rangap1b (rangap1b,LOC107554056,LOC107709655,LOC107692059,LOC107734248)


Basic Information

Item Value
gene id rangap1b
gene name rangap1b,LOC107554056,LOC107709655,LOC107692059,LOC107734248
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8687911 ~ 8693190 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254273.1
CGGCACTTTCAAAGAACTGCCGCCTCCATGTGCCTCCTGTTGTGATGGTTTTTCTCTAGTCAGGCTAGTTATCGGCTGGCTTCTTTTAATATCTGCGCCGGTAACATTAAAGCAAAGGGAAAGCAATGGCCTCTGGAGATATTGCTCAGATTACAGAGGCGCTGGCCAAGACTCATGTCGGAGAAGTGGAATTAAATTATAAGGGACGAGGGCTGAAGTTGGACAATGCAGAGTCAGTGAAAGAGATGGTGCAGGAGATCGAACAGTGTCAGGGTCTGCAGTCTCTCAGATTAGAGGGAAACACGTTGGGGGTTGAAGCAGCACAGGCAATTTCAAAATCTCTTGAAGCGAAAAGGGAATTGGAGCAATGCCACTGGAGTGACTTGTTCACAGGTCGCCTTCGTTCTGAAATTCCACCTGCTCTGAAATCATTGGGCAGTGCTTTGATGACATCAGGGGCCAGACTGACTCATCTGGACTTAAGCGACAATGCCTTCGGTCCTGATGGTGTAAAGGGAATTGAAAGCCTGCTAAAGAGCTCTGCCTGCTATACCTTATGTGAGCTCAGGCTTAATAATTGTGGCATGGGCATTGGAGGGGGTATGgtccTTGCTTCTGCTTTGACTGAATGTCACAAGCAGTCCAGTGCAGCTGGCTCCCCCCTGAGGTTAAAAGTCTTCATAGCTGGACGCAATCGGCTGGAGAATGATGGTGCAACTGCACTTGCCAAAGCATTTAAGTTGTTGGGCAGTCTTGAGGAGGTCCATATGCCACAGAATGGAATCAACCATTCTGGTATCACTGCTTTAGCCACAGCCGTAAAGCACAACCCGAACCTTCAGGTCCTCAACCTCAACGACAACACTTTTACTAAGAGAGGATCGATAGCCATGGCGGAGGCTATTAGGCACCTCCAGTGTCTTAAAGTCATCAATTTTGGAGACTGTTTGGTTCGCTCGGAAGGTGCAATTGCTATAGCAGGGGCCCTTCGAGAGGGACTGCCATTTCTCAGGGAGCTGAATTTATCATTTGGAGAAATTTGTGAGGCTGCAGCTGTGGTAGTTGCAAAGGCTGTTCGGGACAAAGCTAATCTGGAGAAACTGGACCTTAATGGAAATAGCTTTGGAGAGGAAGGCTGTGAGGCTCTCAGGGAAGTGATGGAGAGCATGAACATGGAAGATCTGCTGGGCTCACTGAGTGATGATGAAGGACagcctgatgatgatgatgatgatgatgaggaagatgaggaagaggaagagaaggaagATGAAGAGGATGCAGAGGAAAATGGTGTCAATGGAACAAAAGATGTCATTGAAGAAAAGGAGGAGCCTCACTGCTTTTCTGAACTTACGTCCTTCCTCATCTCCCCATCAGCTGAGAAACTAATCTCTCTTGGATCCAAAAGGATCCCGCTCATTGAGCAGCAGGTCGACGTTTTAGATGCTAGCAAGGTGTCTGAAGTTTTTCTCAAGATTTCATCAGTATACGAAGACGAACCAGAAGTAAAGCAAGCTATTTTTGAGAGCACTGATGCCCTGTTGAGGAAAGCCTTTTCCAACTCCCACTCTCAATCTTATAGTTTTATCTCCTCACTAATAGTGAACCTGGGTCTTTTAAAGAGTGAagataaaaagataaagaagGTATCTGTAATGCCTGGACACTTGCTTGCTTTGGAGCATGCAGCTGCACAAGAGTTTTTCCCAGCAGATCAGGCTGGAGTTCTGGAAGAATTTGTGTCACGAAATGGCAAAGTCTTAGAATCCTGCTGCAATGCCAGAGATGCTCTCAGGACCACATTGGTGAAAAGGACCACTGCTTAATTCTTATTAATCTTAACCCTGATTATAGAGCCACTGAAATTAATACgggtcaaaaaaaaacacacacgctctgTAAACTATTGATTTAGTTTATCTATGTTCAGTGATTTCTGGATCCATTTTGGCATGCAGATCTCAGACTGCAATGGTTGGCAAAGTATAGTGATGACTAGTGCCTCATGACAATTAACCCCAAATGAATTTCCTTACAGCTCAACTGTAGACAGTTAGCTTTGAATGAGAGTGTTGTgttctttcatctctttttagaaatattgcttctatttttttatacatggaAAGGGAAAAAGGGGGGGCGCGGGGCACTGGATGATAATTAGACTTAATTATCGCTTAAACCTTAAATGATTGTAATGTTATAACTGATATTTCTGAACAATTGTCATTACTTAAACTGTCACATTGACATGGAGCTGCGAGCATGTTCACTCTCTCATGCCTTTTATTAGATACGTGCCATATTGTGAGCTATTGGTGGTGCAGTTAAAACCAAAATCAAGTAGTATAAAAATCTTTGGATTGAAATGAAGAAGGGAGTGAAagtgaaggggaaaaaatgtttgGACATAGTATATTTAATACTAACCTACAACTGGTATGCACtgaatattgttatatttgcaACATtccgttttgtttttattaaagttttcttttcttggGAGAAAA

