cyth3a (cyth3a,cyth3,LOC107753449,LOC107669236,LOC107584132,LOC108437157,LOC108258062,LOC107556600)


Basic Information

Item Value
gene id cyth3a
gene name cyth3a,cyth3,LOC107753449,LOC107669236,LOC107584132,LOC108437157,LOC108258062,LOC107556600
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7762989 ~ 7777555 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254284.1
CTTCTCGCCAGTGGTTCTGTGGATGAAGGCGAATGGGAGCTGGCAGAGAGCGGTCGGCACATTCATTTGACCAGGATTTATGTTCATCTAGGCAGCAATATACGGGTCACGCGAATGACATTTAAAGCAAACCCTGGACTGGGTTACGATGAGCTCAGCGTGTATCctaatatgatttaattttttttgtttcgcaGTGTTGTATTATTAGTGTAGTAATCTAAGACTAGGACGTTATTTGCATCAAGTCCCATCGCAGAATAAACATGGACGAAGATAACCGAGTGCCTGAAGATCTCTCGCATGAAGAGAGAGATGAACTTTCCAACATTAGACGGAGAAAAAAAGAGCTGCTAGATGACATTGAGCGATTAAAGTATGAAATCTCAGAAGTCATGGCAGAGATTGAACATTTAACGTGTGTCAGAGAGACCAAAAGCACTCAGAGGAACAAGCAGATTGCTGTCGGAAGAAAGAAATTTAATATGGATCCTAAAAAGGGAATCCAATTTCTTTTGGAGAATGATCTTCTGCAGCACACACCTGAGGACATCGCACAGTTCCTCTATAAAGGCGAAGGCTTAAACAAAACTGTCATAGGAGATTATTTAGGGGAACGAGATGACTTCAACATTAAAGTTTTGCAGGCGTTTGTGGAGCTTCATGAGTTTGCTGATCTCAACCTGGTGCAAGCATTGAGGCAGTTTTTGTGGAGCTTTAGACTTCCTGGTGAAGCACAGAAAATTGACAGAATGATGGAGGCCTTTGCCGCTCGATATTGCCAGTGTAACCCCGGTGTCTTTCAGTCCACAGaCACATGCTATGTTCTCTCGTTCTCCGTCATAATGCTCAACACCAGCTTGCATAACCCTAATGTCAGAGACAAGCCCACGGTGGAAAGGTTCATATCCATGAATCGGGGCATCAACGAAGGAGGAGATCTGCCCGAGGAGCTGCTCAGAAATTTATATGAAAGCATCAAGAATGAGCCTTTCAAAATTCCTGAAGACGACGGGAACGATCTAACCCACACGTTCTTTAATCCGGACAGAGAGGGATGGCTGCTAAAACTAGGGGGGAGAGTAAAGACCTGGAAGAGGAGGTGGTTCATTTTGACAGATAACTGTCTGTATTACTTTGAATATACAACAGACAAAGAGCCTCGGGGGATCATTCCACTGGAGAATCTTAGTATAAGGGAGGTGGAGGAACCAAGAAAACCAAATTGCTTTGAGCTCTACAACCCCAGTCATAAGGGGCAAGTAATTAAGGCATGCAAGACAGAGGCTGATGGGAAGGTGGTGGAGGGGAATCACGTGGTTTACAGAATATCCGCACCCACGCCGGAGGAGAAAGAAGAGTGGATCAAATCCATCAAGGCAAGCATTAGCAGGGATCCTTTCTACGACATGTTGGCTACTAGGAAACGGCGAGTGGCTGCTAAAAAGTGAGCCGTAGACTTTCGGAGTTGGGGTTTAATAATCACTCTACAAGCGGAAAACTTCACACGGGATCCTGAAGGTCGCAGGGGGTAAAAGACAGAGACGTGAGCTCTCTGAGGACAAAGAAGGACacgattttaaaaatgatgggGTCTGTATAGGCCCTAAATATTTATCTTCAAACATATTGTGTGGGGAGaacaatgatgatgatgataatgcaATTGTATGCTGAATGTATGTTTGTCAGAAATAACTGCGTTAAGAGTGATGAACGATTCGACTTCGATAAGGTATCCGCTTATGTCATGTGACGGACTAATATAGAGTAACCAGCGCCTCCTGGTGCTTACAACTGGAACTGCTACCGCACATTTCCAGGGATCCTTATGGAGATGTTCTCAAgctaaaagtcaaaatttaagctCTGGCAATGTTTAGATGTGGATGCAATGTATGTAAAGTGTACCAAACTACTGGTGATGTCAGTTCAGAAGTAGTCTATGGATACAGAAAATTGATTGATATGGCAGGGATTCATGctgaaaactttttatttagtgctATGTAATATCAAATATTGTCTTAATTGCAgtagttttaaatgattttattttcatttgcatcaCATCATTATCATCCAAATCAGCAGGACTGGTTGCATTAATTGGACGAGAAAATTATTcagattatatttattatgtttctaATGTTCCTTAATAGGCATAGTAGTATATATCAATTCTGACATTCTTTTATTGCTAATATTATTTGATGTCTTTTTGAGAATAATCCAAACTCTATAGTTTACATCCTTATGGATTCACCTTttgatttaaaagttttttttataagtattttgttgtatttatgtaGTAATGCCAATGTAAACCTATATTGTTTGGTTTTCGCTATGTCTGtaaatagcacacacacacacacacacacacacacacaaataatatcaGAAAAgccataattattttttgtcatttgaactATTTTGGAAAGTCCATTTATCTAAAACTGATGTATATGCAATTTTTGTACACAGCTACTCAGCTGAGACCTTTTAAGTGAAGGCTGTATGGCTCTGCAAAACGTGAACCTCATTTATTCACATAGTTTATTTGAAAGTGTAAAGGAAATACTTATAGATACACTGCAAAAAgatgaatcaaaatgatttcaattaaattaaccACGGTCCACTGTCACCACTGTCCAGTTCCACATAGGACAGCAATAATAGTCATAGTGAAATATAGAGAGTATGATTTATGACACATAAATGCAACAAACAACGAGGCCCCCTTTTCTAAGTTTACCTGTTAAGACAGACAATGCAACCAACCCCATCtgaaatttgtataattttatggaaaggttttgaaattgttttattataacagCTAATATGAGTAAAATATTGTCACTTGTATTCTGCTTAACATTTCTATGGTAAATATGCAGCATGCTctgaagaatgtgtgtgtgtcagtaaaTAGTAATTCAGATATATAAGATGAAACAGGTTTGTCATTACTGTCAATGAAGCCATTGGCCTTGAACTGAAAACTTCATCAGCTGacctaataaaacatttttatgttga
>XM_043254285.1
gtcggTTTTAGAGACACCGAGACAAAACTCTCTCGGTTTCGGAGTTTAAGTTCTTTTGACTGAACGATGCCATCAGCAAAATACAAAACCTGTTTGCTGTGAGGTAATAACGGGGCATTTGAATACATGCAAACGAAGTTAAATATCAGAGGATGTTTTGTTTCAAACAGACAATGGCTTTCTTGAGCTGCCGTCGAATGGATTTCGCATGATTCTTTGGAAGGCAGCAAAAAAACGCATTGCACTCAAGGTGGAAGTCGTGACACAAAAGTGCCTGAAGATCTCTCGCATGAAGAGAGAGATGAACTTTCCAACATTAGACGGAGAAAAAAAGAGCTGCTAGATGACATTGAGCGATTAAAGTATGAAATCTCAGAAGTCATGGCAGAGATTGAACATTTAACGTGTGTCAGAGAGACCAAAAGCACTCAGAGGAACAAGCAGATTGCTGTCGGAAGAAAGAAATTTAATATGGATCCTAAAAAGGGAATCCAATTTCTTTTGGAGAATGATCTTCTGCAGCACACACCTGAGGACATCGCACAGTTCCTCTATAAAGGCGAAGGCTTAAACAAAACTGTCATAGGAGATTATTTAGGGGAACGAGATGACTTCAACATTAAAGTTTTGCAGGCGTTTGTGGAGCTTCATGAGTTTGCTGATCTCAACCTGGTGCAAGCATTGAGGCAGTTTTTGTGGAGCTTTAGACTTCCTGGTGAAGCACAGAAAATTGACAGAATGATGGAGGCCTTTGCCGCTCGATATTGCCAGTGTAACCCCGGTGTCTTTCAGTCCACAGaCACATGCTATGTTCTCTCGTTCTCCGTCATAATGCTCAACACCAGCTTGCATAACCCTAATGTCAGAGACAAGCCCACGGTGGAAAGGTTCATATCCATGAATCGGGGCATCAACGAAGGAGGAGATCTGCCCGAGGAGCTGCTCAGAAATTTATATGAAAGCATCAAGAATGAGCCTTTCAAAATTCCTGAAGACGACGGGAACGATCTAACCCACACGTTCTTTAATCCGGACAGAGAGGGATGGCTGCTAAAACTAGGGGGGAGAGTAAAGACCTGGAAGAGGAGGTGGTTCATTTTGACAGATAACTGTCTGTATTACTTTGAATATACAACAGACAAAGAGCCTCGGGGGATCATTCCACTGGAGAATCTTAGTATAAGGGAGGTGGAGGAACCAAGAAAACCAAATTGCTTTGAGCTCTACAACCCCAGTCATAAGGGGCAAGTAATTAAGGCATGCAAGACAGAGGCTGATGGGAAGGTGGTGGAGGGGAATCACGTGGTTTACAGAATATCCGCACCCACGCCGGAGGAGAAAGAAGAGTGGATCAAATCCATCAAGGCAAGCATTAGCAGGGATCCTTTCTACGACATGTTGGCTACTAGGAAACGGCGAGTGGCTGCTAAAAAGTGAGCCGTAGACTTTCGGAGTTGGGGTTTAATAATCACTCTACAAGCGGAAAACTTCACACGGGATCCTGAAGGTCGCAGGGGGTAAAAGACAGAGACGTGAGCTCTCTGAGGACAAAGAAGGACacgattttaaaaatgatgggGTCTGTATAGGCCCTAAATATTTATCTTCAAACATATTGTGTGGGGAGaacaatgatgatgatgataatgcaATTGTATGCTGAATGTATGTTTGTCAGAAATAACTGCGTTAAGAGTGATGAACGATTCGACTTCGATAAGGTATCCGCTTATGTCATGTGACGGACTAATATAGAGTAACCAGCGCCTCCTGGTGCTTACAACTGGAACTGCTACCGCACATTTCCAGGGATCCTTATGGAGATGTTCTCAAgctaaaagtcaaaatttaagctCTGGCAATGTTTAGATGTGGATGCAATGTATGTAAAGTGTACCAAACTACTGGTGATGTCAGTTCAGAAGTAGTCTATGGATACAGAAAATTGATTGATATGGCAGGGATTCATGctgaaaactttttatttagtgctATGTAATATCAAATATTGTCTTAATTGCAgtagttttaaatgattttattttcatttgcatcaCATCATTATCATCCAAATCAGCAGGACTGGTTGCATTAATTGGACGAGAAAATTATTcagattatatttattatgtttctaATGTTCCTTAATAGGCATAGTAGTATATATCAATTCTGACATTCTTTTATTGCTAATATTATTTGATGTCTTTTTGAGAATAATCCAAACTCTATAGTTTACATCCTTATGGATTCACCTTttgatttaaaagttttttttataagtattttgttgtatttatgtaGTAATGCCAATGTAAACCTATATTGTTTGGTTTTCGCTATGTCTGtaaatagcacacacacacacacacacacacacacacaaataatatcaGAAAAgccataattattttttgtcatttgaactATTTTGGAAAGTCCATTTATCTAAAACTGATGTATATGCAATTTTTGTACACAGCTACTCAGCTGAGACCTTTTAAGTGAAGGCTGTATGGCTCTGCAAAACGTGAACCTCATTTATTCACATAGTTTATTTGAAAGTGTAAAGGAAATACTTATAGATACACTGCAAAAAgatgaatcaaaatgatttcaattaaattaaccACGGTCCACTGTCACCACTGTCCAGTTCCACATAGGACAGCAATAATAGTCATAGTGAAATATAGAGAGTATGATTTATGACACATAAATGCAACAAACAACGAGGCCCCCTTTTCTAAGTTTACCTGTTAAGACAGACAATGCAACCAACCCCATCtgaaatttgtataattttatggaaaggttttgaaattgttttattataacagCTAATATGAGTAAAATATTGTCACTTGTATTCTGCTTAACATTTCTATGGTAAATATGCAGCATGCTctgaagaatgtgtgtgtgtcagtaaaTAGTAATTCAGATATATAAGATGAAACAGGTTTGTCATTACTGTCAATGAAGCCATTGGCCTTGAACTGAAAACTTCATCAGCTGacctaataaaacatttttatgttga

