other upstream 1256993 12649383 ~ 12675472 (-)
G87845 LOC107675011 other upstream 1359514 12751904 ~ 12752678 (-)
LOC122355808 LOC107684141,LOC107702421,LOC107581556,LOC107684142,LOC107708119,LOC107708127 other upstream 2031918 13424308 ~ 13432195 (-)

Expression


Co-expression Network