ghdc (ghdc,LOC107556765,LOC107727961,LOC107716443,LOC107577004)


Basic Information

Item Value
gene id ghdc
gene name ghdc,LOC107556765,LOC107727961,LOC107716443,LOC107577004
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 5477522 ~ 5486280 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254413.1
cacaaaagaagaagaagaagttgtTTTCAATGTTTGGTTTCGGTTTTCAATAATGACAAGTCCATCAAAATGAGGCAGACCCATCAGCGTTATTTGTGGACAATTTTACCATGTTTTGTTGCACTGTTGGCTGTGACCATTACATGTGCTCCTGTCACCGCTGTCAGTGCGCTCTTATTCCTGTGTGTCTGCTGTGTGGCTCTTCTATGGATGATAAAGATCAAGGATCGCTCCGTATCGAGTCTTTTGGCTCAGTATGTGGCAGTGAAAGCAGTGTGCTGGCTGGGGAAACGCCAGAGAAACAGACTAGAGGCAGACACGAGGGACATTCATCGCGTTCAAGAGGAGACTCTGCTAAAGCGTCTACAGAAACACTCCGACACAGTTTACGGCAAACAGTACGAGTTCACATCAATTAAAGATGTAGAAACATTTCAACAGCGCCATCCGATCACGGATTACGACCATTATGAAAAGTTTGTGGAGCGTGTGGCTAAAGGAGAGCAGAATGTTTTAATATCGGAAAAGCCTCTTATTCTGGCAATGACATCAGGAACATCTGGGTCCAGCCGTATGCTTTTGAGCACCAAAGACACCAATACAGAATTCTTCCTACAGGGGGTGACAGTTTGTCTAGATGCCATGAGACAAGCCTTTCCAGCTACCGGCTGTCTCCAGCAAACCCTGAAGCTCTTTTACTCACCCATTTTTCGTCAGAGTGAGGCAGGTATTCCTATCGGCCCTAACTCCTCAACACCTGCCTCTTCTAAACACATGCTGCATCTGTACACCACGCCAGCACCCGTCTATCAGGTGCTGAATGAGAGAGATGCGTTATATCTCCATCTGCTGTATGGGCTGAAGGACCACAATCTTGGCATGCTGGAATCCAACTTCTGCTCTACCGTCTTTTATGCCTTCAGAGCCCTTCAGGAACATTGGAAAGATCTTGTAGTGGATGTGGAAGTGGGCATGATCAGCTCCAGACTGAACCTGAAGGCTGATGTGCGCTGTGCCCTAGAGAAAGTGATGAAGCCGGATCCAGAGAGAGCTGCTGAGCTCACAGCCCAGTTTGAAAAGGGCTTTGAGGGAATCGCACTCAGGATATGGCCCCAACTACACCTGGTTCTGACAGTGGACTCAGGCTCCAACCAGATTTATGGGGAGATGTTACGGCAGCACTACTGTAAAGGTGTCCCGTTCTACTCCCCTTTCTACGCTGCCACTGaagGCCTGATAGGTGTGAACCTGTGGCCTCAGCAGGAGAGCAGACAATATCTGCTGAGTCCTCGCTCCATGTTCTATGAGTTTATACCAGTGGGGGATCTGGATTCGGCGCGGCCCAAAACTCTCCTAATGGAGCAACTCCAGGAAGGACATAACTATGAGTTGCTGGTCACCAATGCTTCAGGATTGTTCAGgtaTCGCATTGGAGATGTTGTGAAAGTAGTTGGATTTCATAACCAGTGTCCAAAAGTGAAGTTTGAGTATAGGCTTGGGCAGATGTTGAGCGTGCGTGGTGAGAAAGTGTCTGAAACACTGTTTTTGGGGGCTCTTAAGAGGGCAGTGACACAGTGGCCAGGAGCCAAATTAATAGACTACAGCTGCGTTGAGAGCGGAGTTTTAGGCAGTGCATCTGGAATAGCTCAACCACATTATCTTGTGTTTGTTGAGCTAAAGGGTGTGAGGAACCTCTCAGAGGAACAAAGATACAAGCTAGATCACTGCCTCCAGGAGGACTCTGATATCTACCGATCCTTCAGGATAAAGGGCAGCATTGGACCCATGAGAGTTCAGCTCGTTCGTGATGGAACatttcaagaactgaaagatcGCTTGATGGCCTTCTCCAGTACTTCGTCCAACACCTTCAAAATGCAGCGTGTTATACGCAGGAGAGAGTTTGCAGACTTTCTACTGCAGAGGGCTTTTTCCTGAGCATTTCAAATAGATATGAAAGAAGCAACGTTTTTGGCAATGCCAAAATATTTTCTGCTATCCTAGTTTTACATGCAGAGATAATAGATGGTTCctttaaaaagtgttacaaAGTGGTTCAATCTCATTtctaaaacagttttttgtttgaGCATTCAGACCAGCCAAAACATAGCAACATGAGTTTAGGATGGGACTATTAGTTTGTCACCAATGAAAGTCACAAAGATTGTTTGTAAAACAGGTTTTTGCTGCTAGAAAGATGGTTCTTGATCCTAGTCTTGggctgcgtttcccaaaagtTTAATTTGATCATACAGTCATCATTTGATCATTTGATTGGTTTCAATGGGTCTACATCGATATACTTAAGcttacaatgcttttgggaaacataGCCCTGGAGGATCCCAGTACTGCATATTTTGGATGTGTTCcttatttatctattataaaTAAGGGTGGTCATGACCTTCCACCTGTTTTAAACACCTTAGTCTTATTCAAATTAATGTGACACCCTATCAAATGAGCAAACATCTAAGCAGGTAAGCCAGCATGCAACtattatataaaacagaaatgaaggTACTTACAGTGTGGACAGGTCAGTCTTTATAATAAGAAAAGGCAGACTTGACAGTGTCTAATGTGAATCAGTGTTCTGTTTTTGACTGATGTACTTACCATTTCTACTTTTCCTATTTCCTCCCAACTGATGGGTACATTTCTATTATCACCTTATACCTGGTAGATAGCATTCTGAGCTTGAacgtctgtatatattttatgttagaTTGAGTCAGGGACAGCATTGGATTGCCATTTGCTTTACTGTGGAATCACAGAGAAGGATAGCCCAGCTCACCAGATGTTGGACAGAGGTACAGGTACTTTCGTCATTCTTTTCAGGCTGATACTGATACCTTTCTGATTGTCCAAGAAATGACTGAACATTTTATAGCGGGCAGCAAACAGAGAACATAGCAAATTTTTTACACTGTGTAATGCTGTGGAGAAGTCTTGCTTTAAGTGTGTatggttattaaataaaatatgcataatgaCTCTGA

