mxtx2 (mxtx2,LOC107566646,LOC107675004,LOC107754102,LOC107722443,LOC107563796)


Basic Information

Item Value
gene id mxtx2
gene name mxtx2,LOC107566646,LOC107675004,LOC107754102,LOC107722443,LOC107563796
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 12858248 ~ 12859528 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254358.1
TTTACTCTTACAGCTCAAGATGGAAACTCACAGGCCAGTAAGATTGCAGGCCGAAGGAAAAGAACCTGTTTCACCAAAGAGCACTTGGAACTTCTGAAAATGGCTTTCAGTGTGGATCCCTACCCTGGTATTAGTGTCAGGGAAAGTCTATCTCAAGCCACAGGCCTTCCAGAGTCACGTATTCAGgtgTGGTTCCAGAACAAGAGGGCCAGAACCCTAAAGAACAGAGCCACTCGGACCTCACCGCAGCTGGACAGTACCTCTCCTCTGCCCAGTCCTTTTCTACCCCCTCACATGGCTAGTGTTGGGGTCAATGGTCAGCAGAGAGGCATTCAGGAGTCATCCTTTAACATTCAGATGGCTCAAACATCTCCACAGCACTTTACCTTTCCTCCAACTGACTACAGCACACCTGCCATTAAGCCACGGAAAAACAGGCTGATGGGAACCAGCTCTTGTTCTCCCTCACTTCCCTCTGATCTGCAATCTGGGGCAGACAGCTGGAGCTCTGGAGGAAGCACACAGTCCTCTCCTGAGTCTGCATGGAATCTACCAGCGCAGAATTTTGGAAATTCCTACAAGGATGAGAGCCATTTCTTCCTCTACCCACCACCTCCTTATCCTCATGGAAGTGCCAAAGTTGGGTGTGTTAGTGGCCTGGAGTCACTTTCCACCTCTCCTGCCTCTTCAGACTCTGCATTTTGGGACATGGGACTGGAAAACTGCTCTCCTTCTGTGCCATACACGGACTGTGGAAGCCCATGGGACAGGCTCGCTGATGAGGAGCCTGTGGCCCCACTTCCAGATCTGTCTTCCCAGTATCTGGAAGATGTCCTTGGGGAAATGGAGCCAACCTGGTGGAACTTCAATGGCCAGATGGATCTACAGTAATCTTGCAAAAATccataaacaatgttttaacaCTGGGTTTTAACTGGAGGGTAGGGTTCTTTCTTTTAGACTGTATTATATAGGAAGCATGGTATTGTGCAAGTGCCGGTTACAGAGCAATATCAGATATCCACAtcagactttttatttatataatggactttatttatttatattttctacaaATGAGTAGATTGGAAACAGTAGAATATGGTTGCACCAGAATGTTATTTAGAACTTATTTATTCTTCATGCTCTTTTAAGGTATTACAGTGCAGTTGTGatatttatttctaca

Function

symbol description
mxtx2 Enables sequence-specific DNA binding activity. Acts upstream of or within actin filament organization and gastrulation. Predicted to be active in nucleus. Is expressed in blastodisc; internal yolk syncytial layer; margin; marginal blastomere; and yolk syncytial layer. Orthologous to several human genes including DUX4L5 (double homeobox 4 like 5 (pseudogene)); DUX4L6 (double homeobox 4 like 6 (pseudogene)); and DUX4L7 (double homeobox 4 like 7 (pseudogene)).

