arl4d (arl4d,LOC107552768,LOC107706901,LOC107582746,LOC107727318)


Basic Information

Item Value
gene id arl4d
gene name arl4d,LOC107552768,LOC107706901,LOC107582746,LOC107727318
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11951851 ~ 11953983 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254303.1
AGCTCCACTTTCATCTCTGAGGTCACTGGTATCAGAGGGAACCGGGACTCTGGAAAAATGATCATTGGTTTGGGTCGTTTGGATAACCGGTCGTCTAAGTTTTTAAAGTGAGACTTGGAAACGATGCGCATTGCAAGATAAACACCTTTTAGGTTCCACACGGTGCCTCCGATCTTACAGCACCCCTGTCTGCCTGTAGTACCTTTGAAGTAGGTGCAAATGCCAAACACTTAGACAAATCTACTTCTCCTTACAAGAGGGCGCGAAAACCCAAGTTGCCATGGGAAACCAGTTGACAGAGATTGCCCCCAATACACCGTTCCTGCCTAACTTCCAGTCCCTCCACGTTGTGGTAATTGGTTTGGACTCCGCGGGCAAAACCTCGCTTCTCTACAGACTGAAACTGAAGGAATTTGTTGAAACTATCCCAACGAAGGGATTTAACACTGAGAAGATTAAAGTTCCTGTTGGAAATGGCCGTGCCATTACCTTCCAGGTGTGGGATGTGGGTGGTCAGGAGAAGCTTCGGCCTTTGTGGAAGTCCTACACACGGCGCACAGACGGCATGGTCTTTGTAGTGGACTCCACGGAGGTGGAGCGCATGGAGGAGGCTAAGGTGGAGCTGCACAAGATCACACGCACGTCAGAGAACCAAGGAGTGCCAGTGTTGGTTTTGGCTAACAAACAGGACCTTCCAGTCGCGCTGCCTGTTACTGACGTGGAGAAGGTTTTGGCTGTACATGAACTGAGTGCCTCCACCCTGCACCATGTGCAAGGATGCAGTGCGGTCGACGGGCAAGGGTTGCAGCCGGGTTTGGAAAAACTGTATGAAATGATCCTCAAACGAAAGAAAATTGTGAAGcacagcaagaaaaaaagatgagctGAACGGGACGGCGTacttgagaagctcctcggttgTAGGATTTTGCATCCAATCCCCGAATGAAGGAAATGCTCCAGATGGCCCAGTGGTCGGGAGAAAACAGATTTGACCTTTATGTGTCACACAGTATTGAACTGCTTTCTTCCATGCCTAGTAATTGCTGTGCAGCTCCCCTTTGTAATCAAGGAAAATGTGATAGCATTGATAGGCTGTAGTTTCAGCAGAATTTAAGCCTACGTCCttgcctttttttcatttttcaagcaAGAAAGAGACTAAATTATAGCTTGGCAACATTTTCACCAGACTTCAGACATAATTTTCCCCCACAAACGTTACGTTGATTGCCAGTGCCGACATAATAAAAGGCCATATAAATGTTCACGCTATGCTAGTTGTGAAACTGAAGTCTTAAGCGAATCCCTGAGGTTCACTCttcacaattttgtttttacacgctgtaaatagtttttgtattatgctgtagaattaataaattatagaCTGCTTTGACACA

Function

symbol description
arl4d Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human ARL4D (ADP ribosylation factor like GTPase 4D).

NR:

description
PREDICTED: ADP-ribosylation factor-like protein 4D

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07945 ARL4; ADP-ribosylation factor-like protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254303.1 True 1403 mRNA 0.46 2 11951851 11953983

Neighbor

gene id symbol gene type direction distance location
tmem106a LOC107706900,LOC107552767,LOC107669487,LOC107666933,LOC107727317 coding upstream 2219 11946071 ~ 11949632 (+)
skap1 skap1,LOC107666922,LOC107727295,LOC107669469 coding upstream 19717 11905082 ~ 11932134 (+)
hoxb1b hoxb1b,LOC107669476,LOC107552742,LOC107706871 coding upstream 54281 11879440 ~ 11897570 (+)
hoxb5b hoxb5b,LOC107706869,LOC107727298,LOC107666910,LOC107582850,LOC107669477 coding upstream 64730 11885009 ~ 11887121 (+)
hoxb8b hoxb8b,LOC107669483,LOC107706868,LOC107552737,LOC107727302,LOC107666913 coding upstream 76172 11873649 ~ 11875679 (+)
dusp3a dusp3a,dusp3,LOC107669488,LOC107552769,LOC107666929,LOC107582744 coding downstream 17712 11971695 ~ 11981994 (+)
sost LOC107552770,LOC107706903,LOC107582741,LOC107743777 coding downstream 35298 11989281 ~ 11993628 (+)
meox1 meox1,LOC107706874,LOC107669480,LOC107666908,LOC107743797 coding downstream 91540 12045523 ~ 12051003 (+)
etv4 etv4,LOC107552771,LOC107706904 coding downstream 126114 12080097 ~ 12102703 (+)
spata20 spata20 coding downstream 159274 12113257 ~ 12147867 (+)
G87337 chmp2a,LOC106589279 non-coding upstream 128529 11822063 ~ 11823322 (+)
G87343 NA non-coding upstream 148224 11803287 ~ 11803627 (+)
G87341 NA non-coding upstream 151224 11800356 ~ 11800627 (+)
G87331 NA non-coding upstream 207446 11741981 ~ 11744405 (+)
G87285 NA non-coding upstream 454859 11484193 ~ 11496992 (+)
G87617 NA non-coding downstream 43307 11997290 ~ 11997512 (+)
G87621 NA non-coding downstream 113420 12067403 ~ 12067629 (+)
G87644 NA non-coding downstream 195440 12149423 ~ 12149637 (+)
LOC122355133 NA non-coding downstream 197169 12151152 ~ 12156922 (+)
G87664 NA non-coding downstream 203603 12157586 ~ 12157815 (+)
nbr1a nbr1,LOC107669491,LOC107706899,LOC107582742,LOC107727312,LOC107666919 other upstream 6216 11936841 ~ 11945635 (+)
hoxb6b hoxb6b,LOC107669478,LOC107706870,LOC107582852,LOC107552740,LOC107666911,LOC107727299 other upstream 67754 11882151 ~ 11884097 (+)
G87315 zeb1b,LOC107666916,LOC107706887,LOC107727309,LOC107582755,LOC107552760,LOC107669492 other upstream 250196 11694844 ~ 11701655 (+)
svila LOC107686370,LOC107657481,LOC107584371,LOC107749370,LOC107549408 other upstream 1369306 10523143 ~ 10582545 (+)
LOC122355633 rhoq other upstream 1452153 10497425 ~ 10499698 (+)
G87817 NA other downstream 778781 12732764 ~ 12737649 (+)
gall si:rp71-1c10.8,LOC107677873,LOC107743798,LOC107675007,LOC107566084,LOC107754084,LOC107563807 other downstream 806391 12760374 ~ 12762731 (+)
G88016 NA other downstream 1487960 13441943 ~ 13444915 (+)
G88082 NA other downstream 1641811 13595794 ~ 13596348 (+)
gucy2g gucy2g,LOC107702423,LOC107755438,LOC107722192,LOC107581632,LOC107684125,LOC107571103,LOC108273537 other downstream 1901712 13855695 ~ 13864743 (+)

Expression


Co-expression Network