zgc:163057 (zgc:163057,LOC107584216,LOC107734190,LOC107692104,LOC107669180,LOC107594186)


Basic Information

Item Value
gene id zgc:163057
gene name zgc:163057,LOC107584216,LOC107734190,LOC107692104,LOC107669180,LOC107594186
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8203574 ~ 8205720 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254435.1
CTAATatttattgagtaaaacctaCTAAGAACGATGtagatttacttttatataagtTAATGTGCAGGATGATGATGCATCAGACAATATGTTATTACAAGAAAAACATCCTTAAAAATATTTGCTAATTGACTTGTCACAGCACAAAATGTGAGATATTAAAAGAGAGGGGCTTGTAAAATATAACCCACGAAGAACTAAACCATACTGCATTGGAAACAAATGAACAATCTATATAATTCAAAGATGAAGTAatcaatacattattattagttaaatgtGTCATAATGTATTAATTCCCAATGATATAATATTAACTAGTTGTGATACTTGTTGAGGAACAGCTAACCAATTGAAAATCCATAACCACAATGACAGcctattattttacaattagtTAACAGTTCTGAGCCTCAACAagtaaaatcaaaacatttgcaaaacattaataattcattaaagcAGTGAAATGGCGTTATTAGGCTACATTATAGCACATTTGACTACAAACTATGTATTTATCGCTTAATCTATAAATCATAAAGAACGTTCATCGGATGCTGGCGTAGTAATTATTACTAAATGGCTTAGTTCTTCATTAGTCATACGCCTATATTAATTTGTCACTGTCAATCAATGCATATTTGCGCGCCCGTATTGTTAAGGTTCACCATAAAAACTACAGGCTGCTATAGAGACACACAAAATTAGACCAATTAACTTTGACGTTCAGATGAAACGgttcaattaaaaatatcacagcCATAGTCAAATGTGCTAAGATGAGATTTTATACTTCTTGCGCAATACACGACCGATCTCTCTCAAGACCGCAGTCGGGATCCCGGCGTGGTAACGTAGGCTCTCCGAACGTGACGCAGAGGACGCTTAATTGCGCAGCTACGACTGTCACGTGATCAGGCTACCTCTAGCTGGCCGCTGAGATGAAGACAGCGACCGCGGGGAACTACATTTCTGCTAACTGCTCTCTTccattctatattttttaagtcGAGATAGGCGGAGTAAATTATGTGATCGAACATATACAGCAGAGCTGAATTATCCGCGTTGTTTAGAAACTTAGAAATTCAACTTATATTTATTCACCCGCGTTTAGATAGCCtagtgcaaatatatatttttttcttgtgccACGATAATTCGATAATGCTATCGAACACCGAAAAAGAGTTGATTGTACAGATATGGGACAAAATGCTTCCAGTGGCAGAGGAAATTGGATCTGAGGCTCTTTTAAGGATGTTCACAACGTTCCCCAAAACAAAGACATACTTCTCTCACCTAGATATCAGCCCCCGTTCAGAGCATTTACGCTGCCACGGGAAGAAAATCGTCCAGGCTTTAGCCGAGGGTGCGAGGAACATAAGCACGCTCACCACCACGTTGGCGCCACTAAGCAGGTTCCACGCCTATCAACTGCGAATACATCCAACAAACTTCAAGCTTTTCAATCATTGCATCCTCGTGACGTTAGCCTGCCACATGGGCGATAACTTCACACCTGTCGCACACGCGGCGATAGACAAGTTCCTTTCGGCATTCTCAGCAGTTTTAGCCGAAAAGTTCCGATGAGGACCCCCGCGAAGAAGAACGGGATGCTTTCGAGAACTCTCTGTGATGAATATACTGCCTAATACCTGTGTGTCAGTTGTTTGTCGTAATGTAATGCCATGGAATAATCAATTAAACTTTTATTGACTTTTA

Function

symbol description
zgc:163057 Predicted to enable several functions, including heme binding activity; oxygen binding activity; and oxygen carrier activity. Predicted to contribute to haptoglobin binding activity and peroxidase activity. Predicted to be involved in hydrogen peroxide catabolic process. Predicted to act upstream of or within oxygen transport. Predicted to be part of haptoglobin-hemoglobin complex and hemoglobin complex. Orthologous to human HBM (hemoglobin subunit mu).

