pdap1a (pdap1a,LOC107734239,LOC107584100,LOC107690063,LOC107554049,LOC107731397)


Basic Information

Item Value
gene id pdap1a
gene name pdap1a,LOC107734239,LOC107584100,LOC107690063,LOC107554049,LOC107731397
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8602210 ~ 8606138 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254384.1
CGGCCGCTTGACGTCACTCTCAGGAAGCGGCAAAATAGTGCTTTCAGCGTTGAGTCGGCGAGGTCGCGTCATATTTAACTTTCAAAGAGCTAATTTTAAGGCTCACAGAACACAATAAAGATATTCAGTGCTTCCGGGTATATTTAAATTAAGGaccaaacataatttttttcccccctgagGGTTTTCATCGTCAAAGAGTGTTTCAACAATGCCGAGAGGAGGCAAAAAGGGCCATAAGGGCCGTGGGAAGCAGTTCAGCAACCCCGAGGAGATTGATCGGCAGATGAGAGCTCAGAGGGAAATGGAAGCAAATGAGGGGGCTGAACGTGGAAGTTCATCAGAATCTGAAGAGGAGAGCAGCAGTGATGATGAACCAAAAAGGAAAGGTGTGGAAGGACTGATTGAAATTGAGAATCCCAACAGGGTCTCCCAAAAGAGTAAGAAGGTTGTAGAAATAGATGTCAATGAACCTAAAGAGCTCTCACGCCGGGAAAGGGAGGAGATCGAAAAGCAGAAAGCTAAAGAGCGATACATGAAGCTGCATCTAGAGGGGAAGACGGAGCAGGCCAGGGCAGACCTTGCCAGGCTGGCCATTATAAAAAAGCAGAGGGAGGAGGCagcaagaaagagagaagagctGAGGAAAGataaagaaGCAGAAGAGGCGAAGTCGAAACGCTAGTCCAAGCATCAGTACACAGGACGGGGCTTTTCTGGGGAGGGAGGGAAGGGGACTAGTTATTTAGAGGAGACAGCTCAGGGGAATCTATACATGTCATTCTTCCAGCCAGCCAAGGTTGGAGGATTTGGACATTTATAGGAAGTCAAATGGGAGGTGGTTTATGGTGTTGGAGTTTgttgggtttttatttttaataccacCAAACTTCACTCACCTTATCCCTCTCCTGACACATTCACTGTGCTCAGACTCTAAAGCTGCTGGAGTTTACTCTCAATTTCTACATTTCTATGTTATCACCATTACATTAGACTGGGATGTTATGGAAGAGTGAGGTAGGGTTGCAGGTGTGCTCACATGAGCTGACGGGGAAGAATGAAGCAGGTTGTAGAGTGGAAAACACTAACTAGACGTTTCGTCTTTTTATGTAAAGAACAACATCAGCCCTTCTACTGTACTGTTCTGTCAATCTTTGTGGCCTCATTCTGTTTAAGTGCAAAATGCATCTGTAGTCAAAGGTTAATAGAAGGTTATTTTGGTTGTTACCTCTTGAAATCAGGGCATGCTGGAACCTAATGCTGCAGgttacatcatttaaaatgttattgtttttaagtacttaaacacaatataatgcaatttcacagaaaaaggcATCACTATCATCAGGACTGTATTAAAGTAGCTGGTGGAGCTGTTGCATGTCTGCTGTCACCACATCATCTTCTATAATGCCCCTCTGCTCAGGGGTTTTCCATTTCTCTTGAGGTGGGACCATTGTTTCTGTCACTACCAGACTCACTGGTGTGTGTCTTCATAGTATTTTGAAGAGTTTTTATGCTTTAGCCCGTTACTGGTACCTGACTTGCCTTGACCATTTAAGGAAAGCAATATTACATAGATGATGCTTATGGTGCAACATTTTTTCCAGTTCTTAAACACAATTATTtacaaagtattttaacatttgtaaagCATTCACCAGTACTGAAGTAAGTATTTACGTGGGGTATTGATATAAAATCAGTGGAATTCCTTATTTCAAACttgtatacaaataaataaatagataaacgaa

Function

symbol description
pdap1a Predicted to be active in cytosol. Orthologous to human PDAP1 (PDGFA associated protein 1).

