LOC122355801 (LOC107584107,LOC107734172,LOC107690070,LOC107731391,LOC107554041)


Basic Information

Item Value
gene id LOC122355801
gene name LOC107584107,LOC107734172,LOC107690070,LOC107731391,LOC107554041
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8514713 ~ 8515183 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254353.1
ATGGAGATAAAGCATCCAGGAGTTGGTCGTTGTAAATGTGCGTTTTGGTTTGCTGTTTTTCATGAcatttttggactttttgtcCTCCTGGTTGGTGTGTTTTGGGACATCTTTTTCCATGACTTTTTAATTTACGCCGGGGCTGTGATTATTTTCCTGAGTCTGATCTGGTGGGTGTTTTGGTACGCTGGTAACATTGAAGTGCCTCCTGAAGAGCTGGAGGACGACATTGCTCAATACAAACGCGCTAAAGGAATTTCAGGCGTTATGCGTAAAGTCTCCAGCAGTCTTTCCAATGGATTGAGGAATTCCTTCAGGAGAAGTGGAAGAATCAACGCTCAGGCTGAAGGCTCTCAGCCAAACAGCACGGCCAGGGCAGATCGACCTGTTGCTATTGCCATGAGCTCCTATCTGAATACACCACCTCCTGGAACGACCAACCATCTGAACCGAGATCCTTTAGTGATATAA

Function

NR:

description
PREDICTED: transmembrane protein 238-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254353.1 True 471 mRNA 0.46 1 8514713 8515183

Neighbor

gene id symbol gene type direction distance location
snx29 snx29,LOC107584181,LOC107734208,LOC107690065 coding downstream 3499 8417232 ~ 8511214 (-)
ercc4 ercc4,LOC107734247,LOC107669240,LOC107692079 coding downstream 183174 8325243 ~ 8331539 (-)
mrtfba LOC107734216,LOC107669223,LOC107584111,LOC107692080,LOC107554034 coding downstream 189672 8303767 ~ 8325041 (-)
mgrn1a mgrn1a,LOC107734214,LOC107669220,LOC107584113,LOC107554032 coding downstream 236548 8267774 ~ 8278165 (-)
foxj1b foxj1b,LOC107584215,LOC107734171,LOC107669185,LOC107692083,LOC107731389,LOC107554021 coding downstream 248085 8263110 ~ 8266628 (-)
rsl1d1 rsl1d1,LOC107584214,LOC107734245,LOC107554037,LOC107692074,LOC107682682 coding upstream 1995 8517178 ~ 8520053 (-)
LOC122355888 NA coding upstream 3052 8518235 ~ 8518365 (-)
LOC122355887 NA coding upstream 3797 8518980 ~ 8519109 (-)
gspt1 gspt1,LOC107692072,LOC107690055,LOC107734224,LOC107554042 coding upstream 5317 8520500 ~ 8528474 (-)
dmc1 dmc1,LOC107690066 coding upstream 13562 8528745 ~ 8531253 (-)
G86608 NA non-coding downstream 170104 8344336 ~ 8344609 (-)
G86606 NA non-coding downstream 174898 8339456 ~ 8339815 (-)
G86576 NA non-coding downstream 224303 8290080 ~ 8290410 (-)
G86553 NA non-coding downstream 315589 8198918 ~ 8199124 (-)
G86505 LOC107692108,LOC107584217,LOC107734162,LOC107669195,LOC107731388 non-coding downstream 324428 8187641 ~ 8190285 (-)
G86775 NA non-coding upstream 20790 8535973 ~ 8538206 (-)
G86798 NA non-coding upstream 82211 8597394 ~ 8628972 (-)
G86807 NA non-coding upstream 108114 8623297 ~ 8626329 (-)
G86809 LOC107731413,LOC107584098,LOC107734194,LOC107663181 non-coding upstream 111911 8627094 ~ 8630207 (-)
G86825 NA non-coding upstream 160463 8675646 ~ 8747077 (-)
LOC122355061 tnfrsf17,LOC107554040,LOC107692075,LOC107690067,LOC107584106,LOC107734209 other downstream 1448 8511403 ~ 8513265 (-)
cpped1 cpped1,LOC107584109,LOC107669238,LOC107554009 other downstream 154721 8334404 ~ 8359992 (-)
G86203 NA other downstream 1125803 7388236 ~ 7388910 (-)
G86108 NA other downstream 1410495 7103880 ~ 7104218 (-)
G86049 LOC101886504,LOC101886427 other downstream 1843466 6670319 ~ 6671247 (-)
G86783 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 other upstream 95369 8610552 ~ 8612445 (-)
plbd1b LOC107578697 other upstream 167260 8682443 ~ 8687548 (-)
trnar-ccu_66 NA other upstream 172315 8687498 ~ 8687570 (-)
LOC122355288 LOC107660874 other upstream 360434 8875617 ~ 8878131 (-)
thrab thrab,LOC107584392,LOC107733455,LOC107657272,LOC108430158,LOC107665883,LOC107723634 other upstream 796470 9311653 ~ 9939849 (-)

Expression


Co-expression Network