sncgb (LOC108430421,LOC107550059,LOC107700127)


Basic Information

Item Value
gene id sncgb
gene name LOC108430421,LOC107550059,LOC107700127
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11324401 ~ 11331793 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254472.1
AGCAGGTTCTGTCTCTCTGCATCCTGTTCTCTTGCGCCTGCTCGTcgttctctctccctctctctccctctctctctctctctctctctctctcacacacactctctctctctctcattccacTGCTCTCCGTCCAAAGTGTCCGTGCATCCGTCTGTCCCGGCACAGAATCTCTCTGTATTCCTCTCTCCTGTCATCTGAAACTTTCAGCATATAGACAGACACCCTCAGCCCTCGCAAATTCTGCCAGGCCCAGTCCGTCTGCAGAGCACCGTCGTCAAACTCAACGTCCAGGATGGATGTTCTAATGAAAGGATTCTCCATGGCCAAGGAAGGAGTGGTGGCCGCGGCTGAGAAAACCAAAGCTGGAGTTGAAGAGGCAGCTCTCAGGACCAAAGAAGGGGTCATGTATGTGGGTAACAAGACAAAGGAGGGAGTGGTGTCAGGCGTAAACACAGTTGCCCAGAGGACCACCGACCAGGCGAATATTGTCGGCGAAACAGCGGTAGGCAGCGCTAATGAAGTCGGACAGAAGACGGTAGAGGGGCTGGAGAACGTGGCTGCATCAACCGGCATGGTCAACCCGGATGAGGCTTTATACGAGGGTGACTTCTCTCACGGGGGCATGGAAGGAGGAGACGGTGGGGAGGGTTATTAGTCCAGAGGCCCGAAGCTGAAACGGTCCCCTCTCTTCCCTCTGACTCTCCACCTCTGAGTTTCTGCTCCAAAGCCTCACCCCTTCCAGACTCCAGATGTTactgatatttttttgtgaCTGTATGGAAAACCAGAGTTGAAAAAGACTTTCCCTGAGCCCTGTAGCCGTTAGATGTGTGACGCTTCCCCTCCTTCTCCATCTGTGGTGTCGTCATGCTGTTCTCTAGTGTTACTGTCATTCCTCGTTCCATCCACACCtcatctaaaacacacacaaactcatacatatacaaaaaaaaaagaagcccaGAGGCTGATATCAGAGGTTGAGGTGGTCTTTTAGGAGCATggctggaaaaaaagaaacccgCATGATCAGTAATGTAAGAAAAGCAATACATCTCATTTCATCAGGGCATGTAGCAAAGTGCGTCTGGATCTTTGTGAGATCGTAGCCatgtttcaatttatttagTCTTGAAAATGCTGCAATGTACGCAACGACAAGTTGTCTGTACATTAAGAGATACATTACATTCCTTTAGTTCGGTGTGTGTGCTGAATAGAGTTACTGTGTGCTTGACCAATAGACTTATCGTGTGATTTGTTAGAGTAAGaacaaatatgtttattcaCAAAACGTgaacacatactgtatacatagatactgtaaaacaacaaaaaaataacgaCTATCCGTATTGATGTAGCTGTGCTAGACTCGCATTTCTTCATTAGCTTAAACACGAGATTTGGTTCCAGTCGGGACAAGGAGTCTTCTGATGTTATAGGAAGAGATCAAATCTTCAAACACGTTCCTGTTTTGTCCTAGTTTTGTTGCGATGCATGTGAAGTCGGTGTGCGATCATGAATTTGTGATGCCCGCAATGTAAAAGCAATACTACAGCACCATTGCAAAGTTTGTCATTGGTCTGTTCTGTAGCACTGTGCTATGCTGATTCTAGGCACTGTGTTTTACCGAGGGAATGCTAAGAAGAGTAGATCTGACTGTCTTCATTCTCATTTAGCCTTGCCATCATGGCCGCCCAAACCCCATCCCCGTCCTGTCACTCAGCGGTGTGTTCAGATCCACCCCGGGCTTGTGTCTGCTGTAGGTAACTAGGACAAAGCTATCAAACATCGCAGTTTGTTCTTTCTTTGAAGccacaaaaaaactgaagactGCATGTTGCCTTATCAGCACTCCTGTattcacttacacacacatacagacacgcacatgcacacaaagctgatcaaaacacaaaaacacactcttctcgagcttttttttcttgagcttttctctctttgccctctctgacacacacacacacacacacacacacacacacacacacaaacaaatgtcCCACATACGTTTTATGTTGGCATCAAAGCAGGCAAGCTGATTTTATAAACTGTATAAGTGAAATAAAGAGTTTTGTTGAAATCTA
