plcd3b (plcd3b,LOC107751666,LOC107561636,LOC107662566)


Basic Information

Item Value
gene id plcd3b
gene name plcd3b,LOC107751666,LOC107561636,LOC107662566
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7183430 ~ 7219444 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254397.1
CGTCAGCACAGCGCCGTGTATGGTAAGAATTTATGATGCAGTCCAGCCTCGATCAACCCGTTTGTTATAAATTGTCGgtgtatttaagttttattttgaatatatcgtcgctgtattttttatttattcttcacGCCTGCGTCTAATCTCATTTAAACGACCTGCTTTCATGAATATATACGTCGATGTTTATCATTCAGTTCTAGAGCACAGATAGGACAATAGCATATACGTCTGTGTTTATACACTTTTAAGCGGCATCAATTTcgttatatttatgtatgttcgAATTTTTGTACCTCGTAGACTGAAGAAATAAAACCGAAGCCAATGTTATGTCAAATAACAATAGCCGCTCTTTAACATTCATGAGCTCATTATACAGGGGCAGTGCCTATTCTGTTTTCTTACATATTCATGTGGAGCTGTATTAGAGTTAGCGCACACTATCCGGACAACCATCCGTGTATTCATCCACATAAACTCCAGTTTAAGACGCACAACGACCTACTGCGTCATGTTGAGAAAGAATGGTGCCGGGACGTCCCAACTTAAACCAGACGATCCCATGATAAAAATGGGGGTCCAGGACGATGATGATGTGAAGAGGATGCTCCAGGGGTCGTCTATGACGAAAGTGCGTTCTCCACGCTGGAAGAGGAAGCGCATGCTAAAGCTGATGAATGATGGAGTCACTGTCTGGTGTGAGTCCAACAAGGCCACCAACAAAGCCAAAAGTCAGCAGTCCTtCTCTGTGATGGAAGTGGAGTGTGTGCAGGAGGGATGCAAGTCTGAGACTTTGAGACACCTGGCAACCTCACTGCCAGAAGAGCAGTGTCTTACCATTGTGTTTAAGGGAGGAAGGAAGAGCTTGGATCTCCAGTGTGACACAAAAGAAGAAGCCCAGCACTGGGTCCGTGGCATTCAAACCCTGCAGGATAGAGTCAACAACATGACTCAGAAAGAGAAACTTGACAACTGGATCTATGGCTACCTGAAACAAGCTGATATGAACCATGATGGCAAGATGTCATACGAGGAGGTCCAGACCCTTTTCAAGATGATCAACATAGACCTGAGTGAAGAAAATGCAGCCAGTCTGTTCAAGAAGTGTGATAAGTCAGCAGATGGGCGGCTTGAACATGAGGAGATTGAGCTGTTTTGCCGTGAGTTACTACGTCGTCCTGAGCTAGATGGAGTGTTTCAGCAGTACTCCGCTAATGGTTATGTCATGTCCACCATGGATTTGCGTGAATTTCTCAAAGACCAGGGTGAAGACCACACACTTGTACATGCTCAGAGCCTCATCCTTACCTATGAGCTCAATGAATGGGCCCAGAAGAACCAGTTTATGACACCCAATGGTTTTGCCATGTACATGCTATCTAAGGAGAATGATGTGTATAACCCAGAGCATAGCAGAGTCTACCAGGACATGAGCCACCCACTCAGTCATTACTTTATCTCCTCCTCACACAATACCTACCTCACTAAAGACCAGCTCATCAGCGAGAGCAGCGTTGACCCTTATATCAGAGCTCTGAGCCAAGGCTGTCGCTGTGTGGAACTGGACTGCTGGGATGGGGAAAAGGAGCCAGTTATATACCATGGGCACACCCTCACATCCAAAGTGCCATTTAGCGAGGTTTTGAAGGTCATCGCTGAATATGCATTCAGGACCTCTCCATATCCTCTTATTCTGTCTCTGGAGAATCACTGCGGTGTCGAGCAACAGACTATCATGGCCCGGCAGCTGCACTCAATTCTGGGGGACAAACTGATCACTAAACCTCTTAATGACAAGCCGCTTCTGTGCCTACCATCACCAGAGGACCTGAAAGGAAAGATCTTgataaaagcaaagaaaatcaAAGAGAATGAGGACAGCTCCAGCTCTGACTCAAGCTCCTCAGAGGATGAATTTAAAGCTGAAAGCAAACCTAACACATTGAAGAGGGACTGCAAGTTGAGTACAGAGCTGTCTGATCTTGTGGTGTATACTCACAGTGTTGCTTTCAAACAATTTAATCAATGTGCCAAGAAGCATCCCAATGAAATATCATCGTTCTCAGAGAGTGATGCATTAAAGCTAATCAAAGAAACAGggAAGCTGTTTGTACGTCACAACAGTATGCAACTGAGCAGGATCTACCCATCTGGTCAGCGTGTGCAATCTTCCAACTACAACCCTCAAGACATGTGGAATGCCGGTTGTCAGATGGtggcATTGAACTTCCAAACCCAATGTGAAGAAATGGATCTAAACAGAGGCCGTTTTTTACCAAATGGCTGCTGTGGCTACTTGCTAAAACCAAGCTTCATGTGCCAGCCTGATTCAAATTTTAACCCGGAAAACACTGGGGGAGGCCCTGGCCACAATCCAACACTGCTTACTATCAAGGTGATTTCAGCCCAGCAGCTGCCTAAACCTGACAAAGAGAAGCTCAGCTCAATTGTAGACCCTCTTGTATGCGTGCAGACTTATGGGGCTCCTATAGACAACAACACAAAGAAGACGCACCGCATTGACAATAATGGCTTTAACCCCACATGGGGTTGCACCTTTAAGTTCCAGCTGCATGTGCCAGAGCTGGTATTAGTACGCTTTAAAGTTGAAGACCATGACTACGCCACCAAGAATGATTTTCTGGGTCAGTTTACGCTTCCTCTCACAAGCATGCGGACAGGTTACAGACATGTTCATCTGCTAAAGGCAGATGGCTCTAGCATGTCACCCTCCAGTCTCTTCATCCACATTAAAATCACACCTGGCTACAGCAGTCCTGCTAGAAAAATTGGTTCTTGTGGTGCCAGGGAATAATGCAATGAGTTAAAGCACGCAGGATGCTCTTAtttgggaaattacatttttatatcaaatttgAGACCCAGACGAGTGTGAggcattatcatttatttaaaaatgctgcagAAGCCATTTCACACAATggaatataatgtgtttttcttgttttccagtaaacaTAAGTAAATAttctcagtttttattttacagggAAACAAAATAACTAGACTGAATACAGTGTAATATACTGTAACATGGACACAGAGGCAGCATTGGGATCCATATGCGAaagtttattaaatacagatCTCACATAAAGAGTCAACAGGCAGTGTGTCAAAACCAAAATAGCAGTTTGACATAAAGAGGGCAAATCCAAAAGGGCAGAGTAGGTAAACAAGCAATAGGTCCAAACCACAATTGCAATCCAAACAGGCAAACATAGCAATAGGGGAAATCCAGGAAATCAGTAATCAGAGAAACAGGCAGAGTCATAAATAGAGTAGCAGGCAGAATGAGAAGGGAGAACGCTCAGTAAGGCAGGATAAACTGCCAATACTTCGCATTTGAACACATGGAGGGCTTCTGGTTATAAATCCCtccaaacaggaagtggatgCAGAGGAAGCAGAGCAGTTGAGCACAgcgagggctccctctgctggttggaTGTTACACATAGCAAGGTATGACTTGAATTAAGTTAAGGCTTACCATTTAATTGTGAcaatttctgtatatatttttactggaaaacaagataatatgtttaagaaaagtattattattattattattattatatacatagaTGTTCAAATCTAAGCATATTCAAAAGGTACAATGTCAATGTTGTTATGTGATGTCTTAAAATGGCAATgctatacatttaatatgtacCAGCTCATGTTATgtaaaattgttacattttcctaacaaaacatttttactatgcAGTTAATAGTGGAAAATGAAGCATATTTGTTGACAATCACCAGCCAATGTAGTCCTTATGTACTTTGTACAATAAGAGTTCTCTAAATCTGCTGCACAAGATGTCAACATAAGACAATTTAAGAAagcaaaaagtgattttatttgttttgttgccAAGTTAActctaaaacattttgaactcttatgttaaagtatttaaaacacaacttgtgTAGCAGTTACTTAGTTCCTcaaatatttatcatgtatttatagaatagtaattgtaataaaatagtaGTATTAATAGAATAGAATCTTTAGAGTATTTCTCTCAAAGTACAGTTTTGGCTTTAGTAGTTTTAGTCTAATTATAAATGCTTGAAAACACTATGTTCTGTTTGTGTTGATATGTTACCTGATTGgtaaatatgatattaatacTAATGAACAGAATTAATGCCAAGTACTCCATCATGTAGCTGTAAGGTCCACGAATTTGCCCAAGGAAGGTGTCCAATGGTGGAAGAAAGTTTCCTGCATTTTTTGTCTCTTCAGCACGTAATGTTATTCAATTTTAGGCTAAACTCAAATCTGACTCcatgttaaaaattaatctGACTCCATTTTGTCTGTTTCTAAATAGTGTTTTGATATTTGGTTATTCTAgttaactagtttttttttatccacttgTTCATTCGGGTGCACATGTAGCTAGCAAGGATACATTGTAATTTACTCAATTACAGAGTGAAACAGTATAAGACCAAATGTAACCATTTCTTATCAGTCAggtaaatatgtattatgccAATTCAAACACATCATATTAATACAAAGTTCAAGAATCAAGTTCTCGGAGACtaatctaaaagtaaaatgtgCATACCTGACCTTAAGAAATATATAGTATGAAGTGTAGGGAAACACTCCATACTAAGGGCTTTCTGGTTACAGAATCTCGCTGACCCTTGCTACTTTCCTTTAAATACCAAATCAACATGAGACATCCCCCCCAAATGAAGGAAAGTACCAAAGAATTGGAATTTGCATTAACCCAAGTGTCAGACTTGGGTAGTTTACGCCTCAGTGGGAACAGAAGGTAATTTACATGGAATGACTCTTGGAGAGGGCACACccattgcaataaataaaatagctatAAAATCTTCAAATCTTTGTTAACGTTAAGTTTACTTCTCTAGAAATAAGACCATTGTACCAGTCGCACTGAGACATTTCAAATGATACTAGACATGACTGTTAGTCCACTCACATTGGCCTTTTTTATGTAGCAAGCTGAGTAGAAGGAAAGATTGGGCGGAGGGGTTTTAGAAAGAACCGAATGGGAAGGTAGTTTCCTACTCCTCCACTCTGTGGGGTGTCTTGAAGATGTCTTTATGTTTGCATTGTCTGTTTCACAGGAAATAAAAGTATCTGAAGTTCTTTTATA

