pms2 (pms2,LOC107753423,LOC107594169,LOC107724702)


Basic Information

Item Value
gene id pms2
gene name pms2,LOC107753423,LOC107594169,LOC107724702
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7796260 ~ 7802299 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254281.1
TAAACCTTGTCTACACAGTTGATCACATGCTACGCAAAACACGTGGTGACCTGACGTTGTGCGTCACACCGCGGGAAACGTTCATACAGCGGCAGAGACCTATTCAATGTACGCGTTTATGGCATGTGAACTAATTAAAGTGTGTAGTTTATCAAAACTTATACCTTGTTGAAGCATTGGTTTTTCACACCGAGCGATGGAAACACAATAAATTCCCGCTCCTTGTTTGGCCTGAATACCGCAGGGAGCAAATGCTATCAAAAGACCCACAATGCAACACTTAAAGTAATCTTTAGTGAGTgacactatatatttattttgctgcagGAAAATATGTCAGACTCGAGCACAGGTTCTGCTGGAGCTATAAAGGCAATAGACAAACAGTCCGTGCATCAGATTTGCTCTGGGCAGGTGGTGCTGAGTCTGGCCACAGCTGTGAAAGAGCTGGTGGAGAACAGCATTGATGCTGGTGCCACTAATGTCGATGTCAAGCTAAAAGACAATGGAATAGAGTTGGTGGAAGTTTCTGACAATGGAAAAGGCGTTGAGGAGGAAAACTTTGAAGGACTAACTTTAAAACATCACACCTCTAAGCTGAGAGATTTTTCTGACTTGATACATGTGGAGACATTTGGGTTTCGCGGTGAAGCTCTGAGCTCCCTTTGTGCtcttagTGATCTTAATGTTGTGACCTGCCATGAGAGCGCCCAGATCGGAGCTCGGCTGGTGTATGACCATGATGGTCGCCTCTCTCAACGTGTGCCACATCCCCGTCAGCATGGCACTACTGTCACTCTGCAAAAGCTCTTCTCCACGTTGCCTGTTCGACACAAGGAGTTCCAGCGGAACATCAAAAAGGAATATTCCAAGATGATTTTCGTCTTGCAGTCCTACTGCATCATCTCCACTGGTGTGCGTATTACGTGCACCAACCAGATGGGACAAGGCAAGCGCACTACAGTATTATGCACCAGTGGCAGTAACAGCATGAGAGACAACATTGGAGCTGTGTTTGGACCTAAACAGCTACAAAGTTTAATTCCCTTCCAACAAATATCTCCCAATGAATCAACCAAGGAAGACTATGGCCTCAGTGGGGTAGATGTTCCTAAAGACCTTTTCAGCATTGATGGGTTTGTGTCACAAGCGGATCATGGTGTTGGTCGAAGTGCCACTGACAGACAGTTTTTCTTTATCAATAAAAGACCTTGTGATCCAGTAAAGGTCTCCAAGCTTGTGAATGAGGTTTATCACATGTATAATCGGCATCAATATCCTTTTGTTGCTCTAAACATTACTGTTGCTTCAGACTGTGTCGATGTGAATGTAACTCCAGACAAACGTCAGATTCTTctacaagaggaaaaactcttgCTGGCAATTCTTAAAAGCTCACTCATTGCTATGTTTGAGACTGGTGTCAATAAAATCAGTCTCAGTCACATTACTCCAACAATTACCAACTTGGGCAGACCAATCGAAAGAAGTGCTGGTTCAGAAGATCAGGATACACATTCTGTCTCTGAAGCACTTACAGATAATGTACCCCCAAAGACGTCCTTCAATCTTGCTGGACTTAAAGAAGCATTTTCTAAACATCAGCTTCCTGGAACTGGCTCAAAACATCATAAAGCTGCTTGTGCTGGTCCCTCTCAGaagaaaatgttttcctttGTGAGCTCttctaaaaaaatgacagacatTATAAAGTCCTCTACTAGTTTCTCTGCTGTTTCTTCCATTAAAAAATCAACTGTTTGTCTAGCTAAATATAAAAGCACCTTTGATGGTGATGCTGAAGATTCTGGGGCAGCAAACCAAAACTCAGCTGAAGATGATGCAGAGATTCTACATGAAAATAGTTCTGAGTCAGTTTTATACCCTACTACACATGAAACGGATGTTAAAGCTGAAACTATTGATGAACCTGTATGTGAGAAGTTCTGGAGTTCTACAACTTTGTTGCCGGAGAGAAAGTCAGAACTTTCTGAGGACAGATTTTCCAGTCCTGAAGCTAAAAGAGCTCGACATGAAGCTGAACCTCTAGCTGAAAGCTGTTTGGTGGATTCCAAAAACAAGAACGCTTCTCTGCAAATGGATTCACCCACGAGCATTAAGAAGAAAACAGCCCTTTTGCAGTTTTCTCTACAAGAACTTTCTAAAAAGATGCAGAGGCTAAAGGCTCAGAAGACAGAGAACAATGATCAAGAGCCAAAATATAGACTGTTCAGGGCGAAGATTAACCCTGGTGAAAACCAGAGTGCTGAGGATGAGCTTAAGAAAGAAATAagCAAAGATATGTTCAAGGATATGGAAATTATCGGTCAGTTCAACCTGGGTTTTATTATCACCAAGCTAAAATCCGATCTTTTCATAATTGACCAGCATGCCACAGACGAAAAGTACAATTTTGAGATGCTACAACAGAATAcggtcttaaagggacagcgaCTCATTGTTCCACAACATCTCCACCTTCCAGCAATCAGTGAAACCGTGCTTATGGAAAACCTTGAAATCTTCAGAAAGAACGGTTTTGACTTCCTCATTGATGAGGATGGTCAGGTTATGCAGAGGGTAAAGCTGGTGTCTTTACCTACAAGCAAGAATTGGACCTTTGGCCCAGGTGACATTGAAGAGCTCATCTTCATGCTTAGCGACAGTCCTGGAGTCATGTGTCGACCTTCTCGAGTTAGGCAGATGTTTGCATCTAGAGCATGTCGCAAATCGGTGATGGTTGGCACTGCCCTGAACACCAGTGAAATGAAAAAACTTGTGCTTCACATGGGGGAAATTGAACAGCCCTGGAATTGTCCACACGGTAGACCAACCATGAGACACCTTGCTAATCTGAATATGGTTTCTCAGGACTGAAGCAGCTACttgtttttgctgattttcCCAATGTTATATTAAcactattgttttaataaagtattttaataattgtatttttcaaataaagtacatttttcatta