NR:

description
PREDICTED: 28 kDa heat- and acid-stable phosphoprotein-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0015711 organic anion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015355 secondary active monocarboxylate transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254384.1 True 1763 mRNA 0.42 6 8602210 8606138

Neighbor

gene id symbol gene type direction distance location
sh3bp1 sh3bp1,LOC107692101,LOC107731399,LOC107690072,LOC107554025,LOC107734168,LOC107584210 coding downstream 1296 8591741 ~ 8600914 (-)
tnrc6ba LOC107584179,LOC107690060,LOC107692068,LOC107734183,LOC107731400,LOC107554046 coding downstream 32136 8556275 ~ 8570074 (-)
csnk1e csnk1e,LOC107584103,LOC103024972,LOC107731422,LOC107690058,LOC107734231,LOC108431980 coding downstream 46559 8550384 ~ 8555651 (-)
tmem184ba tmem184ba,LOC107690057,LOC107584104,LOC107554044,LOC107731404,LOC107692069 coding downstream 52377 8541219 ~ 8549833 (-)
tomm22 tomm22,LOC107690071,LOC107554024,LOC107734246,LOC107584213,LOC107692102,LOC107731386 coding downstream 67569 8531984 ~ 8534641 (-)
slc16a8 slc16a8,LOC107734169,LOC107690073,LOC107584209 coding upstream 499 8606637 ~ 8611224 (-)
cby1 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 coding upstream 5111 8611249 ~ 8612461 (-)
LOC122355698 phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 coding upstream 28754 8634892 ~ 8636912 (-)
LOC122355697 phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 coding upstream 31273 8637411 ~ 8638883 (-)
kctd17 kctd17,LOC107584096,LOC107734225,LOC107692061 coding upstream 62258 8668396 ~ 8681985 (-)
G86775 NA non-coding downstream 64004 8535973 ~ 8538206 (-)
G86608 NA non-coding downstream 257601 8344336 ~ 8344609 (-)
G86606 NA non-coding downstream 262395 8339456 ~ 8339815 (-)
G86576 NA non-coding downstream 311800 8290080 ~ 8290410 (-)
G86553 NA non-coding downstream 403086 8198918 ~ 8199124 (-)
G86807 NA non-coding upstream 17159 8623297 ~ 8626329 (-)
G86809 LOC107731413,LOC107584098,LOC107734194,LOC107663181 non-coding upstream 20956 8627094 ~ 8630207 (-)
G86825 NA non-coding upstream 69508 8675646 ~ 8747077 (-)
G86826 NA non-coding upstream 73967 8680105 ~ 8744645 (-)
G86848 gna13a,LOC107660858,LOC107584085,LOC107734232,LOC107554062,LOC107692049 non-coding upstream 215742 8821880 ~ 8823436 (-)
LOC122355061 tnfrsf17,LOC107554040,LOC107692075,LOC107690067,LOC107584106,LOC107734209 other downstream 88945 8511403 ~ 8513265 (-)
cpped1 cpped1,LOC107584109,LOC107669238,LOC107554009 other downstream 242218 8334404 ~ 8359992 (-)
G86203 NA other downstream 1213300 7388236 ~ 7388910 (-)
G86108 NA other downstream 1497992 7103880 ~ 7104218 (-)
G86049 LOC101886504,LOC101886427 other downstream 1930963 6670319 ~ 6671247 (-)
G86783 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 other upstream 4414 8610552 ~ 8612445 (-)
plbd1b LOC107578697 other upstream 76305 8682443 ~ 8687548 (-)
trnar-ccu_66 NA other upstream 81360 8687498 ~ 8687570 (-)
LOC122355288 LOC107660874 other upstream 269479 8875617 ~ 8878131 (-)
thrab thrab,LOC107584392,LOC107733455,LOC107657272,LOC108430158,LOC107665883,LOC107723634 other upstream 705515 9311653 ~ 9939849 (-)

Expression


Co-expression Network