>XM_043254473.1
TCTGTCTCTCTGCATCCTGTTCTCTTGCGCCTGCTCGTcgttctctctccctctctctccctctctctctctctctctctctctctcacacacactctctctctctctcattccacTGCTCTCCGTCCAAAGTGTCCGTGCATCCGTCTGTCCCGGCACAGAATCTCTCTGTATTCCTCTCTCCTGTCATCTGAAACTTTCAGCATATAGACAGACACCCTCAGCCCTCGCAAATTCTGCCAGGCCCAGTCCGTCTGCAGAGCACCGTCGTCAAACTCAACGTCCAGGATGGATGTTCTAATGAAAGGATTCTCCATGGCCAAGGAAGGAGTGGTGGCCGCGGCTGAGAAAACCAAAGCTGGAGTTGAAGAGGCAGCTCTCAGGACCAAAGAAGGGGTCATGTATGTGGGTAACAAGACAAAGGAGGGAGTGGTGTCAGGCGTAAACACAGTTGCCCAGAGGACCACCGACCAGGCGAATATTGTCGGCGAAACAGCGGTAGGCAGCGCTAATGAAGTCGGACAGAAGACGGTAGAGGGGCTGGAGAACGTGGCTGCATCAACCGGCATGGTCAACCCGGGTGACTTCTCTCACGGGGGCATGGAAGGAGGAGACGGTGGGGAGGGTTATTAGTCCAGAGGCCCGAAGCTGAAACGGTCCCCTCTCTTCCCTCTGACTCTCCACCTCTGAGTTTCTGCTCCAAAGCCTCACCCCTTCCAGACTCCAGATGTTactgatatttttttgtgaCTGTATGGAAAACCAGAGTTGAAAAAGACTTTCCCTGAGCCCTGTAGCCGTTAGATGTGTGACGCTTCCCCTCCTTCTCCATCTGTGGTGTCGTCATGCTGTTCTCTAGTGTTACTGTCATTCCTCGTTCCATCCACACCtcatctaaaacacacacaaactcatacatatacaaaaaaaaaagaagcccaGAGGCTGATATCAGAGGTTGAGGTGGTCTTTTAGGAGCATggctggaaaaaaagaaacccgCATGATCAGTAATGTAAGAAAAGCAATACATCTCATTTCATCAGGGCATGTAGCAAAGTGCGTCTGGATCTTTGTGAGATCGTAGCCatgtttcaatttatttagTCTTGAAAATGCTGCAATGTACGCAACGACAAGTTGTCTGTACATTAAGAGATACATTACATTCCTTTAGTTCGGTGTGTGTGCTGAATAGAGTTACTGTGTGCTTGACCAATAGACTTATCGTGTGATTTGTTAGAGTAAGaacaaatatgtttattcaCAAAACGTgaacacatactgtatacatagatactgtaaaacaacaaaaaaataacgaCTATCCGTATTGATGTAGCTGTGCTAGACTCGCATTTCTTCATTAGCTTAAACACGAGATTTGGTTCCAGTCGGGACAAGGAGTCTTCTGATGTTATAGGAAGAGATCAAATCTTCAAACACGTTCCTGTTTTGTCCTAGTTTTGTTGCGATGCATGTGAAGTCGGTGTGCGATCATGAATTTGTGATGCCCGCAATGTAAAAGCAATACTACAGCACCATTGCAAAGTTTGTCATTGGTCTGTTCTGTAGCACTGTGCTATGCTGATTCTAGGCACTGTGTTTTACCGAGGGAATGCTAAGAAGAGTAGATCTGACTGTCTTCATTCTCATTTAGCCTTGCCATCATGGCCGCCCAAACCCCATCCCCGTCCTGTCACTCAGCGGTGTGTTCAGATCCACCCCGGGCTTGTGTCTGCTGTAGGTAACTAGGACAAAGCTATCAAACATCGCAGTTTGTTCTTTCTTTGAAGccacaaaaaaactgaagactGCATGTTGCCTTATCAGCACTCCTGTattcacttacacacacatacagacacgcacatgcacacaaagctgatcaaaacacaaaaacacactcttctcgagcttttttttcttgagcttttctctctttgccctctctgacacacacacacacacacacacacacacacacacacacaaacaaatgtcCCACATACGTTTTATGTTGGCATCAAAGCAGGCAAGCTGATTTTATAAACTGTATAAGTGAAATAAAGAGTTTTGTTGAAATCTA

