rbp4 (rbp4,LOC107743953,LOC107664626,LOC107598599,LOC107557363,LOC107653948)


Basic Information

Item Value
gene id rbp4
gene name rbp4,LOC107743953,LOC107664626,LOC107598599,LOC107557363,LOC107653948
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 623911 ~ 626522 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254316.1
CAGCTGTTATGTAAAAAGTTTTGTCCAATGACAGGGATGGAGGAGACCGAATATTGGGTGGTATTATGAAATACCCCCAGAGGCCCATCCCTATATAAAAGCGCCTCGCACGAATCCAGCTGCAGCACTACAGATACACTTTCAGATACTGTGATCGAGCTCAAGCACAGAAGCAGCATGCTCAGGCTTTGTATAGCTCTCTGTGTCCTGGCGACATGCTGGGCACAGGACTGCATGGTGAGCAACATGACCGTCAAACAGGACTTTGACAGAATGAGGTATCAAGGAACATGGTACGCCGTAGCCAAGAAAGACCCCGTTGGGCTTTTCCTTCTTGATAATATTGTCGCCAATTTCAAAGTGGAGGAGGATGGAACCATGACAGCTACAGCCATCGGCAGAGTCATCATTCTCAACAATTGGGAGATGTGCGCCAACATGTTTGGCACTTTTGAAGACACCGAAGACCCAGCTAAATTCAAGATGAAATACTGGGGAGCCGCAGCTTATCTCCAGACAGGATATGATGACCACTGGATCATTGACACCGACTATGATAACTACGCCATCCACTACTCCTGCAGAGAGCTTGATGTGGATGGAACCTGCTTGGACGGTTATTCCTTCATCTTCTCCCGATATCCCGATGGCCTCAGACCTGAAGACCAGAAGAATGTGACAGAGAAGAAACAGGATATCTGCTTCCTGGGCAAATACAGACGCGTTGCACACACAGGTTTCTGTGACACTGCCTAAACGACCGCCACACTGAGGACGTAatctgacatttttatatttctaacaGATATGTAAATATGGGCAATAAGCTCAATAAAAGAGAATGAGCAataattttgcacaaaaagcAAAAGGTTTAATAACAGTAAGTTGCAGGAtgtaactatttttttcttctatttttttttttttttcaaataaacttgaaaagAAAGTATATTTACTGAACTCAGTGCTTGATGCTGGTAAACTCAAGTCTTCAAATGTCATCTGAGGTTTCTCCTGCGCGCTACCAATACAAACAGCACCGTGGTAAATCAATGCTGTCTGTTGACAGACCCGCTAACAAAAATCTTGTGCAACATGGATCATGATACAGAGTGACTGGTGTCAGCGCACAGATCATACACCAGCGTCCAGCCTTTCAGGGACAGCAACTGTTACATGAAAACCGTTGCATTTTCTTTGAGTTGCAATTCATAATGTGTGCATGCACATGGGCCAAAGTTGTTGGAGAATGAAATGTTGCATTgccattcagtgtaacacaatgtAAAAATCCGTTGTacgtattaaaaatatataaaggaaCAAGGAAGCATGttaaattttattgtgtttgaaaagAGTAAAAACATCTTACTGGCAAATGGGTGAAAACTAGGGTAGtggcataataataaatgtcaaatgaattagtatttggggtgaaagtaattcATCTTGACCACAAGATTGCGACACTGAATGACATCTTAGTGggtaaatcttttatttttgcctcagaaaaactaaaaattgctattaatgtttttttggtggTGGTGGGGGTAAGGTactacacttatttttttagttaaaccctttttttgtctttcaccCTTAAGCATTTACGCAGTCttctaaatacaatatttataaactTCTATTGATGCACATTCTGTTTAGAAATGTCATGGAAAAGGCTATTAATTtcatatattgcatttaatatgtctatggagaaattttgcattgagatttatatcactttaaaataaaactattatacaAATGTT

Function

symbol description
rbp4 Predicted to enable retinol binding activity. Acts upstream of or within liver development and response to retinoic acid. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including apical ectodermal ridge; digestive system; integument; reproductive system; and yolk. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human RBP4 (retinol binding protein 4).

