XLOC_006652 (kcnq5a)


Basic Information

Item Value
gene id XLOC_006652
gene name kcnq5a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 27378857 ~ 27621246 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012841
tgtaatgtaatataccatttaatttaattcttttttattattgttgtcaggATAATGAAGTTCCATGTGGCCAAAAAGAAGTTTAAGGAGACACTGCGGCCGTATGATGTGAAAGATGTGATCGAGCAATACTCCGCTGGACACCTAGATATGTTATGTCGTATCAAGAGTCTGCAGACTAGGGTGGATCAGATACTGGGCAAGGGCCAGATTTCAGTGGACAGAAAAGGCAGAGAGAAAATCCTCCCAGAAGGAGAGTCTCTGGAGCATGACATGAGCATGCTTGGCCGCGTCTGTAAAGTAGAGAGACAAGTCCAGTCCATAGAGTCAAAGTTGGACTCATTGCTGGATATATACCGGCAGGTGTTGCAGAAAGGCTCCTCTTCGATGCTCGGGTTGTCTGCTTTGCCACTATTTGAGCTGGATCAGACCTCCGACTACCAAAGTTCCCTCCATAGCAAGGAATCTTCCTCCCAGCTCACCGGTAGTGGAGTGTCTCGTTCCTGCAGCAGTAACCTGCACCGCGGTCTTCATCTTGCTTTGGCCCCTAGTGAACTCAACTTGGGTACCGGTTACCCACATTCAGCCTCCTCTTTCTCACCTTCCCCTCTCCTCAACAACCAACCTTCCAGTCCAGACAGTTTCTACCCATCATCCCCTCCTCCAATTCTCACCCCCAACAACCTCTCCAGAAGCCACCAGCGGTTTAGTGAGTTAACCAGGCCTGTCCCAACAGTCCATTCAACCTCAACAACCCTTCAGCTCCCGCCAATGGTACCAGCGCCTCCAGGTCGGCCTACCAGCCTCATCCCAGAGACTCTACAGGAGAGCCGGGCTGAGTGTCCGACAAATTGCCTGCTGGGGACCCAAAACGAGGTTGAGTCAGACAAGGAGGCTGAGAGTATTCCAAGCACGGTACAGCTTCGGGACAAGCCTGAGCGCAACTCCAAGGAAGATGGGTCCTGGAGAAGACATTTGAGCCTTGACATTGATCCACTGATGCTCATGTCTTCCACAGCAGCTGCTTCGCTACAGGTCGAGCGTGGACTCGGTAAGTCTCTTTCAGCTCAGAACCTCATGCTACCAACTGCTGCTGACTGCCACCCTGCATTGTCCACTCGGAGCAGCGGCAGCAGCAACAATGAGTCCAGCGACCGCGAGCCGCTGACCGACTGGGGCGAAACGGAACTCTTTATCAGTGACAAAGAGATGGACTTCCTCCACCAACAGAGCAACGACACCAACTTCTCTTCTGAGCTGCTACGGACAGGGGCCAGCGGGACGTCTCCCAGTCAGGCTGGACCAAGAGATGTTCTCGAGTCCCATAACTTGCCTCACGTATGCCTCGAATAA
>TCONS_00012842
ATGCCCCGCAACCACAGCGGCGATGAGGGCGGTGCTGGTCTCTGGATGAAGACCTCGCAGCACTATGGCATGAAAGATGTTGAAGCCGGTCGCGGGACGATGAACAACGCGACCAGGAATGCCGACAGTCTACTGTCGGCGCCGGGTACAACAGGTGCAGGAGGCTCCGAGAACCAGAGGAGAAATCAGGGCGCCCGTCTAAGCCTGCTGGGGAAGCCGCTCGCATACAGCGCGCAGAGCGGCCGGAGAAACGCGCGCTACAGGAAGCTCCAGAACTACCTCTACAATGTCCTGGAGCGACCGCGAGCCTGGGCATTCGTTTACCATGCCTTTGTGTTCACATTGGTCTTTGGCTGTCTGGTTCTGTCTGTGTTCTCCACCATCCCGGCTCACATGGACCTCTCCAATCACTGTCTCCTAATACTGGAGTTTGTGATGATTGTTGTGTTTGGTCTGGAGTACATCATCCGCATCTGGTCTGCTGGATGCTGCTGCCGGTACAGGGGATGGCAAGGACGACTGCGCTTCGCTAGAAAACCATTCTGTGTGATAGACATTATTGTGCTCATAGCATCCATCGCAGTGGTTTCAGCTGGTAGCCAGGGCAATATTTTTGCCACGTCTGCACTTCGCAGTCTGCGTTTTTTGCAGATTCTGCGCATGGTGCGCATGGACCGGCGAGGCGGTACCTGGAAACTGCTTGGATCTGTAGTCTACGCTCACAGCAAGGAGCTTGTGACTGCCTGGTACATTGGCTTCTTGGTCCTGATCTTTTCTTCATTCTTGGTCTACTTGGTGGAGAAAGAATTTAACAAACAGTTTGCCACCTATGCTGATGCCCTCTGGTGGGGTACGATTACCCTCACAACCATTGGATACGGGGATAAGACTCCACAGACCTGGACCGGACGACTTCTTTCCGCAGGGTTTGCTTTGTTGGGCATCTCGTTCTTCGCTTTGCCTGCTGGTATTCTCGGCTCTGGCTTTGCTCTGAAGGTCCAAGAGCAGCACAGACAGAAGCACTTTGAAAAGAGGCGAAACCCAGCCGCCAGTCTCATACAGTGTGTGTGGCGTAGCTATGCGGCTGATGAGAACTCGGTTTCCATTGCTACCTGGAAGCCTCATTTGAAGGCGTTGCATACCTGCAGCCCTACAAATCAAAAGTTAAGTTTCCGTGAGCGAGTGCGCATGGCCAGCCCGCGTGGTCAGAGTGTAAAGAGCAGACAGATGTCTGTTAACGACCGGCGCTCTCCTGGCACAGAGGTGGCAGTGGAGGGCAGCAGTCCAGCCAAGGTCCAGAAGAGCTGGAGCTTCAATGACCGAACACGCTTTCGACCGTCGCTCAGGCTCAAGAGCCAGTCACGCACAACGACTGAAgCTGACACCACTCTTGGACCGGATGATGCTTTTGATGATAAGGCTTGCCACTGTGATGTGACAGTAGAAGATCTGTCAGCTCCGCTAAAGGCAGTGATCAGGGCCATCAGgATAATGAAGTTCCATGTGGCCAAAAAGAAGTTTAAGGAGACACTGCGGCCGTATGATGTGAAAGATGTGATCGAGCAATACTCCGCTGGACACCTAGATATGTTATGTCGTATCAAGAGTCTGCAGACTAGGGTGGATCAGATACTGGGCAAGGGCCAGATTTCAGTGGACAGAAAAGGCAGAGAGAAAATCCTCCCAGAAGGAGAGTCTCTGGAGCATGACATGAGCATGCTTGGCCGCGTCTGTAAAGTAGAGAGACAAGTCCAGTCCATAGAGTCAAAGTTGGACTCATTGCTGGATATATACCGGCAGGTGTTGCAGAAAGGCTCCTCTTCGATGCTCGGGTTGTCTGCTTTGCCACTATTTGAGCTGGATCAGACCTCCGACTACCAAAGTTCCCTCCATAGCAAGGAATCTTCCTCCCAGCTCACCGGTAGTGGAGTGTCTCGTTCCTGCAGCAGTAACCTGCACCGCGGTCTTCATCTTGCTTTGGCCCCTAGTGAACTCAACTTGGGTACCGGTTACCCACATTCAGCCTCCTCTTTCTCACCTTCCCCTCTCCTCAACAACCAACCTTCCAGTCCAGACAGTTTCTACCCATCATCCCCTCCTCCAATTCTCACCCCCAACAACCTCTCCAGAAGCCACCAGCGGTTTAGTGAGTTAACCAGGCCTGTCCCAACAGTCCATTCAACCTCAACAACCCTTCAGCTCCCGCCAATGGTACCAGCGCCTCCAGGTCGGCCTACCAGCCTCATCCCAGAGACTCTACAGGAGAGCCGGGCTGAGTGTCCGACAAATTGCCTGCTGGGGACCCAAAACGAGGTTGAGTCAGACAAGGAGGCTGAGAGTATTCCAAGCACGGTACAGCTTCGGGACAAGCCTGAGCGCAACTCCAAGGAAGATGGGTCCTGGAGAAGACATTTGAGCCTTGACATTGATCCACTGATGCTCATGTCTTCCACAGCAGCTGCTTCGCTACAGGTCGAGCGTGGACTCGGTAAGTCTCTTTCAGCTCAGAACCTCATGCTACCAACTGCTGCTGACTGCCACCCTGCATTGTCCACTCGGAGCAGCGGCAGCAGCAACAATGAGTCCAGCGACCGCGAGCCGCTGACCGACTGGGGCGAAACGGAACTCTTTATCAGTGACAAAGAGATGGACTTCCTCCACCAACAGAGCAACGACACCAACTTCTCTTCTGAGCTGCTACGGACAGGGGCCAGCGGGACGTCTCCCAGTCAGGCTGGACCAAGAGATGTTCTCGAGTCCCATAACTTGCCTCACGTATGCCTCGAATAA
