raraa (raraa,rara,LOC107716487,LOC107745620,LOC107571738,LOC107660476,LOC107678286,LOC105935622)


Basic Information

Item Value
gene id raraa
gene name raraa,rara,LOC107716487,LOC107745620,LOC107571738,LOC107660476,LOC107678286,LOC105935622
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 3766347 ~ 3881783 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254294.1
agacacacagcacacatgACTCTCCAATGGCCGCTGCCTAATACGGGGTTCTTGctcaacttttattaaaacacatctgAAGGCTCTCGTGACGCGCATGTTGTTATTTTCTTAAACGGACAGGGAAGTTTACTGCAGCATCGTGCTGATGAAACTGCGCGGCAGGAGTTGAGGCGGTGAGCGGCAGCGGGGGCGGAGTCAACAGGTTCAGGAATTCTAACAGAAGAGGAAAGTGGAGCACATCACAAATGCAGGCTCTTGGATTCATTAAGCGGAATCAAATCTTTTTGGAAATAAACTCCGTAGACCTGTGTGATATGGGAAACAACCCCTACAGAAACCCCCCTGGCTGCAAAAAAGAGTCACTCCACCATTCATCTGCCTAGACACACCGTTTTCTACCAGTGTCACACGGAATAAGCACGTTGACTCCTTCTCTGAATGCTCTTATGGGTAAATAACCCCcagaaagcattttatttgaacGTCATTTTGGATTCTTCCGTGTGATCGTGGGCGAACTCTAGTGGTAGCCATGTCTGGTAAGGGCAACCCCAGCCCACACCTCAATGGCTTCCCAATGGCCCACTTTTCATATTTCTTTCCACACATGCTGGGGGGGCTTTCTCCACCCTCTCTGCCCACCCTACCCCTCAGTGGATACAGCACACCATCACCGGCCAcaaTCGAGACCCAGAGTACGAGCTCAGAGGAGATTGTCCCGAGCCCACCGTCTCCGCCTCCTCCTCCCCGCGTCTACAAGCCCTGCTTTGTGTGTCAGGACAAATCTTCAGGGTACCACTATGGCGTCAGTGCCTGTGAGGGCTGCAAGGGCTTCTTCAGGCGGAGTATCCAGAAGAACATGGTCTACACGTGCCACAGAGAGAAGAACTGCATCATCAACAAAGTCACCCGCAACCGCTGTCAATACTGCCGGCTGCAGAAGTGCCTGGAAGTGGGGATGTCCAAAGAATCGGTGAGGAATGACaggaataagaaaaagaaagaagagaaaaagccCGAATGCACAGAAAACTACACGCTGAGCCCAGACACAGAGCAGATGATTGACAGAGTCAGGAAAGCCCACCAAGAGACCTTCCCCTCGCTGTGTCAACTCGGCAAATACACCACGAGTAACAGCTCGGAGCGGCGCGTCTCACTGGACGTGGATCTGTGGGACAAGTTCAGCGAGCTCTCGACCAAGTGCATCATAAAGACGGTGGAGTTCGCCAAGCAGCTGCCAGGATTCACCACCCTCACCATCGCAGACCAGATCACACTGCTGAAGGCCGCTTGCCTCGACATACTGattctGAGGATCTGTACCCGCTACACACCTGAGCAAGACACCATGACGTTCTCTGATGGGTTAACGCTGAACCGAACGCAGATGCACAACGCCGGCTTCGGCCCGTTAACAGACCTGGTGTTTGCCTTCGCCAATCAGCTACTACCGCTAGAGATGGATGACGCAGAGACAGGGCTGCTCAGTGCTATTTGTCTGCTCTGTGGAGATCGGCAGGACCTGGAGGAAGCTGATAAAGTGGACATACTGCAGGAACCGCTGCTGGAAGCACTGAAGATCTACGTGAGGAACAGGAGGCCACACAAACCTCACATGTTCCCGAAGATGCTGATGAAAATTACCGACCTGAGGAGCATCAGCGCCAAGGGGGCAGAGCGTGTGATTACCCTGAAGATGGAGATTCCCGGCTCCATGCCTCCTCTCATCCAGGAGATGTTGGAGAACTCTGAGGGTTTGGAGAGCTCTTCAGGCGGGATCAGTTCACGGGCCTCCGGCGCTCCTCCAGGCAGCTGTAGCCCCTCCCTTTCGCCAAGCTCCGCCCAGAGCAGCCCACCCACACAGTCGCCATGACGCTCATCGGTGCTGCCCTCAGTAGCCACTTACCGACTACTGTGTGCCCTCCCCGACATGACAGCGGACATGTTCAAAAGCACGCGCTCATCTGCCGTGTTCCTCAGAGACTAAGGGGGGGGGTCAAAGGTGTGTCGCCggaattttgttgttttctttcctcAGATCAGACTGTGATTGTATTCCTCCTCGATTTCGCCACTCCGAAGGGAGGAAGACCGCTGGAGGGCGAAGACAAAACGCGCAAAATTTATGGACAAACGTGTAGAAGGAATCAAAGACTTTTCTTCTGTTTCGATTCTCATGGCTTGGGCTTCTGTTTCAAATGACCAGAGACTGATTTCCtacaaactaaatatatatatatataaatatatagagaggaaaaaaaacgtgGAATGTCTGTGATTGAGAACAGAATGCAATGCGGACTTGATGTAAAGATGCAAATGAATttcctcattttctttctctttacgCCTGTGAATAGGCAGAGAgtgaattgttttatttcagactgatgatgatgtttttcatggagaagaaaaaaaacattgaaaggACTATTAATTTCCACTCACAAAATTGTGCACAGAAGATATAAAAATGTCGCAACAAACA
>XM_043254295.1
CCTCTCACACTCTGAGCAGGTCCGAGGGCTCGAACACACGGTAACCGCGCGGATTAataacacgcgcacacacaagCCCGTTAAACGCGCATTTGTGTGCTGTTTATAATCGGGAGGACGCTAAACACCCAAAAAGGATACTGTTTAATATAGCTGCACGAGTTTTATGGTATCACGGAGACACAAACGAGACAAAATAATCACATCACTAAATCGGAGCTTCGCAAATAATATTGGACCAAACTCACCGCTCAACACTGGACGTTTGATGGATTTACTGATGCCTCGTTCTTTCTGTATAGTGTTATTGCATTAGCCGATCGAGATTTGGAGTAAATACCGTATATATGGTCTAAAACATATACTCTTGCACTTTTGAGACACTGTTGGTCCcgtatgtgaatatatttttgcaagAAGTGTTTCAGCGGACGTCGATTGGACTGATCTCTGACCATGCACAAGGGCTTCGGCTTTAGTTTTACTCGCTTCTGTAGTTCCTGATCTCTTCTGGGAATAGCTGGGATGTCTGGGATGGATCCATCTCTGTGTTAAAGCTCTATGCGAAGTGTACGGTCGTGGATCAGCTGTTGCCTTGAGGAATCGAGTCCGACCTGATCATGTACGAGAGCGTGGATGTGAACCCTTTCCTCATGATGGATTACTATAATCAGAGCAGAGGATGTCTGATCCCGGACAAGATGCCCCATCCCTTCAGCTCATCCATCAGACATCAGCACTGGAGCGGATCCAACCACTcaaTCGAGACCCAGAGTACGAGCTCAGAGGAGATTGTCCCGAGCCCACCGTCTCCGCCTCCTCCTCCCCGCGTCTACAAGCCCTGCTTTGTGTGTCAGGACAAATCTTCAGGGTACCACTATGGCGTCAGTGCCTGTGAGGGCTGCAAGGGCTTCTTCAGGCGGAGTATCCAGAAGAACATGGTCTACACGTGCCACAGAGAGAAGAACTGCATCATCAACAAAGTCACCCGCAACCGCTGTCAATACTGCCGGCTGCAGAAGTGCCTGGAAGTGGGGATGTCCAAAGAATCGGTGAGGAATGACaggaataagaaaaagaaagaagagaaaaagccCGAATGCACAGAAAACTACACGCTGAGCCCAGACACAGAGCAGATGATTGACAGAGTCAGGAAAGCCCACCAAGAGACCTTCCCCTCGCTGTGTCAACTCGGCAAATACACCACGAGTAACAGCTCGGAGCGGCGCGTCTCACTGGACGTGGATCTGTGGGACAAGTTCAGCGAGCTCTCGACCAAGTGCATCATAAAGACGGTGGAGTTCGCCAAGCAGCTGCCAGGATTCACCACCCTCACCATCGCAGACCAGATCACACTGCTGAAGGCCGCTTGCCTCGACATACTGattctGAGGATCTGTACCCGCTACACACCTGAGCAAGACACCATGACGTTCTCTGATGGGTTAACGCTGAACCGAACGCAGATGCACAACGCCGGCTTCGGCCCGTTAACAGACCTGGTGTTTGCCTTCGCCAATCAGCTACTACCGCTAGAGATGGATGACGCAGAGACAGGGCTGCTCAGTGCTATTTGTCTGCTCTGTGGAGATCGGCAGGACCTGGAGGAAGCTGATAAAGTGGACATACTGCAGGAACCGCTGCTGGAAGCACTGAAGATCTACGTGAGGAACAGGAGGCCACACAAACCTCACATGTTCCCGAAGATGCTGATGAAAATTACCGACCTGAGGAGCATCAGCGCCAAGGGGGCAGAGCGTGTGATTACCCTGAAGATGGAGATTCCCGGCTCCATGCCTCCTCTCATCCAGGAGATGTTGGAGAACTCTGAGGGTTTGGAGAGCTCTTCAGGCGGGATCAGTTCACGGGCCTCCGGCGCTCCTCCAGGCAGCTGTAGCCCCTCCCTTTCGCCAAGCTCCGCCCAGAGCAGCCCACCCACACAGTCGCCATGACGCTCATCGGTGCTGCCCTCAGTAGCCACTTACCGACTACTGTGTGCCCTCCCCGACATGACAGCGGACATGTTCAAAAGCACGCGCTCATCTGCCGTGTTCCTCAGAGACTAAGGGGGGGGGTCAAAGGTGTGTCGCCggaattttgttgttttctttcctcAGATCAGACTGTGATTGTATTCCTCCTCGATTTCGCCACTCCGAAGGGAGGAAGACCGCTGGAGGGCGAAGACAAAACGCGCAAAATTTATGGACAAACGTGTAGAAGGAATCAAAGACTTTTCTTCTGTTTCGATTCTCATGGCTTGGGCTTCTGTTTCAAATGACCAGAGACTGATTTCCtacaaactaaatatatatatatataaatatatagagaggaaaaaaaacgtgGAATGTCTGTGATTGAGAACAGAATGCAATGCGGACTTGATGTAAAGATGCAAATGAATttcctcattttctttctctttacgCCTGTGAATAGGCAGAGAgtgaattgttttatttcagactgatgatgatgtttttcatggagaagaaaaaaaacattgaaaggACTATTAATTTCCACTCACAAAATTGTGCACAGAAGATATAAAAATGTCGCAACAAACA

