hectd2 (hectd2,LOC107584154,LOC107758436,LOC107594154,LOC107753452)


Basic Information

Item Value
gene id hectd2
gene name hectd2,LOC107584154,LOC107758436,LOC107594154,LOC107753452
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7504716 ~ 7521406 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254313.1
ATCAAGGTCACAATAAAAGAAAGCTGACGCAAGAGAACCTGACCCCCTTGAGACCGGAGCTTCTAACATTCACATAAcaaataataagataataaacAACCATAAATAAATCCACTATAGTGGGGGAAAATTATGACAATTTACAAAAACTAAGTTTTTTCCCCTTTGATACCAGTCCAAACAAACTGTGATTTTGATGTTACATACAAATACAGTTTGATGTTACATACAAATACGAAAGATCATAATTAGAGGTGTGCAATAAATCTGACTCAGCAGTGTTACGTCGAGGCAGCGGCCGTATCCAAGTCCGTAACTACAaacctcatcatcatcatcatcatcctcaacAACATGGCGCCAGCGTACAGCTGGACCGTACATAGACGCCACGGCACTTCTTCAACAAGTTACTTTACTCACTAAACGCAGCGTCGCGAAGATTTTTGtaccttttctttttacttttcgTCTTACCCCATTCGTTTGTTCTCTTTGACGAGCGAATATCGGCCTTTTTGGTCTTCTTAGTCTCAAAAACTCACCTGCTTTAGCGAAAAGAACAGACCGTACTGGACTCCCTCACTGTTGCTGTATTTCTCAAAGTAAAAGGAAAGTGAGCGCTGAGATTACGCAGACGgggaaagtatttttttccagaaaaataAGCCATGTAACTGCGCTCGAAAGGCGTTTCTTCAGAGGACATGCATCTAAACATGAGCGAAAATAACTGTCCATTTGAAGAAAGGGATAGAGACAGACTTCCTCCTATACTAAATCATAGCTTGGATCGCGGACCGAAGCTCCCTTTTCCGTCTTATGGAAGCTTCATCTCCACCCTGAATCACAAAAGAGAGACAGGCAGCCACAGTCTTTCTTCTCCGTTCCTGCTACCTGCAGTCAAACAAGtGAGAGAGCTTCCTCCAATATGTCCAGATGTGAGACAGAAGCATCGTATCTCTATTGATGTTCTCCCTCCAGAGGTGAAGGCTCGTTTTCTCTCGGAACCCATTATTCCCATTCGGACCAAAACCGCCAAAGAGTTTCAGGATGATGTTGAAAGGGCAACTATCTCAGGGGATTGGAAACAAGTCCATGATTTCTACTTGACCACTTTTGACTCGTTTTTGGAGCTCAATGGTGCATTTAAGaaagAAGCAAATGCTCCCTTTAACACTATTGAAGACTCAGgaataaacatcaaatttgtCAGTATTGTTTATGATGCTTTACTCCACACGCCTGCGGACACGCAGAAATCAGTCCTGAAGGGAATTATTAATAGCTTATTAAGAGAATGGAAAGGgccTCGCACAAAGGATGACCTTAGAGCGTATTTTGTTCTTGTTCAGAACCCTCAGTACACCAGCCCAGCCACATATGTCATCTATGCACACTTACTGAGGCAAATTGCAGCCCTGGCTGAAGCAGACCACCATTTCCTGATGCACTGGTTTAAAAAGCTGCCTCAGAAGCGTTTCAAACAGCTGGTGGAGCGCTTGCAGCTCTTCATCACTACCCGCCTATTTCCTGCCAAGCCAGAAGAGTTGCCGCCCATGGCCAAATGCTCCTGGTGGATTCCCTCAGCCACTAAAGTCCTTTCCCTGCTTAATGCTGCAAATAGCATTTCCTCTTCCCCTATCATCCCTTTCACTGATTTCTACAACCTAACATTGGACCACATAGACTTTATGGAGGATTACCACACGTGGCAGGCTCACGGAAATTCAAACAGGTTCACCTTTTGTCAGTTCCCCTTCATCTTGTCCACAGTAGTGAAGAAGGCCATCATCCAGAGAGACTCTGAACAGCAGATGATCAGTATGGCCAGGCAAACCCTGGTGGACAAGGTTTCTCGCAGGCAGAGGGTGGATATGAGTCTGCTGTTTCTCAACATTAAAGTTAGGCGTCTGCAGCTGGTCAGTGACTCACTGGATGAGCTTTCGAGAAAGCGAGCAGACctgaagaaaaaactgaaagtgaCGTTTGTTGGGGAAGCGGGGTTGGACATGGGTGGACTCACAAAAGAGTGGTTTCTTCTCCTGATTCGACAGATTTTTCACACAGACTATGGCATGTTCACGTATGTGAAAGAGTCCCAGTGTCATTGGTTCAGCAGCTGGAAATGTGACAACTACTCTGAGTTCCGATTGGTTGGAGCCCTCATGGGCTTGGCTGTGTACAACAGCATCACACTGGACATCCGTTTCCCCCCTTGTGTCTACAAGAAGCTGCTGACTCCGCCCATTGTGCCATGTGACCTCGACACCCCTGTCGGCATGGCGACCCTCACCCTGGACGACCTCCAGCAGATTATGCCTGATCTTGCTCATGGACTCGGGGAACTCCTCAGCTATGAAGGAAACGTTGAAGAAGACTTTTATACCACGTTTCAGGTTTTTCAAGAAGAACTTGGAGTGGTCAAGTCATATAATTTGAAACCAGGAGGTGACAAGATCCCTGTAACCAACCTAAACAGAAAAGAATACGTCCAGCTCTACATTGATTTCCTGCTGAATAAATCCATCTACAGGCAGTTTGCTGCTTTCTATCATGGTTTTCATAGTGTTTGTGCCTCCAATGCCCTGATGCTTCTGAGGCCAGAGGAGGTTGAGATCCTGGTTTGTGGAAGTCCTAATCTGGACATGGGCTCTCTGCAGCGAGTAGTGCAGTATGAGGGCTACAGCAAGACTGACCCCACCATCCGAGCATTTTGGGACGTGGTGCTGGCATTTCCTTTGGAGCTGCAGAAGAAACTGCTCCACTTTACCACAGGAAGTGACCGCGTTCCTGTGGGTGGAATGGCCGACCTCAGCTTCAAAATCTCTAAGATTGAAGTCTCCACTGACTGGCTCCCAGTGTCGCATACATGCTTCAACCAGATCTGTCTACCTCCATACAAGAGCAAGAAAGAACTACGGCAAAAGTTAACCATTGCCATTTCAAATGCAGAGGGCTTCGGATTGGAGTAAATTACAGATGTAGATAATTTAATGTGTGTTCACTGAAAGAATATGGGCTGTGAtagttcatttttttaacaaccaacagggttatttttaaattctagtGCAATTGCTTAATTTGAATTTTGGTAACAAACAAGACGCAAAATTGTTATTTGAAATTGCATGCAAGGAAGTggaattaaaatcaattaaatatttaacaagcTTATTAGTACTGGacaacaattaattgcatccaaaataaaggtttttgtgcacataa