NR:

description
diencephalon/mesencephalon homeobox protein 1-like isoform X2

GO:

id name namespace
GO:0001706 endoderm formation biological_process
GO:0042074 cell migration involved in gastrulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007015 actin filament organization biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24896 DUX; double homeobox protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254358.1 True 1189 mRNA 0.46 2 12858248 12859528

Neighbor

gene id symbol gene type direction distance location
adgra1a adgra1a,LOC107754080,LOC107675035,LOC107565950,LOC107693584,LOC107563791,LOC108426471 coding upstream 16283 12815191 ~ 12841965 (+)
gabrz gabrz,LOC107675029,LOC107677887,LOC107743757,LOC107754081,LOC107565977,LOC107563789,LOC108426470 coding upstream 45264 12791289 ~ 12812984 (+)
valopb valopb,LOC107566010,LOC107754082,LOC107743790,LOC107677889,LOC107675006,LOC107563788,LOC108426422 coding upstream 84553 12766125 ~ 12773695 (+)
gjz1 si:rp71-1c10.10,LOC107675010,LOC107563802,LOC107754116,LOC107677869,LOC107743778 coding upstream 106516 12750626 ~ 12751732 (+)
znf668 znf668,LOC107675019,LOC107754087,LOC107743759,LOC107563787,LOC108426467 coding upstream 108242 12746551 ~ 12750006 (+)
bms1 bms1,LOC107675025,LOC107689949,LOC107566656 coding downstream 606 12860134 ~ 12877268 (+)
gfra1b gfra1b,LOC107755550,LOC107702444,LOC107581544,LOC107689950,LOC107707958 coding downstream 222645 13082173 ~ 13107311 (+)
ablim1b ablim1b,ablim1,LOC107565789,LOC107689952,LOC107581547,LOC107755543 coding downstream 344254 13203782 ~ 13268621 (+)
afap1l2 afap1l2,LOC107755545,LOC107702445,LOC107689955,LOC107707932 coding downstream 415705 13275233 ~ 13307508 (+)
si:ch211-225b10.3 LOC107702429,LOC107566028,LOC107755542,LOC107707918 coding downstream 474698 13334226 ~ 13339065 (+)
G87753 NA non-coding upstream 299516 12556682 ~ 12558732 (+)
G87718 NA non-coding upstream 380339 12476805 ~ 12477909 (+)
G87669 NA non-coding upstream 618047 12239783 ~ 12240201 (+)
G87665 NA non-coding upstream 699740 12158246 ~ 12158508 (+)
G87664 NA non-coding upstream 700433 12157586 ~ 12157815 (+)
G87891 NA non-coding downstream 40544 12900072 ~ 12900399 (+)
G87934 NA non-coding downstream 336456 13195984 ~ 13197074 (+)
G87979 LOC107755539,LOC107566694,LOC107702418,LOC107708141,LOC107689963 non-coding downstream 489421 13348949 ~ 13383848 (+)
G87981 NA non-coding downstream 500786 13360314 ~ 13361050 (+)
G88010 NA non-coding downstream 569885 13429413 ~ 13431559 (+)
gall si:rp71-1c10.8,LOC107677873,LOC107743798,LOC107675007,LOC107566084,LOC107754084,LOC107563807 other upstream 95517 12760374 ~ 12762731 (+)
G87817 NA other upstream 120599 12732764 ~ 12737649 (+)
nbr1a nbr1,LOC107669491,LOC107706899,LOC107582742,LOC107727312,LOC107666919 other upstream 912613 11936841 ~ 11945635 (+)
hoxb6b hoxb6b,LOC107669478,LOC107706870,LOC107582852,LOC107552740,LOC107666911,LOC107727299 other upstream 974151 11882151 ~ 11884097 (+)
G87315 zeb1b,LOC107666916,LOC107706887,LOC107727309,LOC107582755,LOC107552760,LOC107669492 other upstream 1156593 11694844 ~ 11701655 (+)
G88016 NA other downstream 582415 13441943 ~ 13444915 (+)
G88082 NA other downstream 736266 13595794 ~ 13596348 (+)
gucy2g gucy2g,LOC107702423,LOC107755438,LOC107722192,LOC107581632,LOC107684125,LOC107571103,LOC108273537 other downstream 996167 13855695 ~ 13864743 (+)
LOC122355339 LOC107702424 other downstream 1034833 13894361 ~ 13904627 (+)
rnf157 rnf157,si:dkey-49c17.3,LOC107702467,LOC107755520,LOC107684047,LOC107722211 other downstream 1118643 13978171 ~ 13993044 (+)

Expression


Co-expression Network