tbkbp1 (tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771)


Basic Information

Item Value
gene id tbkbp1
gene name tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 12567081 ~ 12607101 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254314.1
AAACAACCAGGAAGTAAAGCCCATCTTGAACAGGACATGAGGGGTTATGTAGTGCTGTGTCGGTGATGTTTTATATTGAATCTTCAGCAGTGGCGCTCAAACTCTCTCTGATTCCACACTGAGAGCATCTAAACCAACAACAGCAGTGGAGAGCAGCGGGCATCAGCCTCGTACAATTAACCAGCACTTCTGGGGTGCCTGGCCCTTCACCGAAGACATGTCAGCAGAGGACGGATCTATGACACACCGTTGAGGATCAGGGGTCATGGAGTCTCTCTTCGGGGGCCAGTTGGGCTTGCTGGGGGGTAATGAGGGTCTGAAAGAAGATGGTTGCGGGGTGGGATGGTCGAACTCTCCCTTATCAGAAGACATGTACTCTGCCTCCCACTTCGCCCTCATCAGCGCCTACCAGGACATTAAGACTCGCCTGGCCGGCCTTGAGCGAGAAAATGCAGACATCAAAAGAAAACTGAAGATATACGAGATAAAGttcCCCATGATAAGCGAGTTTGGAGATGACAGGAACTCCTACTGCTCCTTTGAGCCCAAAGACACGGCGCTGCTCCAGTCAGAGAATGGCAGTCTGCAACAGAGAGTCAACATGCTGACCCTCGAGCTTCAGAAGAGCAAAGAGCGAGAGGAGCAGCTTGAAGATGTCATTCAGGCCTATGAGAAAATCCACATGGAGAAGTCCAGCCTTCAGCGAGACCTCGACAAGATGACGTCTCTGGTGGAGAAACATGTTGAGCGGATCCACAGTTTAGAGGCGGCTCTGAGGCAGAGGGAGAGCTCTCTACACAAACTCAACACACAGCTCCACAATAAAGACATGCAGTATCTGCAGCTACACAGCCCTGATTCTCACATGCTAGACTGCCCCATGACCCTGCAGAGTTCACGAAGTCTGGACACCCTCTCTGACCTCAAATTGCAGCGCCTGGAGGCGGAGCTAGAGGGGGCACGGCACGAGGCTCAGGGGGCGTGTCAGAGGGAGGAGGAGCTAAAAGGAGAATGTGAGAGGTTACGGGAAGAACTAAGAGAGTTGCAAAGCACCCAGAGACAGAGGGAGGTGAGTTCCACATGTGGACAATGTGATGTGGAGTGGATAAAGAAAGTTGGAGATGAGCAAGTAAATCTGGCTTTGGCCTATACTGAACTAACAGAGGAGTTGGGCAAGCTACAGGCTCTGACCTCgaaacagactgaaatattGCGCAAAGCATCACAGGAGCCAGCAAGCCCAGttcaGCGCCACTCTCCTGTGCCTCACCAGAGGCATTCTCCTGTACCCCAGCGCCATTCCCCAATACAACAGCGCCATTCCCCAATCCAACAGCGCCATTCGCCTGTTCCCCAGCGGCGCTCTCCAGTGCTACAGCGTCTCTCTCCAGACATGCACCGTCGCTCGCCTCTGCCTGAGCTCAGCGACGGCCCCGCATCCTATTCCTGCAGGCCCACTTCCCACCACTTGAGGGCCAGTTTCCAAGGAAGACGCAGTTACTCTGAAGTAGCCGATCCGTCGGCTTATCAACGGCCCCCACGGTTCACTCTGGACCCCGTGTCCACTTTGCCGAAACCTCGACCATATGTCGACAGCTACcacaagcagcagcagcaacagcagcagcagcaacaacagcaacatGGAGGAAGCCAGCACATGTTAGTTCAAAGACAGAGCTCTCAGTCCGGGGTTGGCGATGGGGGTTTGGTTGAATCTCCACGGCTGTCCAGGGAACTGTCTTTCCACCACTCGGATGTGTCCCACTTGCATTTTGAGCCTCAGCCCAGCCCAGCACCTCTGCATTCATCCCCACAGCCTCCACAGTCCtcagaggatgaggaggagtgGTCCTGCCCTCATCCCATCAGTCCTCCCCGAACACTGGGGGTGTCGAGCCCCTCATCCAGCTCCAGAGGCCCCGCCTCTTGTTCCGCTTTCCCCATTCCTTCTCGTCCCAACACCTTAAGCTGTCACCCACCTGGATACCTGCACGCAGAGCATGCCCAGTCTTGGCCATCCATCAACCTGTGGATGGAGACCGAGGAGGAGGGTGACGTCAGGAGCTGCCCGCTGTGCCAGCTAATCTTCCCTGTTGGTTACCCTGATGATGCCTTGATCAAGCACATTGACTCGCACCTGGAGAACAGCAAGATCTGACACCCACAGCCACGCCATGACCTTCTGTTGTTCCACAGTTACATTCATTCTTTGCTCCTGGTATTTTTAGCCAGGTGCCTTCAGACAGAATGTAGGCGATGCACCTGTGGCCGGTCTCCCAATCTGATAAGTGAAAAGGAGATCTGCGATTACCTGCAAAACTCAAATGTGTCATGAACAGCTTATATCTCTATATATCGCTTCTTTTCAACACTAATTTCTTGAAAAATGttaactttctattttaaacactgtttatCAGTGGTTACACACACTAAGCCAAACCGACTGAGCATATTGCAATATTAAGGCTCTCATTTCAGATACAGTTCAACTACAGTTCCCatgattatttgcattatttacacttttatgtGGCCGCAGAATGTGCTTTGTGGCCATTTTTAGAGAACTGAGTAGTTATGAGTGTGCTATACAGGAAGAGCGTGAGGGAATATTAGACATAATGGCCAATGGTCACTTCATTTGAATTTCAGCACTTTATATAAGCACTTAATATCCAGTTTACCTTTATCAATATTACTAACACTGAGGCAAAAAAGTAAAACCTTAtagatataatttattttttaatactcaAGGGACTTGAATACCCTAAAATATATCTTAGTTTGGCAGGACTTCCCTTTAACAAAACTGAATTCTTTGTAATTATCTGTAAATTCACAATCGCATCTATTTTGTTTGTCTTCCGGGGTGTTTGGCTGTACAAAAAGGgaagatttgtttcttataagtATTCTTAAAGAATTTCCtcttataaaatacaaaagacaCATTTTAGCCAACCACTGACAAAACATCAGTTACTGTTGTTTCTCAAGACAGTAATACTGTGATTTCCATAGTACACCTAGACAGTGGGTTGTTTTTGATGTAATTACTTAAGAAAAATTgctttaacaaaatatatttgttcagCTGATTACATCACAGAGCGCAATCTGTTTTATCAGTTCAAacttttttaatgtactgtaaatgtataCTTGTATTTAAAGCCAATATATGTATTAACCTATATAATAtagatatgcatttttttccaagcTTGGATGAAAGCAAATGGATTGCTGaagattaaaagaaaactaGTGGAACTGCTAAATCAAGTTTTCTATTGCTGTGATCCAAAGGACGCAGCACCCATTTGAGTGTGTTTAATTACCTTACTATTCCTTATTCTTCCAGGCGTACCTTATGCTATGTTATAAAACTTCTCGCTACTTTCCCTGATTCTGCAGACTTTGTAAAAACAAGGGCACTGGATCTGCTACTAACCCAAATACAGAGGAACTAAAATGGGAAAGTAGCACAAAGAAGTCATTGCTGGTGCACATGTGCGAAATTACGAAGCCAAATATAgcaaagtgcaaaataaaaagctcTACGCTGTCTGTCAGATAACTGGATGGAGGTTTCATTCAATTGGTCGTCTAATTGCTAATATTCTAGAAAGTACCATCCCAGTTGgtcatgtaaatatatgaatcGTCTATTATGTCACCATccaatatatattgaaatacaaGTGTGGATAAACTAAATTGTCATCAATACAACCAAAGACACAGCctgcttgtttttcatttcttttcacatGATGACCAAGTACCGGTTAAGAATATTACTCTGAAATATGGTGGGAGAACATTTTAACGAATAGTTTGCAGACGTGGAAAGATGCAGCTGAAGTGTAAAGACAGTCCATTTCTGCATACTCACCCACAATTATCCatatccaaatatatatatatatataatatatatatatatatatatatatatatatatatatatatatatatattatatcttgtCTTGCACCCTTGTTCACAAACAGGCAGAGTAAAAGCAAAGTATAACTTCAGCCACTATTCACAAAGATTCACTCAGGAGTTATTTAAAGAGCTACTGCTGTTACCTTGCTCCTCGagacagtgtttttttctcaCGCAAAGGCAAATTAGCAAACTGAATGCTTTTCTGGATGCTCAAAGTATATGGTCTCTCTGTTGCCCTGTAGTTTGGTGTGTGATTTCTTTGTGATATTCTTAAATAACTCAGGGGATAAAGCTTTGTGAATATGGCTCCTTGAACATACACAACTAACCTCCACTGGGACAATGTGAGAACTCACCAAATCTATTGAAGAGCCAAGAGGATGCTAACGGGGTAGATTTATTTTGTCATACCAACAAggtatactttaaaaaaaaaagaaaaaagacatttaaaatgaatgcatattgtgtcaaaaatattctgtaaatattattaaataaactggAACATGCACTca

Function

symbol description
tbkbp1 Predicted to enable metal ion binding activity. Predicted to be involved in I-kappaB kinase/NF-kappaB signaling. Predicted to be active in cytoplasm. Orthologous to human TBKBP1 (TBK1 binding protein 1).

