crym (crym,LOC107745653,LOC107569187,LOC107753321,LOC107684776)


Basic Information

Item Value
gene id crym
gene name crym,LOC107745653,LOC107569187,LOC107753321,LOC107684776
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 2470023 ~ 2473570 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254337.1
GTCCACAATAAACAGAGAAGTCTTTGAAAATAGCAAGACCGAAAGACAGGTGAAAAAAAACCATGAGCGAGTCTCCCGTTTTATTGAGCAAACGCGAGGTCGAGCGCGTGCTCGGTTATGATGATCTGATTCCCAGACTGGAGTCTGTCATGGGAAAGTTTTCTAAACGGAGCAGTTCAGAAATAATCCAGCCTGTGAGATCTGTGGTCCCTATACAGCAACACAACGGGTTTTTGGGCGTTATGCCTGCATATTTGGCCGCTGAGGGTATTTTATGCACTAAGATGGTGACCTTCTACCAGCGTCCAGAGGGGTCCGGTTTACCGTCAACTCAAGCAACTGTGTTACTGTTTCATCCCGAGCATGGAAATGTGACTGCGATCATGGATGGGGAGGCCATCACAGCCAAACGAACCGCAGCCGTATCAGCCATATCAGCTAAACTTTTCAAGCCAGCTCTTTCAGAAGTGCTGTGCATCCTCGGTTCAGGGCAGCAGGCTAGAAGCCACTATGACGTTTTCACAAAACTCTTCGAGTTCAAAGAGGTCCGCGTGTGGAGCAGAAGGAAAGAAATGGCTCAACGGTTCGTTAATGATCTCCAAGGTCCTGTAACAGTCTGTTCTTCGGTGAAGGAGGCCGTGATGGGGGCTGATGTAATAGTTACCGCCACAGGTGCAAGTGAGCCGATTCTCTTCGGGGAGTGGGTCAAACCAGGTGCACACATAGCAGCGGTTGGCGCTTGTCGGCCAGACTGGAGGGAACTGGATGACATATTGATGAGAGAGGCTGTAGTGTACGTGGACAGCAGAGAGGGGGCGACGGCAGAGTCAGGAGACATCATTCTGTCTGGAGCTGAAGTATTCGGAGAGCTCGGAGAAGTTATAAATGGATCCGTTCCTGCTCTGCGTGAGAAGACTACGGTATTCAAGTCACTGGgaaTGGGGATACAAGACGCTGTCTCAGCCAAACTTGTACTGGAGAAGTGGAACAGCGAACACTGAAGAACCATCCAGCTCAGCTTCCTCCGCTGATTTCACAATCGTCTTGTCTGCCACGGTGGTATCTTTATCCTGATCACTCTTTATACAGTATAATCACTAAAGTActtttagtataaaaaaaataaataaaaagcaacagTACTTTTTTCACGTATTGTAGCATCATTAATAGATTGCTACAGagattataatgtatttttgttggcTAACACCTAGAAATGTGTTAGCAGTTTAACTCTTTGGTTCTGTTGCCCCAAAGCTGACAGGTTTATTTTAACTggatttttgttaaatgcctaaaataaagtgtgcagttaatattaagttaatgttttattctacaacaaaaaaaaatacattagtaCAATACATACCCTTTTGTAATTGCCTTGAAAAAAAGGGTTTGCTAATAACTAATTTTCAGCAATAATCCAAAAGGCAATAGAAAAACCCTTCCGGATTATGGTTGGTCTACCAAAACACATCACTGCAGCACTTTATGCTGTACTACAAAACATTTTGGGACACCCCcttatttagaaaagaaaagggCACTTCAAAACTGTGGCAACAAAGATGGAAgcataatttatacatttaaaaagtttttatcaaCATCTATATTGCAACGGCTTACAAGTTGGTGTTTATTGATCGCTTTCTGGTTCAAGGTCTGATTTAAAGGCATACCAGAGGTGTTTATGACTTTACGGAGAATAGCCAAGTTCTTCCATGCGCACCGAATCaatcatgtctttttttaaccttgccttatGCACAGAGGCATTGCCGtgatagaatagaaaagggtcttgtccaaactgttgctataaaattagcAGCACACAATTTCCTAGAATACCACTGAATGCTTAAACATTAAGATATGCGCTCATGGAAATATGTCAAGTagggtgccaatacttttgttCATAAAGTGTACGTGGAAAACAAAggacaaagaaaaatgtgtttatatttggtTTCTATTTTCAGACATAAAGGTTAATGCACTGTAGCTTTAGTGGAGACAAAAGCATGAATAAAGCGTTTTAAAAAGTTACAGATCTgtcaaaattaaacattccATGTGGCAAATTCCAA

Function

symbol description
crym Predicted to enable thyroid hormone binding activity. Predicted to be involved in thyroid hormone metabolic process. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 40. Orthologous to human CRYM (crystallin mu).