Function

symbol description
cyth3a Acts upstream of or within epiboly involved in gastrulation with mouth forming second. Is expressed in blastoderm. Orthologous to human CYTH3 (cytohesin 3).
cyth3 Enables guanyl-nucleotide exchange factor activity and phosphatidylinositol-3,4,5-trisphosphate binding activity. Involved in Golgi vesicle transport. Located in cytosol; nucleoplasm; and plasma membrane. Is extrinsic component of cytoplasmic side of plasma membrane.

NR:

description
PREDICTED: cytohesin-3-like

GO:

id name namespace
GO:0043087 regulation of GTPase activity biological_process
GO:0032012 regulation of ARF protein signal transduction biological_process

KEGG:

id description
K18441 CYTH; cytohesin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254284.1 True 3057 mRNA 0.39 13 7763861 7777555
XM_043254285.1 False 3043 mRNA 0.39 13 7762989 7777555

Neighbor

gene id symbol gene type direction distance location
atad1b atad1,atad1b,LOC107680273,LOC107669218 coding upstream 15203 7742835 ~ 7747786 (+)
rnls rnls,LOC107669231,LOC107584138,LOC107680274,LOC107594162 coding upstream 66260 7663106 ~ 7696729 (+)
ankrd22 ankrd22,LOC107753431,LOC107758445,LOC107584139,LOC107594161 coding upstream 111245 7648181 ~ 7651744 (+)
acta2 acta2,LOC107683715,LOC106531354 coding upstream 126841 7630560 ~ 7636148 (+)
ch25h ch25h,LOC107753436,LOC107584143,LOC107669234,LOC107683723,LOC107758440,LOC107594211 coding upstream 145976 7615839 ~ 7617013 (+)
pms2 pms2,LOC107753423,LOC107594169,LOC107724702 coding downstream 18705 7796260 ~ 7802299 (+)
rsph10b LOC107669165,LOC107584188,LOC107753448 coding downstream 25279 7802834 ~ 7807610 (+)
bhlha15 bhlha15,LOC107669184,LOC107753453,LOC107584229,LOC107594213,LOC107699868 coding downstream 73953 7851508 ~ 7854838 (+)
tmem130 tmem130,LOC107669166 coding downstream 109132 7886687 ~ 7890487 (+)
LOC122355373 trrap,LOC107669193,LOC107699870,LOC107734152 coding downstream 124559 7902114 ~ 7971554 (+)
G86268 NA non-coding upstream 39128 7720392 ~ 7723861 (+)
G86283 NA non-coding upstream 43706 7718984 ~ 7719283 (+)
G86275 NA non-coding upstream 61190 7701343 ~ 7701799 (+)
G86219 NA non-coding upstream 258490 7502578 ~ 7504499 (+)
G86202 NA non-coding upstream 374008 7387668 ~ 7388981 (+)
G86374 NA non-coding downstream 69003 7846558 ~ 7846862 (+)
G86460 NA non-coding downstream 279376 8056931 ~ 8060176 (+)
G86540 NA non-coding downstream 420539 8198094 ~ 8198410 (+)
G86536 NA non-coding downstream 426028 8203583 ~ 8204143 (+)
LOC122355856 NA non-coding downstream 426590 8204145 ~ 8206748 (+)
G86143 NA other upstream 454760 7307924 ~ 7308229 (+)
G86142 NA other upstream 458141 7303138 ~ 7304848 (+)
G86029 NA other upstream 1240418 6521829 ~ 6522571 (+)
G86019 LOC107570179 other upstream 1321463 6440821 ~ 6441526 (+)
G85986 adprh,LOC108411014,LOC107726130,LOC105894051,LOC108274007 other upstream 1546422 6214919 ~ 6216567 (+)
LOC122355675 NA other downstream 38268 7815823 ~ 7844083 (+)
msrb1b msrb1b,LOC100705913 other downstream 327593 8105148 ~ 8106780 (+)
hbbe2 hbbe2,LOC107734191,LOC105910203 other downstream 418409 8195964 ~ 8197904 (+)
arsg arsg,LOC107734203,LOC107660857,LOC107692046,LOC107554066 other downstream 1058893 8836448 ~ 8852449 (+)
pkd1b LOC107723630,LOC107665861,LOC107556563 other downstream 1508108 9285663 ~ 9306831 (+)

Expression


Co-expression Network