Function

symbol description
raraa Enables nuclear receptor activity. Involved in hindbrain morphogenesis and response to retinoic acid. Acts upstream of or within liver development. Predicted to be located in nucleus. Is expressed in several structures, including endoderm; gonad; mesoderm; nervous system; and neural keel. Human ortholog(s) of this gene implicated in acute promyelocytic leukemia; lung carcinoma (multiple); and syndromic microphthalmia 12. Orthologous to several human genes including RARA (retinoic acid receptor alpha).
rara Enables several functions, including DNA binding activity; nuclear receptor activity; and protein kinase B binding activity. Involved in several processes, including cellular response to estrogen stimulus; regulation of gene expression; and regulation of leukocyte differentiation. Located in several cellular components, including actin cytoskeleton; chromatin; and nuclear lumen. Part of protein-containing complex. Implicated in acute promyelocytic leukemia. Biomarker of mood disorder.

NR:

description
titin-like isoform X1

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0021575 hindbrain morphogenesis biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0001889 liver development biological_process
GO:0048384 retinoic acid receptor signaling pathway biological_process
GO:0032526 response to retinoic acid biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08527 RARA, NR1B1; retinoic acid receptor alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254294.1 False 2500 mRNA 0.50 9 3766347 3881783
XM_043254295.1 True 2576 mRNA 0.49 8 3766347 3796743

Neighbor

gene id symbol gene type direction distance location
vps35l zgc:163107,cunh16orf62,cssa28h16orf62,LOC107678404,LOC107716486,LOC107660477 coding downstream 1896 3753578 ~ 3764451 (-)
c12h10orf88 si:rp71-19m20.1,LOC107716483,LOC107598032 coding downstream 35898 3725084 ~ 3730449 (-)
LOC122355770 LOC107660482,LOC107716480,LOC107678383,LOC107745560,LOC108435041 coding downstream 226192 3497872 ~ 3540155 (-)
LOC122355769 grid1,grid1b,LOC107598047,LOC106577051,LOC106607602 coding downstream 368812 3393655 ~ 3397535 (-)
LOC122355866 grid1,grid1a,LOC107716022,LOC107654854,LOC106577051 coding downstream 682994 3004429 ~ 3083353 (-)
top2a top2a,LOC107598028,LOC107660475,LOC107091052 coding upstream 35637 3917420 ~ 3931659 (-)
csf3a LOC107716456,LOC107598027,LOC107660487 coding upstream 81532 3963315 ~ 3966302 (-)
lrrc3ca lrrc3ca,lrrc3c,LOC107598050,LOC107716457,LOC107660473,LOC107678436 coding upstream 92977 3974760 ~ 3982557 (-)
trnal-uag_4 NA coding upstream 113308 3995091 ~ 3995185 (-)
trnal-aag_33 NA coding upstream 113468 3995251 ~ 3995332 (-)
G85389 NA non-coding downstream 45324 3615842 ~ 3721023 (-)
G85372 NA non-coding downstream 391396 3373377 ~ 3374951 (-)
G85355 NA non-coding downstream 606604 3156816 ~ 3159743 (-)
G85342 NA non-coding downstream 728763 2950836 ~ 3037584 (-)
G85257 NA non-coding downstream 818958 2919185 ~ 2947389 (-)
G85435 NA non-coding upstream 78980 3960763 ~ 3961353 (-)
G85487 NA non-coding upstream 236022 4117805 ~ 4175223 (-)
G85511 NA non-coding upstream 294207 4175990 ~ 4176266 (-)
G85515 NA non-coding upstream 301799 4183582 ~ 4188337 (-)
G85541 NA non-coding upstream 386220 4268003 ~ 4269616 (-)
G85366 NA other downstream 466659 3258531 ~ 3299688 (-)
LOC122355711 rara,LOC107700643,LOC107717720,LOC107565243,LOC107563215,LOC107719850,LOC108434941,LOC108261354,LOC107554136,LOC107737746,LOC108276117 other downstream 663032 3089629 ~ 3103315 (-)
G85232 LOC107663296,LOC107583514,LOC107733536 other downstream 984994 2767908 ~ 2781353 (-)
jmjd1cb jmjd1c,LOC107745648,LOC107654065,LOC107695544 other downstream 1481295 2173988 ~ 2285052 (-)
ank3b ank3b,LOC107654059,LOC107695539 other downstream 1818935 1814083 ~ 1947412 (-)
kcnh6b LOC107684759,LOC107753307,LOC107573422 other upstream 335621 4217404 ~ 4230039 (-)
LOC122355775 NA other upstream 416084 4297867 ~ 4305215 (-)
trnal-uag_49 NA other upstream 463602 4345385 ~ 4345467 (-)
trnal-uag_50 NA other upstream 465915 4347698 ~ 4347779 (-)
trnal-aag_58 NA other upstream 466079 4347862 ~ 4347942 (-)

Expression


Co-expression Network