NR:

description
Hemoglobin subunit alpha-D

GO:

id name namespace
GO:0015671 oxygen transport biological_process
GO:0005833 hemoglobin complex cellular_component
GO:0005506 iron ion binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254435.1 True 1728 mRNA 0.39 3 8203574 8205720

Neighbor

gene id symbol gene type direction distance location
hbae5 LOC107734189,LOC107594227,LOC107692106,LOC107674601,LOC107596827 coding downstream 8358 8194223 ~ 8195216 (-)
arhgap17a arhgap17a,arhgap17,LOC107594184,LOC107731407,LOC107669196,LOC107584117,LOC107699879,LOC107734204 coding downstream 24467 8155233 ~ 8179107 (-)
zdhhc4 zdhhc4,LOC107734165,LOC107669203,LOC107584218,LOC107594224,LOC107699875,LOC107731390 coding downstream 74555 8126083 ~ 8129019 (-)
LOC122355067 pgp,LOC107584220,LOC107669208,LOC107734160,LOC107731387,LOC107594223,LOC107699876 coding downstream 81484 8120334 ~ 8122090 (-)
bricd5 bricd5,LOC107734175,LOC107731433,LOC107669210,LOC107699874 coding downstream 83764 8115390 ~ 8119810 (-)
foxj1b foxj1b,LOC107584215,LOC107734171,LOC107669185,LOC107692083,LOC107731389,LOC107554021 coding upstream 57390 8263110 ~ 8266628 (-)
mgrn1a mgrn1a,LOC107734214,LOC107669220,LOC107584113,LOC107554032 coding upstream 62054 8267774 ~ 8278165 (-)
mrtfba LOC107734216,LOC107669223,LOC107584111,LOC107692080,LOC107554034 coding upstream 98047 8303767 ~ 8325041 (-)
ercc4 ercc4,LOC107734247,LOC107669240,LOC107692079 coding upstream 119523 8325243 ~ 8331539 (-)
snx29 snx29,LOC107584181,LOC107734208,LOC107690065 coding upstream 211512 8417232 ~ 8511214 (-)
G86553 NA non-coding downstream 4450 8198918 ~ 8199124 (-)
G86505 LOC107692108,LOC107584217,LOC107734162,LOC107669195,LOC107731388 non-coding downstream 13289 8187641 ~ 8190285 (-)
G86513 NA non-coding downstream 49401 8148747 ~ 8154173 (-)
G86516 NA non-coding downstream 90861 8111193 ~ 8112713 (-)
G86458 NA non-coding downstream 148543 8054768 ~ 8055031 (-)
G86576 NA non-coding upstream 84360 8290080 ~ 8290410 (-)
G86606 NA non-coding upstream 133736 8339456 ~ 8339815 (-)
G86608 NA non-coding upstream 138616 8344336 ~ 8344609 (-)
G86775 NA non-coding upstream 330253 8535973 ~ 8538206 (-)
G86798 NA non-coding upstream 391674 8597394 ~ 8628972 (-)
G86203 NA other downstream 814664 7388236 ~ 7388910 (-)
G86108 NA other downstream 1099356 7103880 ~ 7104218 (-)
G86049 LOC101886504,LOC101886427 other downstream 1532327 6670319 ~ 6671247 (-)
LOC122355418 pnmt,LOC107571312,LOC107676565 other downstream 2125506 6051168 ~ 6078068 (-)
G85930 LOC107711793,LOC107755027 other downstream 2191463 5990913 ~ 6012111 (-)
cpped1 cpped1,LOC107584109,LOC107669238,LOC107554009 other upstream 128684 8334404 ~ 8359992 (-)
LOC122355061 tnfrsf17,LOC107554040,LOC107692075,LOC107690067,LOC107584106,LOC107734209 other upstream 305683 8511403 ~ 8513265 (-)
G86783 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 other upstream 404832 8610552 ~ 8612445 (-)
plbd1b LOC107578697 other upstream 476723 8682443 ~ 8687548 (-)
trnar-ccu_66 NA other upstream 481778 8687498 ~ 8687570 (-)

Expression


Co-expression Network