LOC122355830 (tceb2,LOC108280902,LOC107564001,LOC103036770,LOC108427344)


Basic Information

Item Value
gene id LOC122355830
gene name tceb2,LOC108280902,LOC107564001,LOC103036770,LOC108427344
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 5762494 ~ 5765843 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254394.1
CTGGTGATTCAGATATCCTTTTCTGCTAATTACTcaagaataatattattatgagTCATACTATTCGTAATATCTCGCGCCACACGAGTTCATATGCTTCCGGAGCGGGCAATGACGTAGCACAATGCTTGTTcttggtgcattgtgggatagtGGAGGGTTGTGAGGTGGTAAATGGTGGCTACAGAACCGCTAAAATGGATGTATTCTTAATGATCAGGCGTCACAAAACCACGATCTTCACAGAGGCTAAAGAATCCACAACTGTCTATGAATTGAAACAAATTGTGGAGGGCATCCTGAAGAGGTCCCCCGAGGAACAGAGACTATACAAGgATGAACAGCCTCTAGAAGACAATAAGACATTAGGAGACTGTGGCTTTACAAATCAGACAGCTCGACCACAGGCTCCTGCGACTGTAGGACTGGCCTTTCGTATCAGTGATGATGCATTTGAGACCCTGCAGGTGGAATCATTTTCCAGCCCTCCTGAACTTCCTGATGTTATGAAGCCACAGGACTCTGGCAGTACAGCCAATGAACAGTCAGTGCAGTGAGCTGCACCTTATTGACGAGAGTATGAGAAGTGTACTAAAGCCGAGCTAGGTGCGGACTGAAACATGACGTGTAAATGCtgcaaatgaacatttaaagtCTGGCTTCCAGTCACCATTGAACTAAGCCTGTTATAAATTTACACAGAATAACTAACaaataagttttttgttttttagttgtacgtttactttattatttgggatgacacacattttttttcctgaattgACTGACCTCATTTTGTACATGTTCCTTATTTTGTTTGACTAAACAACATTTAACAAATTTGAAagtggacattttttttcttcaaaaaagacagttttaataatttattagatAAAAATTGTGGTTAATAGCACAAATGGCACAtgagatttttcttttcctttgctttattttatggtttttgtACTTGCATTAAATTTGCATTCAGACCAAAGCATACTCGCGGTTGTGTAACAACACTTGCTTTAATAACATTCACCACTGTGTGCACTTTTGATGGGTTTGTTACATACCAGAAAGAAAATGTTCTTGGAACAGTGGTCTGTGAAAGGCTGCACACTAAAAACATGGCCAAAactgtt

Function

symbol description
tceb2 elongin-B

NR:

description
PREDICTED: transcription elongation factor B polypeptide 2

GO:

id name namespace
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0006414 translational elongation biological_process
GO:0019901 protein kinase binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03873 ELOB, TCEB2; elongin-B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254394.1 True 1148 mRNA 0.39 4 5762494 5765843

Neighbor

gene id symbol gene type direction distance location
kbtbd2 kbtbd2,LOC107711671,LOC107674719,LOC107660299,LOC107708283,LOC107551836 coding upstream 62588 5691358 ~ 5699906 (+)
si:ch211-217a12.1 si:ch211-217a12.1,LOC107674759,LOC108431403,LOC106590406 coding upstream 78166 5668900 ~ 5684328 (+)
fkbp10b fkbp9,fkbp10b,LOC107674681 coding upstream 141154 5614079 ~ 5621340 (+)
ppp1r16a ppp1r16a,LOC107716460,LOC107653270,LOC107674642,LOC107727964,LOC107551825 coding upstream 197740 5543755 ~ 5564754 (+)
oplah oplah,LOC107716462,LOC107674627,LOC107653252,LOC107727975 coding upstream 229587 5510698 ~ 5532907 (+)
med1 med1 coding downstream 74360 5840203 ~ 5863290 (+)
LOC122355059 adprh,LOC108411014,LOC108274007,LOC105894051 coding downstream 558650 6324493 ~ 6391831 (+)
LOC122355310 LOC107569775 coding downstream 815745 6581588 ~ 6583943 (+)
plxdc1 plxdc1,LOC107732187,LOC107566549,LOC107694606 coding downstream 1033942 6799785 ~ 6961984 (+)
plcd3b plcd3b,LOC107751666,LOC107561636,LOC107662566 coding downstream 1417587 7183430 ~ 7219444 (+)
G85713 NA non-coding upstream 160313 5601474 ~ 5602181 (+)
G85687 stat5b,LOC107674616,LOC107556764,LOC107727963,LOC102309899 non-coding upstream 266260 5495107 ~ 5496234 (+)
G85685 NA non-coding upstream 269560 5491714 ~ 5492934 (+)
G85683 ghdc,LOC107556765,LOC107727961 non-coding upstream 276745 5483574 ~ 5485749 (+)
G85661 NA non-coding upstream 359782 5397563 ~ 5402712 (+)
G85774 NA non-coding downstream 55588 5821431 ~ 5821687 (+)
G85905 NA non-coding downstream 192051 5957894 ~ 5958234 (+)
G85967 NA non-coding downstream 332285 6098128 ~ 6098334 (+)
G85971 NA non-coding downstream 335319 6101162 ~ 6118513 (+)
LOC122355060 NA non-coding downstream 564494 6330337 ~ 6336029 (+)
drosha drosha,rnasen,LOC107716466,LOC107727962,LOC107556767 other upstream 315775 5426581 ~ 5446719 (+)
LOC122355392 pnmt,LOC107571312,LOC107676565 other upstream 653448 5081165 ~ 5109046 (+)
G85587 NA other upstream 672856 5088925 ~ 5089638 (+)
G85567 NA other upstream 1309219 4452855 ~ 4453275 (+)
LOC122355720 gnrh2,LOC107750862,LOC107671109 other upstream 1343281 4418247 ~ 4419213 (+)
LOC122355829 tgfb1i1 other downstream 554 5766397 ~ 5816315 (+)
becn1 becn1,atg6 other downstream 121109 5886952 ~ 5953486 (+)
G85962 NA other downstream 330105 6095948 ~ 6096732 (+)
G85986 adprh,LOC108411014,LOC107726130,LOC105894051,LOC108274007 other downstream 449076 6214919 ~ 6216567 (+)
G86019 LOC107570179 other downstream 674978 6440821 ~ 6441526 (+)

Expression


Co-expression Network