>TCONS_00012843
agcacacacacaaaaacacagagagagagagagaaagagagagagagagagagagagagagagagagagagagaaagagaaagagagagagagagagtttaatgTCGGGTGATGCCCTCCCCTTGCTAAATCTCCACTGAGATGGTGACGCTCCTTCAAAACTCCAATCTCACGGCGGCGGGTGCAGATAGCTTGAGTCATCTGAGGGGTCATAACTTTACCAATGCTTTCATAGCTGATCTGCAAATGAGCTTGATGCCTGCACTTGTCAGTAGGTGATCCTGTTATTTACATGTAATgctaaagaaaaaagaagaacaaTAAAACACTCAATGTTTTTACACAGGGAACTGTGAATCTCGTGTACAGCTTCTTTGTATGTGCGCACCGCTGGTGCCAGACGCGCGTTTCCAGCCTGCGCTGGTGATGCGATGCCCCGCAACCACAGCGGCGATGAGGGCGGTGCTGGTCTCTGGATGAAGACCTCGCAGCACTATGGCATGAAAGATGTTGAAGCCGGTCGCGGGACGATGAACAACGCGACCAGGAATGCCGACAGTCTACTGTCGGCGCCGGGTACAACAGGTGCAGGAGGCTCCGAGAACCAGAGGAGAAATCAGGGCGCCCGTCTAAGCCTGCTGGGGAAGCCGCTCGCATACAGCGCGCAGAGCGGCCGGAGAAACGCGCGCTACAGGAAGCTCCAGAACTACCTCTACAATGTCCTGGAGCGACCGCGAGCCTGGGCATTCGTTTACCATGCCTTTGTGTTCACATTGGTCTTTGGCTGTCTGGTTCTGTCTGTGTTCTCCACCATCCCGGCTCACATGGACCTCTCCAATCACTGTCTCCTAATACTGGAGTTTGTGATGATTGTTGTGTTTGGTCTGGAGTACATCATCCGCATCTGGTCTGCTGGATGCTGCTGCCGGTACAGGGGATGGCAAGGACGACTGCGCTTCGCTAGAAAACCATTCTGTGTGATAGACATTATTGTGCTCATAGCATCCATCGCAGTGGTTTCAGCTGGTAGCCAGGGCAATATTTTTGCCACGTCTGCACTTCGCAGTCTGCGTTTTTTGCAGATTCTGCGCATGGTGCGCATGGACCGGCGAGGCGGTACCTGGAAACTGCTTGGATCTGTAGTCTACGCTCACAGCAAGGAGCTTGTGACTGCCTGGTACATTGGCTTCTTGGTCCTGATCTTTTCTTCATTCTTGGTCTACTTGGTGGAGAAAGAATTTAACAAACAGTTTGCCACCTATGCTGATGCCCTCTGGTGGGGTACGATTACCCTCACAACCATTGGATACGGGGATAAGACTCCACAGACCTGGACCGGACGACTTCTTTCCGCAGGGTTTGCTTTGTTGGGCATCTCGTTCTTCGCTTTGCCTGCTGGTATTCTCGGCTCTGGCTTTGCTCTGAAGGTCCAAGAGCAGCACAGACAGAAGCACTTTGAAAAGAGGCGAAACCCAGCCGCCAGTCTCATACAGGCTGCGTGGCGTCTCTACTCCACAGACCTGTCCAGATCATACCTGAGTGCCACATGGCTGTTCTATAAAAGTGTTCTCCCTCCTCAAAGGAAAGACCAGGGGGAATCCATCAGCAGTCAAAAGTTAAGTTTCCGTGAGCGAGTGCGCATGGCCAGCCCGCGTGGTCAGAGTGTAAAGAGCAGACAGATGTCTGTTAACGACCGGCGCTCTCCTGGCACAGAGGTGGCAGTGGAGGGCAGCAGTCCAGCCAAGGTCCAGAAGAGCTGGAGCTTCAATGACCGAACACGCTTTCGACCGTCGCTCAGGCTCAAGAGCCAGTCACGCACAACGACTGAAgCTGACACCACTCTTGGACCGGATGATGCTTTTGATGATAAGGCTTGCCACTGTGATGTGACAGTAGAAGATCTGTCAGCTCCGCTAAAGGCAGTGATCAGGGCCATCAGgATAATGAAGTTCCATGTGGCCAAAAAGAAGTTTAAGGAGACACTGCGGCCGTATGATGTGAAAGATGTGATCGAGCAATACTCCGCTGGACACCTAGATATGTTATGTCGTATCAAGAGTCTGCAGACTAGGTTGGACACCATTGTGGGTCCACAGACCCTGAGCAGCAAAGCCAAGACATTTTCCTCTCCTTCCCTCCACTTGTATTACAGCCAGGCCAAGAGGAAACACTCTGCCCCAGGGGTGGATCAGATACTGGGCAAGGGCCAGATTTCAGTGGACAGAAAAGGCAGAGAGAAAATCCTCCCAGAAGGAGAGTCTCTGGAGCATGACATGAGCATGCTTGGCCGCGTCTGTAAAGTAGAGAGACAAGTCCAGTCCATAGAGTCAAAGTTGGACTCATTGCTGGATATATACCGGCAGGTGTTGCAGAAAGGCTCCTCTTCGATGCTCGGGTTGTCTGCTTTGCCACTATTTGAGCTGGATCAGACCTCCGACTACCAAAGTTCCCTCCATAGCAAGGAATCTTCCTCCCAGCTCACCGGTAGTGGAGTGTCTCGTTCCTGCAGCAGTAACCTGCACCGCGGTCTTCATCTTGCTTTGGCCCCTAGTGAACTCAACTTGGGTACCGGTTACCCACATTCAGCCTCCTCTTTCTCACCTTCCCCTCTCCTCAACAACCAACCTTCCAGTCCAGACAGTTTCTACCCATCATCCCCTCCTCCAATTCTCACCCCCAACAACCTCTCCAGAAGCCACCAGCGGTTTAGTGAGTTAACCAGGCCTGTCCCAACAGTCCATTCAACCTCAACAACCCTTCAGCTCCCGCCAATGGTACCAGCGCCTCCAGGTCGGCCTACCAGCCTCATCCCAGAGACTCTACAGGAGAGCCGGGCTGAGTGTCCGACAAATTGCCTGCTGGGGACCCAAAACGAGGTTGAGTCAGACAAGGAGGCTGAGAGTATTCCAAGCACGGTACAGCTTCGGGACAAGCCTGAGCGCAACTCCAAGGAAGATGGGTCCTGGAGAAGACATTTGAGCCTTGACATTGATCCACTGATGCTCATGTCTTCCACAGCAGCTGCTTCGCTACAGGTCGAGCGTGGACTCGGTAAGTCTCTTTCAGCTCAGAACCTCATGCTACCAACTGCTGCTGACTGCCACCCTGCATTGTCCACTCGGAGCAGCGGCAGCAGCAACAATGAGTCCAGCGACCGCGAGCCGCTGACCGACTGGGGCGAAACGGAACTCTTTATCAGTGACAAAGAGATGGACTTCCTCCACCAACAGAGCAACGACACCAACTTCTCTTCTGAGCTGCTACGGACAGGGGCCAGCGGGACGTCTCCCAGTCAGGCTGGACCAAGAGATGTTCTCGAGTCCCATAACTTGCCTCACGTATGCCTCGAATAA
>TCONS_00012844
ACTGAACTCAGCCATGGGTCCACATCAGACACTCAGCACCAAAGCCAGGAACCTTTCCTCTCCTTCTCTACACTTGTATTACAGCCAGAGCAAGAAGAAACACGCTGGGGTGGATCAGATACTGGGCAAGGGCCAGATTTCAGTGGACAGAAAAGGCAGAGAGAAAATCCTCCCAGAAGGAGAGTCTCTGGAGCATGACATGAGCATGCTTGGCCGCGTCTGTAAAGTAGAGAGACAAGTCCAGTCCATAGAGTCAAAGTTGGACTCATTGCTGGATATATACCGGCAGGTGTTGCAGAAAGGCTCCTCTTCGATGCTCGGGTTGTCTGCTTTGCCACTATTTGAGCTGGATCAGACCTCCGACTACCAAAGTTCCCTCCATAGCAAGGAATCTTCCTCCCAGCTCACCGGTAGTGGAGTGTCTCGTTCCTGCAGCAGTAACCTGCACCGCGGTCTTCATCTTGCTTTGGCCCCTAGTGAACTCAACTTGGGTACCGGTTACCCACATTCAGCCTCCT

