rab40b (rab40b,LOC107702472,LOC107722231,LOC107581578,LOC107566485,LOC107755515,LOC107684050,LOC108443562)


Basic Information

Item Value
gene id rab40b
gene name rab40b,LOC107702472,LOC107722231,LOC107581578,LOC107566485,LOC107755515,LOC107684050,LOC108443562
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 14089844 ~ 14102103 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254310.1
TTTTCTGTTTAGGGAGGCTGATAGAAGAGAGGGATCGCGGCTGAGAGCTGAATGGACCAGGTTTGCTCGAAATGTAAAGATGACAAAACATTAGGAGTGTTTTATGAAGCTTAACGTTTATTATACAAGTATAAACAACCGATTTTAAGAAGTTACTTGCCTTTGGTtactatactgtaaaaatacgaGAGTCTTTATTTATCTACTAATGTGACGCAACAGCATCAGTGGATCCACAACCAGAATCTTTGAACAATAGGACAAGCTTTAGTGTAGTGGACATGAGATTCTGAACACAGTAGAGACCAGACAGTTACATGATGTACCAGAATGGGTCATCGGGCTGATGTGAAGATGAACCACAGGAGCAGCCCAGCAAAAGCTTATGATTTCCTCCTGAAATTCCTGCTGGTTGGAGACAGTGATGTTGGGAAAGGGGAAATACTGGCCAGTCTACAGGATGGGTCCAGTGAGTCACCCTATGGATACAATATGGGAATTGACTACAAGACAACTACCATACTGCTTGATGGACGCAGAGTCAAGCTCCAGCTTTGGGATACCTCAGGACAAGGCAGATTCTGCACCATATTTCGCTCATATTCCAGAGGAGCACAGGGTGTTATCCTTGTATACGACATCACAAACCGGTGGTCTTTTGATGGCATCGACAGATGGATTAAAGAGATCGATGAGCATGCACCAGGTGTTCCTAAAATCCTGGTGGGAAACAGGCTTCACCTGGCCTATAAACGTCAGGTGACCACCGAGCACGCCCAGGCTTTCGCAGAGCGACTGGGGGTCACATTCTTTGAGGTCAGCCCTCTCTGTAACTTCAACATTACTGAGTCCTTCACCGAGCTGGCCCGAATTGTGCTTATGAGGCATGGCATGGAGCGACTTTGGAGACCCAATAAAGTGTTGAGTCTGCAGGACCTTTGCTGTCGTTCCATCGTTTCCTGCACTCCAGTGCACCTTGTGGACAAACTTCCCCTTCCTGTTGCCTTAAAGAGCCATCTGAAGTCCTTCTCCATGGCCAACGGCCTGAATGCCAGGATGATGCACGGTCGTTCCTACTCGGTCATAGCCAGCAGCGCTAAAAAGAGGAACGGAACCAAAAAATCCAAAATCATCTACCCACCGTTGAGCCCATCCCAGAACTGCGCACGGACGAGCTGCAAGATTTCATAGATGAATGCAGTACACAATGCAATTTAAACAAGGAGCTAGTGTTCAAAACCACCACAGTCTTAGAATAAATAAGGACAAGTTAGAGAACTGTGGCCTGTGAGGTCTTCGATATATTAAGTGTTTGACCAAACTTGTTCCTCATGTTGGGTTTGTTTAAAACACATGGCCATATCCAATTGTGATTGCTGGACAGATGTACAAGAGGGCATCTGTTTCTAAGTGTTGCCAAGCCTTTATAATGCTCtgcattgtttaaatatatgtacaagTTCTTTTGTCTTGTAAATGTATTGATGGTACTGCATTTTCCTGTGGAGGACTCTTTTTGCTACTGAACTTGGACCAAGCCAGCAGGAGAAACAAACAGCTTTCCTGTTTTGTGATCACTTTCACAAGGGACCTTACTGATAAGTAATACCAGCTTAATTTcctttaatacttttattcagacaCTTTTCAGGGGCTTAGAGAGTCAAGGTTGAGACACGCAGCtctttgtattgtgtatataatttgttttgtttgatacTACATTGTTAGAATTCTTAATTATTGTGATACACTTGATCTGTGACCAATATTGTTATTGAACAATACGTTTATATGGGAAACACACCAAAGACGTGCAAGATTAAAATGTGGCTTCATTTgccacatttaaaaacaacgctaatatttcagatttacaCTGCAAGCAAACAGAAATTTCTAACATGCTATCATATCAGGTTTTAAATAAAGCTCAACGATGAAATCA

Function

symbol description
rab40b Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in protein localization to plasma membrane. Predicted to act upstream of or within intracellular signal transduction. Predicted to be active in endosome; plasma membrane; and synaptic vesicle. Is expressed in olfactory placode. Human ortholog(s) of this gene implicated in deafness-intellectual disability, Martin-Probst type syndrome. Orthologous to human RAB40AL (RAB40A like); RAB40A (RAB40A, member RAS oncogene family); and RAB40B (RAB40B, member RAS oncogene family).