Function

symbol description
rangap1b Predicted to enable GTPase activator activity. Predicted to act upstream of or within signal transduction. Orthologous to human RANGAP1 (Ran GTPase activating protein 1).

NR:

description
PREDICTED: ran GTPase-activating protein 1-like isoform X1

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG:

id description
K14319 RANGAP1; Ran GTPase-activating protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254273.1 True 2519 mRNA 0.43 16 8687911 8693190

Neighbor

gene id symbol gene type direction distance location
gucy2cb si:ch73-139e5.4,LOC107734164,LOC107584206,LOC107663179 coding upstream 19522 8654001 ~ 8668389 (+)
csdc2a csdc2a,csdc2,LOC107584207,LOC107731402,LOC107554055,LOC105919973 coding upstream 35131 8650331 ~ 8652780 (+)
aco2 aco2,LOC107734200,LOC107584097,LOC107731401,LOC107554054,LOC107692062,LOC108273913 coding upstream 37997 8640650 ~ 8649914 (+)
tefa LOC107584098,LOC107734194,LOC107663181 coding upstream 53841 8628627 ~ 8634070 (+)
zc3h7bb LOC107690064,LOC107692064,LOC107734154,LOC107554050 coding upstream 61584 8613339 ~ 8626327 (+)
chadlb chadl,chadlb coding downstream 222 8693412 ~ 8698501 (+)
trnaq-cug_20 NA coding downstream 12070 8705260 ~ 8705331 (+)
ep300a LOC107692052,LOC107584175,LOC107709650,LOC107734181 coding downstream 13555 8706745 ~ 8727704 (+)
desi1b desi1b,LOC107734250,LOC107692098,LOC107660862,LOC107584090,LOC107554028 coding downstream 51071 8744261 ~ 8747079 (+)
shisa8b shisa8b,LOC107734242,LOC107584089,LOC107660861,LOC107692051,LOC107709648,LOC107554029 coding downstream 62050 8755240 ~ 8780804 (+)
G86713 LOC107578697 non-coding upstream 1794 8682389 ~ 8686117 (+)
G86593 NA non-coding upstream 342943 8344669 ~ 8344968 (+)
G86577 NA non-coding upstream 395849 8291843 ~ 8292062 (+)
LOC122355856 NA non-coding upstream 481163 8204145 ~ 8206748 (+)
G86536 NA non-coding upstream 483768 8203583 ~ 8204143 (+)
G86756 NA non-coding downstream 180137 8873327 ~ 8873545 (+)
G86758 NA non-coding downstream 181925 8875115 ~ 8875455 (+)
G86943 NA non-coding downstream 788395 9481585 ~ 9487179 (+)
G86959 LOC107657285,LOC107733473,LOC107738963,LOC107665891 non-coding downstream 903103 9596293 ~ 9600682 (+)
LOC122355291 NA non-coding downstream 917103 9610293 ~ 9616636 (+)
hbbe2 hbbe2,LOC107734191,LOC105910203 other upstream 490007 8195964 ~ 8197904 (+)
msrb1b msrb1b,LOC100705913 other upstream 581131 8105148 ~ 8106780 (+)
LOC122355675 NA other upstream 843828 7815823 ~ 7844083 (+)
G86143 NA other upstream 1379682 7307924 ~ 7308229 (+)
G86142 NA other upstream 1383063 7303138 ~ 7304848 (+)
arsg arsg,LOC107734203,LOC107660857,LOC107692046,LOC107554066 other downstream 143258 8836448 ~ 8852449 (+)
pkd1b LOC107723630,LOC107665861,LOC107556563 other downstream 592473 9285663 ~ 9306831 (+)
mfsd8 mfsd8,LOC107738985,LOC107556570 other downstream 963479 9656669 ~ 9664139 (+)
LOC122355274 shisa9a,LOC107584108,LOC107734251,LOC107669237,LOC107554036,LOC107731434,LOC107692077 other downstream 1064057 9757247 ~ 9767228 (+)
LOC122355252 fam20cl,LOC107741571,LOC107664989,LOC107570372,LOC108436593,LOC102782963,LOC108259419 other downstream 1171624 9864814 ~ 9874515 (+)

Expression


Co-expression Network