Function

symbol description
pms2 Predicted to enable ATP hydrolysis activity. Predicted to be involved in mismatch repair. Predicted to act upstream of or within cellular response to DNA damage stimulus. Predicted to be located in nucleus. Predicted to be part of MutLalpha complex. Human ortholog(s) of this gene implicated in Lynch syndrome; hereditary nonpolyposis colorectal cancer type 4; mismatch repair cancer syndrome; ovarian cancer; and urinary bladder cancer. Orthologous to human PMS2 (PMS1 homolog 2, mismatch repair system component).

NR:

description
mismatch repair endonuclease PMS2 isoform X1

GO: NA

KEGG:

id description
K10858 PMS2; DNA mismatch repair protein PMS2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254281.1 True 2982 mRNA 0.42 15 7796260 7802299

Neighbor

gene id symbol gene type direction distance location
cyth3a cyth3a,cyth3,LOC107753449,LOC107669236,LOC107584132,LOC108437157,LOC108258062,LOC107556600 coding upstream 18705 7762989 ~ 7777555 (+)
atad1b atad1,atad1b,LOC107680273,LOC107669218 coding upstream 48474 7742835 ~ 7747786 (+)
rnls rnls,LOC107669231,LOC107584138,LOC107680274,LOC107594162 coding upstream 99531 7663106 ~ 7696729 (+)
ankrd22 ankrd22,LOC107753431,LOC107758445,LOC107584139,LOC107594161 coding upstream 144516 7648181 ~ 7651744 (+)
acta2 acta2,LOC107683715,LOC106531354 coding upstream 160112 7630560 ~ 7636148 (+)
rsph10b LOC107669165,LOC107584188,LOC107753448 coding downstream 535 7802834 ~ 7807610 (+)
bhlha15 bhlha15,LOC107669184,LOC107753453,LOC107584229,LOC107594213,LOC107699868 coding downstream 49209 7851508 ~ 7854838 (+)
tmem130 tmem130,LOC107669166 coding downstream 84388 7886687 ~ 7890487 (+)
LOC122355373 trrap,LOC107669193,LOC107699870,LOC107734152 coding downstream 99815 7902114 ~ 7971554 (+)
fam20cb fam20c,fam20cb,LOC107669229,LOC107734234,LOC107699871,LOC105888715,LOC107731385 coding downstream 207081 8009380 ~ 8046039 (+)
G86268 NA non-coding upstream 72399 7720392 ~ 7723861 (+)
G86283 NA non-coding upstream 76977 7718984 ~ 7719283 (+)
G86275 NA non-coding upstream 94461 7701343 ~ 7701799 (+)
G86219 NA non-coding upstream 291761 7502578 ~ 7504499 (+)
G86202 NA non-coding upstream 407279 7387668 ~ 7388981 (+)
G86374 NA non-coding downstream 44259 7846558 ~ 7846862 (+)
G86460 NA non-coding downstream 254632 8056931 ~ 8060176 (+)
G86540 NA non-coding downstream 395795 8198094 ~ 8198410 (+)
G86536 NA non-coding downstream 401284 8203583 ~ 8204143 (+)
LOC122355856 NA non-coding downstream 401846 8204145 ~ 8206748 (+)
G86143 NA other upstream 488031 7307924 ~ 7308229 (+)
G86142 NA other upstream 491412 7303138 ~ 7304848 (+)
G86029 NA other upstream 1273689 6521829 ~ 6522571 (+)
G86019 LOC107570179 other upstream 1354734 6440821 ~ 6441526 (+)
G85986 adprh,LOC108411014,LOC107726130,LOC105894051,LOC108274007 other upstream 1579693 6214919 ~ 6216567 (+)
LOC122355675 NA other downstream 13524 7815823 ~ 7844083 (+)
msrb1b msrb1b,LOC100705913 other downstream 302849 8105148 ~ 8106780 (+)
hbbe2 hbbe2,LOC107734191,LOC105910203 other downstream 393665 8195964 ~ 8197904 (+)
arsg arsg,LOC107734203,LOC107660857,LOC107692046,LOC107554066 other downstream 1034149 8836448 ~ 8852449 (+)
pkd1b LOC107723630,LOC107665861,LOC107556563 other downstream 1483364 9285663 ~ 9306831 (+)

Expression


Co-expression Network