Function

NR:

description
PREDICTED: synuclein-like isoform X2

GO:

id name namespace
GO:0071542 dopaminergic neuron differentiation biological_process
GO:0008345 larval locomotory behavior biological_process

KEGG:

id description
K04528 SNCA; alpha-synuclein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254472.1 True 2114 mRNA 0.46 6 11324401 11331793
XM_043254473.1 False 2089 mRNA 0.46 5 11324401 11331786

Neighbor

gene id symbol gene type direction distance location
six2b LOC107749381,LOC107550038,LOC107698797,LOC107582772,LOC107700111,LOC107739330 coding downstream 104849 11217292 ~ 11219552 (-)
zfp36l2 zfp36l2,LOC107698819,LOC107749349,LOC107700120,LOC107550050,LOC107728722,LOC107582775 coding downstream 201563 11119418 ~ 11122838 (-)
hcar1-4 LOC107749353,LOC107698821,LOC107550036,LOC107700109,LOC107582776,LOC107728709 coding downstream 240365 11082205 ~ 11084036 (-)
kcng3 kcng3,LOC107749354,LOC107728707,LOC108273984,LOC107698800,LOC108430560 coding downstream 269595 11049679 ~ 11054806 (-)
rhoq rhoq,LOC107550049,LOC107582780 coding downstream 296971 11012472 ~ 11027430 (-)
bmpr1ab bmpr1a,bmpr1ab,LOC107749344,LOC107698810,LOC107550060,LOC107739296,LOC107582766,LOC108274296 coding upstream 12666 11344459 ~ 11374806 (-)
ldb3b ldb3b,ldb3,LOC107749342,LOC107552745,LOC107739309,LOC108274368,LOC107698793 coding upstream 44002 11375795 ~ 11392390 (-)
opn4b opn4b,LOC107552747,LOC107739286,LOC107582762 coding upstream 62464 11394257 ~ 11420206 (-)
usp54b LOC107698809,LOC107706875,LOC107720824,LOC107582762 coding upstream 108976 11440769 ~ 11528254 (-)
myoz1b myoz1b,LOC107700112,LOC107706866,LOC107727320,LOC107582765,LOC107552748 coding upstream 197258 11529051 ~ 11534953 (-)
G87414 glud1b,LOC107700126,LOC107739271,LOC107582816 non-coding downstream 5480 11316383 ~ 11318921 (-)
G87417 NA non-coding downstream 8403 11312472 ~ 11315998 (-)
G87409 NA non-coding downstream 25867 11259017 ~ 11298534 (-)
G87484 NA non-coding downstream 40815 11278324 ~ 11283586 (-)
G87482 NA non-coding downstream 51099 11271741 ~ 11273302 (-)
LOC122355534 NA non-coding upstream 247395 11579188 ~ 11580359 (-)
G87547 NA non-coding upstream 421256 11753049 ~ 11790926 (-)
G87551 NA non-coding upstream 467212 11799005 ~ 11799343 (-)
G87552 NA non-coding upstream 467799 11799592 ~ 11800481 (-)
G87593 NA non-coding upstream 559141 11890934 ~ 11894512 (-)
G87489 NA other downstream 1798 11321423 ~ 11322603 (-)
LOC122355648 cox7a3,LOC107550034,LOC107582778,LOC107749383,LOC107728726,LOC108429329,LOC108273985,LOC107700119 other downstream 278512 11042888 ~ 11045889 (-)
cript cript,LOC107582781,LOC107728714 other downstream 317447 11005006 ~ 11006954 (-)
thrab thrab,LOC107584392,LOC107733455,LOC107657272,LOC108430158,LOC107665883,LOC107723634 other downstream 1384552 9311653 ~ 9939849 (-)
ormdl3 ormdl3,LOC107723636,LOC107657273,LOC107556587,LOC108273759,LOC102217224,LOC106521946,LOC102783025,LOC105936292,LOC107092838 other downstream 1835089 9481559 ~ 9489312 (-)
G87569 NA other upstream 501086 11832879 ~ 11835612 (-)
G87608 NA other upstream 616747 11948540 ~ 11951155 (-)
prr15lb prr15lb,LOC107754107,LOC107675003,LOC107565730,LOC107743781,LOC107677864,LOC107563795 other upstream 1317590 12649383 ~ 12675472 (-)
G87845 LOC107675011 other upstream 1420111 12751904 ~ 12752678 (-)
LOC122355808 LOC107684141,LOC107702421,LOC107581556,LOC107684142,LOC107708119,LOC107708127 other upstream 2092515 13424308 ~ 13432195 (-)

Expression


Co-expression Network