Function

symbol description
kcnq5a Predicted to enable calmodulin binding activity and delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within potassium ion transport; regulation of ion transmembrane transport; and transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be integral component of membrane. Is expressed in central nervous system; cerebellum; optic tectum; preoptic area; and telencephalon. Human ortholog(s) of this gene implicated in autosomal dominant mental retardation 46. Orthologous to human KCNQ5 (potassium voltage-gated channel subfamily Q member 5).

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005249 voltage-gated potassium channel activity molecular_function
GO:0005251 delayed rectifier potassium channel activity molecular_function
GO:0005267 potassium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-185 Predicted to enable calmodulin binding activity and delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within potassium ion transport; regulation of ion transmembrane transport; and transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be integral component of membrane. Is expressed in central nervous system; cerebellum; optic tectum; preoptic area; and telencephalon. Human ortholog(s) of this gene implicated in autosomal dominant mental retardation 46. Orthologous to human KCNQ5 (potassium voltage-gated channel subfamily Q member 5).

Ensembl:

ensembl_id ENSDARG00000069954

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012841 False 1353 mRNA 0.52 3 27378857 27388097
TCONS_00012842 False 2790 mRNA 0.54 13 27378857 27620815
TCONS_00012843 False 3353 mRNA 0.53 15 27378857 27621246
TCONS_00012844 True 518 mRNA 0.52 3 27379618 27384697

Neighbor

gene id symbol gene type direction distance location
XLOC_006651 ddx43 coding downstream 24824 27332656 ~ 27354033 (-)
XLOC_006650 NA coding downstream 101148 27271338 ~ 27277709 (-)
XLOC_006649 NA coding downstream 151107 27227361 ~ 27227750 (-)
XLOC_006648 ccdc85a coding downstream 340450 27000394 ~ 27038407 (-)
XLOC_006647 vrk2 coding downstream 579613 26780004 ~ 26799244 (-)
XLOC_006653 rims1a coding upstream 10680 27631926 ~ 27767443 (-)
XLOC_006654 CR356236.2 coding upstream 68914 27690160 ~ 27690276 (-)
XLOC_006655 NA coding upstream 180169 27801415 ~ 27816641 (-)
XLOC_006656 ogfrl1 coding upstream 279200 27900446 ~ 27916565 (-)
XLOC_006657 smap1 coding upstream 388481 28009727 ~ 28263868 (-)
XLOC_006471 BX537274.2 misc downstream 17113952 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 26552632 825904 ~ 826225 (-)
XLOC_006644 NA non-coding downstream 675053 26009497 ~ 26703804 (-)
XLOC_006658 CR392046.1 non-coding upstream 558188 28179434 ~ 28179550 (-)
XLOC_006661 BX950184.1 non-coding upstream 655652 28276898 ~ 28417158 (-)
XLOC_006663 NA non-coding upstream 806231 28427477 ~ 28444818 (-)

Expression


Co-expression Network