LOC122355797 (ccdc6a,LOC107717103,LOC107663299,LOC107671115,LOC107733539,LOC108431652,LOC105910584,LOC105010545)


Basic Information

Item Value
gene id LOC122355797
gene name ccdc6a,LOC107717103,LOC107663299,LOC107671115,LOC107733539,LOC108431652,LOC105910584,LOC105010545
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 2786843 ~ 2797453 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254350.1
CCCCGTTTGCCTGCACTTTCAGCACGCCCAGTCATTTCTTGGACCGTTCCCTCTCCAGTCTAGCCACAGTTGCTCCATCCCATTTTCTCCCTAGCCCCTGAAATCCACGTCCACTCCACTCGAGGACCGTCGCGAGCACCAGGTATCGAGCGCGAGACACCATGGCGGACAGCGCGAGCGAGAGCGACACGGACGGCGCGGGCAGCAGCAGTAGCTCCGCCACCCCGCAGTCCTCCTGCACCTCGGCGGCCGCCTCCAACACCACCACGACCACAACGAGCGCCGCCACCAAAGCCCAGGGCGTCGTGATCTCGCAGTCCCGTTTGGAGGAGCTGACAAACCGGCTCGCTTCGCTGCAGCAGGAGAACAAAGTGCTGAAGATCGAGCTGGAGACGTTCAAGCTGAAGTGCAAAGCGCTGCAGGAGGAGAACCGCGACCTGCGCAAAGCTAGCGTCACCATCCAAGCGCGTGCAGAACAAGAAGAGGAGTTTATCTCCAATACTTTATTTAAGAAGATTCAGGCACTGCAAAAGGAGAAAGAGACACTTGCCGTCAACTATGAGAAAGAAGAGGAGTTCCTTACCAATGACTTGTCCAGGAAGCTCATGCAGCTTCAGCATGAAAAGGCAGAGCTGGAGCAGCATTTGGAGCAAGAGCAGGAATTCCAGGTCAataaactgatgaagaagatCAAAAAACTGGAGAACGACACCATCTCCAAACAGCTCACTCTGGAGCAGCTCCGACGTGAGAAGATTGATCTGGAAAACACTCTGGAACAAGAGCAGGAGGCACTAGTGAACCGGCTTTGGAAGCGCATGGACAAACTCGAGGCAGAAAAAAGGATTCTGCAGGAGAAGCTTGACCAGCCAGTGTCAGCCCCGCCCTCTCCACGTGAAGTTTCCATGGAGATTGACTCTCCGGAGAATATGATGCGGCACATCCGCTTCCTCAAGAGTGAAGTGGAGAGGCTCAAACGCAGCCTCCGCACTACAGAGCTCCAGCACACAGAGAAGCGGGCTCAATATATTGAGGAGGAAAGGCAAATGAGGGAAGAGAACATTCGTCTTCAGAGAAAACTtcagagagaaatggagagaagGGAGGCACTGTGTAGACAGCTGTCAGAGAGTGAGAGCAGCCTTGAGATGGATGATGAGAGATATTTTAATGAGATGTCTGCTCAGGGACTGAGAGCTCGTACGGTGTCCAGTCCAATCCCCTACACCCCCTCTCCTTCCTCCAGCCGCCCCATCTCCCCTGGTTTGTCGTACGCTAGTCACACGGTTGGTTTCACCCCTCCAGCCACACTGAGCCGAGCACCACTCCCCCACTACACATCTCCCGGGCTACACATCCACCCAGGACCCTCACATGCTGTACAGAGGCCATCCCCAAGGAGAAGCACCAGCCCAGATAAGTTTAAGCGTCCGACGCCTCCTCCctccccaaacacacactctggaGCACAGCACcctcctccaccaccaccacccgCACAGCCGATGATGCAGTCTGGCTCCTCCCACTCTGTGACGTCACAGAACCCCCCCTCTCAGCCTTAATGCATGCACCATGCGCTACCTTAAGCTAGGCTGCTCCAAGCTAGGctacactactactactacaatgACAACAACTCAGTGATCCTCCACTGGGCAAAGGTTGGAAGGGAATGGAGCGGATATGGAATTAGAGGACCGTTGAACTGGGGAGTGAAAGGACTGGGAATGTCAAAAGGGAGAAGGTGTAGATGCTTGGCCAACTGACAGATCCATAACCAGCCCCATGCCGTTAAATTTCGTTattcttactttttattttcttgtaaagtGATCAAGCTGGTTCAGGGAAAGATAGGAAGATTGCTCAAGAGGGCTGTCAGCTGCGTatgcctgcttttttttttcttttttcttttttttcttcttttgtgggaagattttttttccctgcccccatttaaacttattttttttaacagattgactgttaaatgtaattgaaattttccatttaataaacAACTCAATTGGATAAATCTTTGAATGCATCTTCACAGAAGTCGAAAAGAAATCCCAGCACATTTGCCGTGGGGGCGGCagtaaaaccttttttctttttattgtctgtctgtttgttttagaccgtttttgtttgtgaaacagatgtgtgtgtgtgcgcgtgtggcTCGTTGGCAGCATGTAGATGGTAAAGAAGACAGACTGAAATGTACTGAAACAGCACTTGTTGCCTCTCTGCGTGTGTATTATAGTGGGAttatagtgtttgtgtgtgcgggtgtttgtgtgtgtctgcacaGCCATAGAGGTTTCTCAAGACTGCTGGTCGGAGACCAGTCTCTCCCTCCTAGAATCCAAACATGAcccactacaaaaaaaacaaaacaaagtcagTACTGGTTTCTGATCAGCAGCTCAACCTCTCTCAGAGCTCCCGCTGTAAAGTGAGTGCTCTGAACGCTTATACAGATGGGGAATTTTGCTTAATGCCAGTGTCATATAACACCTAAACATGAACAGACATGTTGATGCGACAAAACAAGGTACCGTTGAACAATTAACTCAACATGATTAAATGCTTGTA

Function

symbol description
ccdc6a Is expressed in female organism. Orthologous to human CCDC6 (coiled-coil domain containing 6).