Function

symbol description
ghdc Predicted to enable acid-amino acid ligase activity. Predicted to be active in cytoplasm. Is expressed in proliferative region. Orthologous to human GHDC (GH3 domain containing).

NR:

description
GH3 domain-containing protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254413.1 True 3011 mRNA 0.44 11 5477522 5486280

Neighbor

gene id symbol gene type direction distance location
emc9 emc9,LOC107716469,LOC107551848,LOC107674563,LOC107727956,LOC107653261 coding downstream 57656 5415899 ~ 5419866 (-)
pelo pelo,LOC107653258,LOC107674509 coding downstream 110379 5360364 ~ 5367143 (-)
ccser2b LOC107716476,LOC107653247,LOC107727960,LOC107569472,LOC107674460 coding downstream 147289 5280381 ~ 5330233 (-)
LOC122355389 grid1b,grid1,LOC106578986,LOC106589364 coding downstream 422407 4929813 ~ 5055115 (-)
LOC122355129 LOC107560557,LOC107753319,LOC107735415,LOC107694068 coding downstream 1240293 4232549 ~ 4237229 (-)
stat5b stat5b,LOC107716464,LOC107674616,LOC107653267,LOC107556764,LOC107727963,LOC107551841 coding upstream 1520 5487800 ~ 5504829 (-)
foxh1 LOC107716461,LOC107551840,LOC107556762,LOC107727966,LOC107653269 coding upstream 48893 5535173 ~ 5540436 (-)
adam11 adam11,LOC107716458,LOC107653271,LOC107727973,LOC107674663,LOC107551824 coding upstream 78328 5564608 ~ 5600663 (-)
dbf4b LOC107556759,LOC107727974,LOC107674674 coding upstream 116401 5602681 ~ 5613207 (-)
klhl11 klhl11,LOC107694394,LOC107556757,LOC107551837,LOC107674689 coding upstream 134858 5621138 ~ 5626937 (-)
G85572 NA non-coding downstream 1024246 4452755 ~ 4453276 (-)
G85569 NA non-coding downstream 1065322 4411340 ~ 4412200 (-)
G85553 NA non-coding downstream 1164474 4312579 ~ 4313048 (-)
G85551 NA non-coding downstream 1165618 4311453 ~ 4311904 (-)
G85545 NA non-coding downstream 1192587 4275337 ~ 4284935 (-)
G85868 NA non-coding upstream 241024 5727304 ~ 5731090 (-)
G85889 tgfb1i1 non-coding upstream 324377 5810657 ~ 5814446 (-)
G85891 NA non-coding upstream 334069 5820349 ~ 5821178 (-)
G85892 NA non-coding upstream 351092 5837372 ~ 5837674 (-)
G85893 NA non-coding upstream 352279 5838559 ~ 5838957 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other downstream 51011 5423084 ~ 5426511 (-)
G85779 atp2a1l,LOC107551849,LOC107716472,LOC107653256,LOC108274121,LOC107094295 other downstream 80610 5322478 ~ 5396912 (-)
LOC122355055 LOC107668612,LOC107583503,LOC107750859,LOC107717092,LOC107671135,LOC107559032,LOC107552862 other downstream 1060625 4412573 ~ 4416897 (-)
trnal-uag_71 NA other downstream 1081029 4396412 ~ 4396493 (-)
trnal-aag_72 NA other downstream 1084367 4393074 ~ 4393155 (-)
G85925 NA other upstream 498709 5984989 ~ 5987780 (-)
G85930 LOC107711793,LOC107755027 other upstream 504633 5990913 ~ 6012111 (-)
LOC122355418 pnmt,LOC107571312,LOC107676565 other upstream 564888 6051168 ~ 6078068 (-)
G86049 LOC101886504,LOC101886427 other upstream 1184039 6670319 ~ 6671247 (-)
G86108 NA other upstream 1617600 7103880 ~ 7104218 (-)

Expression


Co-expression Network