NR:

description
ras-related protein Rab-40B-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0016567 protein ubiquitination biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07928 RAB40; Ras-related protein Rab-40

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254310.1 True 1948 mRNA 0.43 7 14089844 14102103

Neighbor

gene id symbol gene type direction distance location
grin2cb grin2c,LOC107755516,LOC107702470,LOC107722186,LOC107684146,LOC107581635 coding downstream 8101 14043571 ~ 14081743 (-)
nat9 LOC107702469,LOC107566461,LOC107581577,LOC107722187 coding downstream 86751 14000678 ~ 14003093 (-)
tectb tectb,LOC107755437,LOC107702437,LOC107566341,LOC107581573,LOC107684045,LOC107722201 coding downstream 217289 13864826 ~ 13872555 (-)
acsl5 acsl5,LOC107702457,LOC107566323,LOC107722228,LOC107755526,LOC107581566,LOC107684041 coding downstream 235071 13846173 ~ 13854773 (-)
vti1a vti1a,LOC107702459,LOC106589328,LOC107566351 coding downstream 250388 13719671 ~ 13839456 (-)
LOC122355098 cox11,LOC107702474,LOC107566498,LOC107755514,LOC108443564,LOC102229253 coding upstream 829 14102932 ~ 14105922 (-)
si:ch73-256g18.2 NA coding upstream 41500 14143603 ~ 14146727 (-)
LOC122355813 LOC107755405,LOC107581672,LOC107684149,LOC107722193,LOC107755509,LOC107702441 coding upstream 133137 14235240 ~ 14239646 (-)
LOC122355870 enpp7.2,LOC107755509,LOC107702441,LOC107581672,LOC107755405,LOC107566788,LOC107722193 coding upstream 138296 14240399 ~ 14243447 (-)
c1qtnf1 LOC107702481,LOC107755506,LOC107566571,LOC107722189,LOC107581674,LOC107684055 coding upstream 560104 14662207 ~ 14670662 (-)
G88206 NA non-coding downstream 93892 13994372 ~ 13995952 (-)
G88205 NA non-coding downstream 95658 13993660 ~ 13994186 (-)
G88146 NA non-coding downstream 195486 13824600 ~ 13894358 (-)
LOC122355666 NA non-coding downstream 377303 13709055 ~ 13712541 (-)
G88035 nrap,LOC107702452,LOC107755535 non-coding downstream 628599 13460145 ~ 13461245 (-)
G88233 NA non-coding upstream 29816 14131919 ~ 14133138 (-)
G88355 NA non-coding upstream 296257 14398360 ~ 14398928 (-)
G88384 NA non-coding upstream 578814 14680917 ~ 14684300 (-)
G88381 NA non-coding upstream 604217 14706320 ~ 14709357 (-)
G88403 fasn,LOC107702482,LOC107579490 non-coding upstream 618412 14720515 ~ 14721234 (-)
srsf2a srsf2,LOC107702465,LOC107566380,LOC107684046 other downstream 113333 13972882 ~ 13976511 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107702422,LOC107750316,LOC107566231,LOC106949585,LOC106589326 other downstream 398504 13609420 ~ 13691340 (-)
entpd1 LOC107707825,LOC107755533,LOC107581561,LOC107702455,LOC107684037,LOC107566185 other downstream 549543 13523668 ~ 13540301 (-)
LOC122355808 LOC107684141,LOC107702421,LOC107581556,LOC107684142,LOC107708119,LOC107708127 other downstream 657649 13424308 ~ 13432195 (-)
G87845 LOC107675011 other downstream 1337166 12751904 ~ 12752678 (-)
G88250 LOC107702476 other upstream 45944 14148047 ~ 14150005 (-)
G88365 NA other upstream 439463 14541566 ~ 14643780 (-)
LOC122355209 NA other upstream 600465 14702568 ~ 14706251 (-)
ndufaf8 NA other upstream 1191730 15293833 ~ 15295240 (-)
si:dkey-21c1.1 tepsin,si:dkey-21c1.1,LOC107601406,LOC107755426,LOC107684135,LOC107749856,LOC107601412,LOC107581605,LOC107749858 other upstream 1198194 15300297 ~ 15306509 (-)

Expression


Co-expression Network