NR:

description
retinol-binding protein 4 precursor

GO:

id name namespace
GO:0001889 liver development biological_process
GO:0006810 transport biological_process
GO:0032526 response to retinoic acid biological_process
GO:0005576 extracellular region cellular_component
GO:0005501 retinoid binding molecular_function
GO:0036094 small molecule binding molecular_function
GO:0005215 transporter activity molecular_function

KEGG:

id description
K18271 RBP4; retinol-binding protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254316.1 True 1796 mRNA 0.40 6 623911 626522

Neighbor

gene id symbol gene type direction distance location
LOC122355758 NA coding downstream 146372 469843 ~ 477539 (-)
LOC122355175 NA coding downstream 179086 439870 ~ 444825 (-)
mapta LOC107598589,LOC107732173,LOC107654024,LOC107664605 coding downstream 189635 407356 ~ 434276 (-)
brsk1a si:ch211-255p10.4,LOC107598587,LOC107732176,LOC108441159,LOC108273514,LOC107654020,LOC107557374,LOC103033508,LOC108427376,LOC107658484,LOC107548343 coding downstream 242744 363606 ~ 381167 (-)
irf3 NA coding downstream 284918 333577 ~ 338993 (-)
fra10ac1 fra10ac1,LOC107664625,LOC107654038,LOC107708941,LOC107557362,LOC107743956 coding upstream 14349 640871 ~ 650188 (-)
noc3l noc3l,LOC107664623,LOC107654039,LOC107743960 coding upstream 110126 736648 ~ 745103 (-)
tbc1d12b LOC107743959,LOC107654040,LOC107708937,LOC107664632 coding upstream 119745 746267 ~ 762604 (-)
LOC122355750 LOC107654041 coding upstream 151979 778501 ~ 797724 (-)
abi3b abi3b,LOC107654042,LOC107598650,LOC107743966,LOC107664617,LOC107708878 coding upstream 172299 798821 ~ 802802 (-)
G84654 NA non-coding downstream 12064 610067 ~ 611847 (-)
G84547 NA non-coding downstream 145480 478023 ~ 478431 (-)
LOC122355423 NA non-coding downstream 237454 385889 ~ 386457 (-)
LOC122355197 NA non-coding downstream 238889 382572 ~ 385022 (-)
LOC122355220 LOC107561990,LOC107660458 non-coding downstream 425044 197400 ~ 198867 (-)
G84666 slc35g1,si:ch211-197g18.2,LOC107598601,LOC107654036,LOC107664634,LOC107664593,LOC107557359,LOC107708939 non-coding upstream 33567 660089 ~ 663746 (-)
G84700 NA non-coding upstream 133403 759925 ~ 789003 (-)
LOC122355303 NA non-coding upstream 140132 766654 ~ 769898 (-)
LOC122355070 NA non-coding upstream 320505 947027 ~ 979785 (-)
G84793 prkg1,prkg1b,LOC107695529,LOC107654050 non-coding upstream 438411 1064933 ~ 1065345 (-)
ifnphi4 LOC107653919,LOC107732171,LOC107598640,LOC107664622,LOC107708945,LOC107557348 other downstream 71468 543246 ~ 552443 (-)
zgc:163073 LOC107653918,LOC107732170,LOC107708955,LOC107557349,LOC107664608,LOC107598675 other downstream 123692 496964 ~ 500219 (-)
LOC122355759 NA other downstream 133532 484438 ~ 490379 (-)
prr12a prr12a,LOC107708947,LOC107664611,LOC107598586,LOC107654018,LOC107732166 other downstream 263429 340273 ~ 360482 (-)
G84521 NA other downstream 302651 319330 ~ 321260 (-)
dlx4b dlx4b,LOC107739765,LOC107557342,LOC107708902 other upstream 263188 889710 ~ 897517 (-)
ank3b ank3b,LOC107654059,LOC107695539 other upstream 1187561 1814083 ~ 1947412 (-)
jmjd1cb jmjd1c,LOC107745648,LOC107654065,LOC107695544 other upstream 1547466 2173988 ~ 2285052 (-)
G85232 LOC107663296,LOC107583514,LOC107733536 other upstream 2141386 2767908 ~ 2781353 (-)
LOC122355711 rara,LOC107700643,LOC107717720,LOC107565243,LOC107563215,LOC107719850,LOC108434941,LOC108261354,LOC107554136,LOC107737746,LOC108276117 other upstream 2463107 3089629 ~ 3103315 (-)

Expression


Co-expression Network