Function

symbol description
hectd2 Predicted to enable ubiquitin-protein transferase activity. Orthologous to human HECTD2 (HECT domain E3 ubiquitin protein ligase 2).

NR:

description
PREDICTED: probable E3 ubiquitin-protein ligase HECTD2

GO: NA

KEGG:

id description
K12232 HECTD2; E3 ubiquitin-protein ligase HECTD2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254313.1 True 3234 mRNA 0.44 21 7504716 7521406

Neighbor

gene id symbol gene type direction distance location
kcnj19b si:dkey-100n10.2,LOC107584158,LOC107758432,LOC107661094,LOC108424892,LOC107727700,LOC108273498 coding downstream 139701 7359383 ~ 7365015 (-)
acbd4 LOC107661095,LOC107733800,LOC107662569 coding downstream 321882 7174618 ~ 7182834 (-)
hexim1 hexim1,LOC107733802,LOC107661096,LOC107662567,LOC107561639,LOC107751667,LOC107576140 coding downstream 331348 7171396 ~ 7173368 (-)
LOC122355417 adprh,LOC108411014,LOC108274007,LOC105894051,LOC107726130,LOC106579059,LOC107571852 coding downstream 1224368 6197482 ~ 6280348 (-)
neurod2 LOC107571318,LOC107676581,LOC107732719,LOC107701796,LOC107568320 coding downstream 1482560 6017991 ~ 6022156 (-)
pcgf5b pcgf5b,LOC107584148,LOC107594155,LOC107669177,LOC107753439,LOC107758437,LOC107704022,LOC108410714 coding upstream 5670 7527076 ~ 7538565 (-)
rpp30 rpp30,LOC107669172,LOC107584236,LOC107753460,LOC107758421,LOC107683719,LOC107594207 coding upstream 30726 7552132 ~ 7554852 (-)
LOC122355224 LOC107758424,LOC107594208,LOC107669182,LOC107584235,LOC107753458,LOC100536080,LOC107683721 coding upstream 51765 7573171 ~ 7578201 (-)
LOC122355798 LOC107753456,LOC107669160,LOC107584195,LOC107594195 coding upstream 83447 7604853 ~ 7608716 (-)
ifit10 LOC107584141,LOC107753434,LOC107669232,LOC107758418,LOC107594210,LOC107683722 coding upstream 87988 7609394 ~ 7611992 (-)
G86230 NA non-coding downstream 255 7502577 ~ 7504461 (-)
G86210 LOC107758434,LOC107584156,LOC107669230,LOC107594152 non-coding downstream 17641 7480055 ~ 7487075 (-)
G86216 NA non-coding downstream 28586 7469027 ~ 7476130 (-)
G86201 NA non-coding downstream 118733 7380107 ~ 7385983 (-)
G86199 NA non-coding downstream 127521 7376898 ~ 7377195 (-)
G86232 NA non-coding upstream 1258 7522664 ~ 7523001 (-)
G86324 LOC107683711,LOC107669213,LOC107594157 non-coding upstream 66905 7588311 ~ 7590983 (-)
G86325 NA non-coding upstream 71395 7592801 ~ 7596998 (-)
G86330 ch25h,LOC107753436,LOC107584143,LOC107669234,LOC107683723,LOC107758440,LOC107594211 non-coding upstream 94462 7615868 ~ 7617213 (-)
G86334 NA non-coding upstream 109990 7631396 ~ 7634556 (-)
G86203 NA other downstream 115806 7388236 ~ 7388910 (-)
G86108 NA other downstream 400498 7103880 ~ 7104218 (-)
G86049 LOC101886504,LOC101886427 other downstream 833469 6670319 ~ 6671247 (-)
LOC122355418 pnmt,LOC107571312,LOC107676565 other downstream 1426648 6051168 ~ 6078068 (-)
G85930 LOC107711793,LOC107755027 other downstream 1492605 5990913 ~ 6012111 (-)
cpped1 cpped1,LOC107584109,LOC107669238,LOC107554009 other upstream 812998 8334404 ~ 8359992 (-)
LOC122355061 tnfrsf17,LOC107554040,LOC107692075,LOC107690067,LOC107584106,LOC107734209 other upstream 989997 8511403 ~ 8513265 (-)
G86783 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 other upstream 1089146 8610552 ~ 8612445 (-)
plbd1b LOC107578697 other upstream 1161037 8682443 ~ 8687548 (-)
trnar-ccu_66 NA other upstream 1166092 8687498 ~ 8687570 (-)

Expression


Co-expression Network