Function

symbol description
plcd3b Predicted to enable phosphatidylinositol phospholipase C activity. Predicted to be involved in phosphatidylinositol-mediated signaling. Predicted to act upstream of or within intracellular signal transduction and lipid catabolic process. Orthologous to human PLCD3 (phospholipase C delta 3).

NR:

description
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-3-A-like

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0005509 calcium ion binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0004435 phosphatidylinositol phospholipase C activity molecular_function

KEGG:

id description
K05857 PLCD; phosphatidylinositol phospholipase C, delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254397.1 True 5198 mRNA 0.40 15 7183430 7219444

Neighbor

gene id symbol gene type direction distance location
plxdc1 plxdc1,LOC107732187,LOC107566549,LOC107694606 coding upstream 221446 6799785 ~ 6961984 (+)
LOC122355310 LOC107569775 coding upstream 599487 6581588 ~ 6583943 (+)
LOC122355059 adprh,LOC108411014,LOC108274007,LOC105894051 coding upstream 791599 6324493 ~ 6391831 (+)
med1 med1 coding upstream 1320140 5840203 ~ 5863290 (+)
LOC122355830 tceb2,LOC108280902,LOC107564001,LOC103036770,LOC108427344 coding upstream 1417587 5762494 ~ 5765843 (+)
nmt1b LOC107561637,LOC107662571,LOC107758416 coding downstream 6418 7225862 ~ 7233649 (+)
svild LOC107758427,LOC107675649,LOC107561632 coding downstream 14494 7233938 ~ 7292140 (+)
znf281b LOC107727698,LOC107584153,LOC107661093,LOC107594149 coding downstream 146890 7366334 ~ 7374805 (+)
muc13b NA coding downstream 159483 7378927 ~ 7385963 (+)
lrp2b LOC107753462,LOC107669174,LOC107584197 coding downstream 184108 7403552 ~ 7472715 (+)
G86110 hexim1,LOC107733802,LOC107661096,LOC107662567,LOC107561639,LOC107751667,LOC107576140 non-coding upstream 10101 7129610 ~ 7173329 (+)
G86106 NA non-coding upstream 88120 7094999 ~ 7095310 (+)
G86097 NA non-coding upstream 172018 7011188 ~ 7011412 (+)
G86095 NA non-coding upstream 174252 7007827 ~ 7009178 (+)
G86047 NA non-coding upstream 509360 6673340 ~ 6674070 (+)
G86131 NA non-coding downstream 2084 7221528 ~ 7221955 (+)
G86140 NA non-coding downstream 77874 7297318 ~ 7297543 (+)
G86141 NA non-coding downstream 78239 7297683 ~ 7298034 (+)
LOC122355189 NA non-coding downstream 98056 7317500 ~ 7319591 (+)
G86202 NA non-coding downstream 168224 7387668 ~ 7388981 (+)
G86029 NA other upstream 660859 6521829 ~ 6522571 (+)
G86019 LOC107570179 other upstream 741904 6440821 ~ 6441526 (+)
G85986 adprh,LOC108411014,LOC107726130,LOC105894051,LOC108274007 other upstream 966863 6214919 ~ 6216567 (+)
G85962 NA other upstream 1086698 6095948 ~ 6096732 (+)
becn1 becn1,atg6 other upstream 1229944 5886952 ~ 5953486 (+)
G86142 NA other downstream 83694 7303138 ~ 7304848 (+)
G86143 NA other downstream 88480 7307924 ~ 7308229 (+)
LOC122355675 NA other downstream 596379 7815823 ~ 7844083 (+)
msrb1b msrb1b,LOC100705913 other downstream 885704 8105148 ~ 8106780 (+)
hbbe2 hbbe2,LOC107734191,LOC105910203 other downstream 976520 8195964 ~ 8197904 (+)

Expression


Co-expression Network