NR:

description
PREDICTED: coiled-coil domain-containing protein 6-like isoform X1

GO: NA

KEGG:

id description
K09288 CCDC6, PTC; coiled-coil domain-containing protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254350.1 True 2607 mRNA 0.50 9 2786843 2797453

Neighbor

gene id symbol gene type direction distance location
ngfrb ngfrb,LOC107745659,LOC107684756,LOC107569198,LOC107560558,LOC107694076,LOC107753306 coding upstream 136558 2621204 ~ 2650285 (+)
mpp2b mpp2b,LOC107684751,LOC107569196,LOC107694069,LOC107753302 coding upstream 209941 2545758 ~ 2576902 (+)
pyyb pyyb,LOC107695522,LOC107745683,LOC107569181,LOC107753323,LOC107684781,LOC107560546 coding upstream 241724 2542386 ~ 2545119 (+)
tut1 LOC107684771,LOC107695563,LOC107560560,LOC107753301 coding upstream 254025 2528102 ~ 2532818 (+)
ndc80 ndc80,LOC107684779,LOC107569179,LOC107560547,LOC107695521,LOC107753322,LOC107745668 coding upstream 259695 2520345 ~ 2527148 (+)
atoh1c LOC107598046,LOC107745660,LOC107660485,LOC107678425,LOC107716449,LOC107571691 coding downstream 698836 3496289 ~ 3497041 (+)
LOC122355621 htra1,htra1b,LOC107660481,LOC107745581,LOC107598034,LOC106578991 coding downstream 793139 3590592 ~ 3616744 (+)
LOC122355747 htra1,htra1b,LOC107660481,LOC107745581,LOC107598034,LOC106578991 coding downstream 895658 3693111 ~ 3720271 (+)
zgc:174164 LOC107678320,LOC107745598,LOC107571735 coding downstream 934051 3731504 ~ 3742885 (+)
get4 get4,LOC107716485,LOC107598031,LOC107660479,LOC107678333,LOC107571739 coding downstream 945823 3743276 ~ 3753428 (+)
G85215 NA non-coding upstream 106526 2680044 ~ 2680317 (+)
G85213 NA non-coding upstream 107549 2678714 ~ 2679294 (+)
G85097 NA non-coding upstream 180626 2605096 ~ 2606217 (+)
G85074 psmc5,LOC107684752,LOC103381410,LOC107753303 non-coding upstream 203515 2582799 ~ 2583328 (+)
G85051 NA non-coding upstream 401061 2385239 ~ 2385782 (+)
G85248 LOC107581964,LOC107732308,LOC107692781,LOC107697371,LOC107587198,LOC107707128 non-coding downstream 71710 2869163 ~ 2871748 (+)
G85332 NA non-coding downstream 963849 3761302 ~ 3788868 (+)
G85444 NA non-coding downstream 1195333 3992786 ~ 3999479 (+)
G85477 NA non-coding downstream 1431302 4228755 ~ 4229534 (+)
G85550 NA non-coding downstream 1514014 4311467 ~ 4311944 (+)
LOC122355862 ank3a,LOC107663296,LOC107733536,LOC107717054,LOC107654059,LOC107727055,LOC107746453,LOC107695539 other upstream 2873 2715640 ~ 2783970 (+)
G84866 ank3,LOC107746453,LOC107654059 other upstream 954852 1820519 ~ 1831991 (+)
bicc1b bicc1,LOC107653928,LOC107596591 other upstream 1057413 1659828 ~ 1729430 (+)
si:ch211-131k2.2 NA other upstream 1803053 981423 ~ 983790 (+)
G84731 dlx4b,LOC107739765,LOC107708902,LOC107664616 other upstream 1889308 891599 ~ 897535 (+)
LOC122355426 rhobtb1,LOC107654062,LOC107727061,LOC107695540,LOC107552568,LOC107746840,LOC107718339,LOC107680668,LOC107676653 other downstream 4159 2801612 ~ 2820613 (+)
LOC122355768 waplb,wapl,LOC107598042,LOC107660482,LOC107716480,LOC107745560,LOC107678383,LOC107571690,LOC105006405 other downstream 376736 3174189 ~ 3211352 (+)
btbd16 btbd16,LOC107660483,LOC107716451,LOC107598041 other downstream 457265 3254718 ~ 3267839 (+)
ndufa4b ndufa4,ndua4,LOC107745684,LOC107569184,LOC107684782,LOC103023526,LOC108443163 other downstream 1477887 4275340 ~ 4277385 (+)
LOC122355090 ebf4,ebf3,LOC107750882,LOC107668586,LOC107671096 other downstream 1602143 4399596 ~ 4408405 (+)

Expression


Co-expression Network