NR:

description
ketimine reductase mu-crystallin

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008473 ornithine cyclodeaminase activity molecular_function

KEGG:

id description
K18258 CRYM; thiomorpholine-carboxylate dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254337.1 True 2105 mRNA 0.42 8 2470023 2473570

Neighbor

gene id symbol gene type direction distance location
LOC122355817 LOC107695513,LOC107739060,LOC107653963,LOC107745680,LOC107593524,LOC101884976,LOC107579057 coding downstream 67338 2398531 ~ 2402685 (-)
adam8b LOC107654071,LOC107745666,LOC107739052,LOC107695548,LOC107596597,LOC107593516 coding downstream 77123 2381934 ~ 2392900 (-)
exoc6 exoc6,LOC107654070,LOC107695547 coding downstream 89614 2338676 ~ 2380409 (-)
LOC122355364 cyp26a1,LOC107653962,LOC107593523,LOC107745679,LOC107596578,LOC107695519,LOC107739064 coding downstream 134419 2331293 ~ 2335604 (-)
egr2b egr2b,LOC107739063,LOC107653961,LOC107745678,LOC107596614,LOC107593522,LOC107596611 coding downstream 326246 2141370 ~ 2143777 (-)
snu13b snu13b,nh2l1,snu13,LOC105898651,LOC105031476,LOC106589607,LOC105910236 coding upstream 1426 2474996 ~ 2476396 (-)
trnal-uag_3 NA coding upstream 20140 2493710 ~ 2493791 (-)
psmc5 psmc5,LOC107745657,LOC107753303,LOC107684752 coding upstream 107488 2581058 ~ 2585819 (-)
smarcd2 smarcd2,LOC107684754,LOC107569192,LOC107560559,LOC107694073,LOC107753305 coding upstream 114174 2587744 ~ 2596891 (-)
atxn7l3b si:dkeyp-118b1.2,LOC107694074,LOC107745658,LOC107684755,LOC105909120 coding upstream 124326 2597896 ~ 2603692 (-)
G85119 NA non-coding downstream 158552 2311243 ~ 2311471 (-)
G85116 NA non-coding downstream 160990 2306892 ~ 2309033 (-)
G84956 NA non-coding downstream 468387 2001334 ~ 2001636 (-)
G84928 rhobtb1,LOC107654062,LOC107727061,LOC107745661,LOC107695540 non-coding downstream 500973 1964986 ~ 1969050 (-)
G84919 NA non-coding downstream 715452 1751402 ~ 1754571 (-)
G85173 NA non-coding upstream 8677 2482247 ~ 2483927 (-)
G85174 NA non-coding upstream 11624 2485194 ~ 2486204 (-)
G85177 NA non-coding upstream 32608 2506178 ~ 2507961 (-)
G85165 LOC107745672,LOC106958681,LOC103481982 non-coding upstream 99741 2573311 ~ 2576906 (-)
G85214 NA non-coding upstream 205152 2678722 ~ 2679291 (-)
jmjd1cb jmjd1c,LOC107745648,LOC107654065,LOC107695544 other downstream 184971 2173988 ~ 2285052 (-)
ank3b ank3b,LOC107654059,LOC107695539 other downstream 522611 1814083 ~ 1947412 (-)
dlx4b dlx4b,LOC107739765,LOC107557342,LOC107708902 other downstream 1572506 889710 ~ 897517 (-)
ifnphi4 LOC107653919,LOC107732171,LOC107598640,LOC107664622,LOC107708945,LOC107557348 other downstream 1917580 543246 ~ 552443 (-)
zgc:163073 LOC107653918,LOC107732170,LOC107708955,LOC107557349,LOC107664608,LOC107598675 other downstream 1969804 496964 ~ 500219 (-)
G85232 LOC107663296,LOC107583514,LOC107733536 other upstream 294338 2767908 ~ 2781353 (-)
LOC122355711 rara,LOC107700643,LOC107717720,LOC107565243,LOC107563215,LOC107719850,LOC108434941,LOC108261354,LOC107554136,LOC107737746,LOC108276117 other upstream 616059 3089629 ~ 3103315 (-)
G85366 NA other upstream 784961 3258531 ~ 3299688 (-)
kcnh6b LOC107684759,LOC107753307,LOC107573422 other upstream 1743834 4217404 ~ 4230039 (-)
LOC122355775 NA other upstream 1824297 4297867 ~ 4305215 (-)

Expression


Co-expression Network