NR:

description
PREDICTED: TANK-binding kinase 1-binding protein 1

GO: NA

KEGG:

id description
K12652 TBKBP1; TANK-binding kinase 1-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254314.1 True 4484 mRNA 0.44 10 12567081 12607101

Neighbor

gene id symbol gene type direction distance location
cdk5r1b cdk5r1b,cdk5r1,LOC107568950,LOC107565647,LOC107754098,LOC107675021,LOC107691215,LOC108426451 coding upstream 79898 12482052 ~ 12487183 (+)
LOC122355615 LOC107754112,LOC107689267,LOC107743783,LOC107566616,LOC107691214,LOC107568947 coding upstream 109226 12451994 ~ 12457855 (+)
LOC122355068 uts2r,LOC107552777,LOC107754100,LOC107689263,LOC107577513,LOC107743796,LOC107691210 coding upstream 164220 12372428 ~ 12402861 (+)
cacna1g cacna1g,LOC107754113,LOC107552774 coding upstream 214597 12165589 ~ 12352484 (+)
spata20 spata20 coding upstream 419214 12113257 ~ 12147867 (+)
tbx21 tbx21,LOC107565723,LOC107563776,LOC107677868 coding downstream 31038 12638139 ~ 12653725 (+)
pnpo pnpo,LOC107743793,LOC107754092,LOC107563779,LOC107677888,LOC107565739 coding downstream 61121 12668222 ~ 12671939 (+)
cdk5rap3 cdk5rap3,LOC107754106 coding downstream 70599 12677700 ~ 12683617 (+)
nfe2l1b nfe2l1,nfe2l1b,LOC107565927,LOC107754105,LOC107743763,LOC107563780,LOC107677875 coding downstream 84417 12691518 ~ 12697239 (+)
phkg2 phkg2,LOC107743765,LOC107675026,LOC107563781,LOC107566018 coding downstream 102310 12709411 ~ 12714672 (+)
G87753 NA non-coding upstream 8349 12556682 ~ 12558732 (+)
G87718 NA non-coding upstream 89172 12476805 ~ 12477909 (+)
G87669 NA non-coding upstream 326880 12239783 ~ 12240201 (+)
G87665 NA non-coding upstream 408573 12158246 ~ 12158508 (+)
G87664 NA non-coding upstream 409266 12157586 ~ 12157815 (+)
G87891 NA non-coding downstream 292971 12900072 ~ 12900399 (+)
G87934 NA non-coding downstream 588883 13195984 ~ 13197074 (+)
G87979 LOC107755539,LOC107566694,LOC107702418,LOC107708141,LOC107689963 non-coding downstream 741848 13348949 ~ 13383848 (+)
G87981 NA non-coding downstream 753213 13360314 ~ 13361050 (+)
G88010 NA non-coding downstream 822312 13429413 ~ 13431559 (+)
nbr1a nbr1,LOC107669491,LOC107706899,LOC107582742,LOC107727312,LOC107666919 other upstream 621446 11936841 ~ 11945635 (+)
hoxb6b hoxb6b,LOC107669478,LOC107706870,LOC107582852,LOC107552740,LOC107666911,LOC107727299 other upstream 682984 11882151 ~ 11884097 (+)
G87315 zeb1b,LOC107666916,LOC107706887,LOC107727309,LOC107582755,LOC107552760,LOC107669492 other upstream 865426 11694844 ~ 11701655 (+)
svila LOC107686370,LOC107657481,LOC107584371,LOC107749370,LOC107549408 other upstream 1984536 10523143 ~ 10582545 (+)
LOC122355633 rhoq other upstream 2067383 10497425 ~ 10499698 (+)
G87817 NA other downstream 125663 12732764 ~ 12737649 (+)
gall si:rp71-1c10.8,LOC107677873,LOC107743798,LOC107675007,LOC107566084,LOC107754084,LOC107563807 other downstream 153273 12760374 ~ 12762731 (+)
G88016 NA other downstream 834842 13441943 ~ 13444915 (+)
G88082 NA other downstream 988693 13595794 ~ 13596348 (+)
gucy2g gucy2g,LOC107702423,LOC107755438,LOC107722192,LOC107581632,LOC107684125,LOC107571103,LOC108273537 other downstream 1248594 13855695 ~ 13864743 (+)

Expression


Co-expression Network