chadlb (chadl,chadlb)


Basic Information

Item Value
gene id chadlb
gene name chadl,chadlb
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8693412 ~ 8698501 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254477.1
tcttatgaggGACTGATGGCCAGACTGAGAACAGTGCGCGTCTTTGTGTGCCGCAGAGCCGCGGTCTGAAGTCTCATGGGACTCAACGAACATATTTCGCATTCGGAAAATCATTTTCCCCTGCTGCTTCGGTTTCGCTGTCCGTAAGAACTAGGGTTTTAATGGCATGATTTTGTTCTAAACCTTATTTTGTAAGTGTTTTGTTCATGACGGAGCGATTTCTTAGGCTGAACTTCATTTGACGGAGATTATTGAAAACCGTGGGGGAGTCATATATATTTCTTCAGAAGAAAGACCAAAATGTTTAGCCTTCCCACATTGTCGGTTATGATGTTACTTGCCCTGAAGTTCCATACTGTGCAGTCAGGCAAATGCCCAAAGTTCTGCATCTGTGACAACATCCAGCTCACGGTTGCTTGTGTCAACAAGAATCTCACCGAGGTGCCGCCTACCATTGATGAGATAACAGTGAAACTCGACCTGAGAGGAAATGACATGCAGGAGCTTCCTACAGGGGCGTTCACACGCACCCCTTACCTCACCCACCTGTCGCTGCAGAACAGCAACATCCGAAGGGTGCGGGAAGGAGCTTTCCGCAGACTAGGCCGGCTGGTCTTGCTCAATCTGGCCAACAACAAGATTGAGATCCTGTACCAGGAGTCATTTGATGGGCTTTCATCGCTGAAGCAGCTAATTATTGAGCGAAACAGAGTGGAGGAGATCCAGCCTGGAGCTTTTTCACAGCTTGGCCTTCTCAACCTCCTCTCACTCACACATAACCAATTGGTGTTCATACCTAACATGGCGTTTCAGGGTTTGCAGAACATCAAATGGCTACGTCTCAGTCACAACTCTCTCAATTATCTAGCAACAGAAGCATTTGCTGGCCTCTTCACTCTTACACGTTTGAGTCTGGATAACAATGAACTGCAATTTTTTCCCACTGAGACGATGACAAGACTTCCAGAAGTAACTCGTTTAGAGCTCAGCTACAACCCCATGATCTACTTTGGAGAGGAGTCTATATCTATGCCCAAACTCACTCACCTCTTCCTGGATCATAACTCCCTGCAGGATTTTTCAAATGCAGCTATCCTGCTTTCCCCTCGTCTCGTTCATCTGGACCTAAGCCATAACCAGCTGCGAGTCCTGCAGGCAATGGCCCCCGGCTCTCCCAAACTGACTCGCCTCAATCTGGCAGGCAACCCCATCTACTGCAGCTGCTACATGCGGCCTGTGCGTGAGTGGGCGATGCAGGAGCGTGTCCGCTTGGGTGGTACGTGCGGAGGCCCTGCACATCTGTCCGGTGAGAATCTGGAGGCGGTGCTGCCCGTTGATTTGCGCTGTCAGAGCCATGAGGCCATGCTGAAGGCCGAGCTGGAGGAGCTGAGCAGACTGCCCACACTCCCGACAACCCCACCTCCAGATATAGTCAATTGCCCAGCCAACTGTCAGTGTGAGGCTGAGAACAACCACTCATCTTGTGAAAACAAAGGCCTCACCAAGATCCCCCGTGGTTTTTCACCAGACACACGCTTGTTGGACCTGCGAGGCAACCATTTCCACTACATCCCTGCAAATAGTTTTCCAGGCACTGCGGAAGTGGTTTCTCTTCACCTGCAGCGCTGCAAGATCCATGAAGTAGAAGATGGGGCTTTCAGTAGTATGAAGAGTCTGGTCTACCTCTACCTCTCAGAAAATGACCTCACTTCATTGAGTCCTGAGGCATTCAAGGGGTTGTCCCATCTTACTTACCTCCATCTAGAGAAGAATCGTTTCACCCAGTTCCCCAAAGGAGCATTCAAGCTATTGCCTGGTCTGCTGGCTCTGCACATGGAGAATAATGCTATCACTAAACTACAAGCAGGAATACTGACAGGTGCTGAGAAACTGAGGGGCCTCTATCTCACTTCCAATGCCATCACAGCGGTTGCTTCCAGGGCCTTTGATCCTGCACCTGACTTGGATACTCTTCATTTAGGCAGCAACAAACTGAAGGAAGTTCCAAGTGAGGGCCTTTCTAAAGCCAGCAGCCTTGCAGAGCTTAATCTCTCCCGTAACCCTATTCGCTGGATCGGAACTGGGGTTTTTCAACCAGTTGCTGCTACACTTAAGCATCTTTATCTTAACCATATGGGTTTAGAAAAGGTCTCTAAAGATTCACTAGCAGGACTGGGGTCTGGCCTGAGGAGTCTGTTTCTTGAAGGAAACCAACTTGAGGAGCTGCCAGACTTGGGTCTGCTCACAGGACTCGAGGTCATAAACTTGGCAGAGAATCCGCTGTTCTGCGATTGTCCACTGTTGCCTCTTCGCAAGTGGATCGAGCAGGTAAATCTGAAGGTCAGAGCCACCTGTGGCCACCCACCAGAACTCAGAGGTCAAAGGGTCAAAGACGTCCATGTTTTTAAGAGCTGCCCAGGGGAAAAGCCTCCTACTGTTCAGCACGTAAAACAAACCAAGCCCACAAAGACTGAATCTGCTCTAATCAGTCCTCCAAAAGTCATCAAGATAGTCAAGGCCAAAGGCAAACCAAGCAAAAGTGCAAAACCTATTAGAATGCAGAAAAATACCACAAAGAAAAGGAAGTTGGTGTGA

Function

symbol description
chadlb Predicted to be active in extracellular matrix and extracellular space. Orthologous to human CHADL (chondroadherin like).
chadl Enables collagen binding activity and collagen fibril binding activity. Involved in negative regulation of collagen fibril organization. Located in collagen-containing extracellular matrix.

NR:

description
chondroadherin-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254477.1 True 2595 mRNA 0.49 8 8693412 8698501

Neighbor

gene id symbol gene type direction distance location
rangap1b rangap1b,LOC107554056,LOC107709655,LOC107692059,LOC107734248 coding upstream 222 8687911 ~ 8693190 (+)
gucy2cb si:ch73-139e5.4,LOC107734164,LOC107584206,LOC107663179 coding upstream 25023 8654001 ~ 8668389 (+)
csdc2a csdc2a,csdc2,LOC107584207,LOC107731402,LOC107554055,LOC105919973 coding upstream 40632 8650331 ~ 8652780 (+)
aco2 aco2,LOC107734200,LOC107584097,LOC107731401,LOC107554054,LOC107692062,LOC108273913 coding upstream 43498 8640650 ~ 8649914 (+)
tefa LOC107584098,LOC107734194,LOC107663181 coding upstream 59342 8628627 ~ 8634070 (+)
trnaq-cug_20 NA coding downstream 6759 8705260 ~ 8705331 (+)
ep300a LOC107692052,LOC107584175,LOC107709650,LOC107734181 coding downstream 8244 8706745 ~ 8727704 (+)
desi1b desi1b,LOC107734250,LOC107692098,LOC107660862,LOC107584090,LOC107554028 coding downstream 45760 8744261 ~ 8747079 (+)
shisa8b shisa8b,LOC107734242,LOC107584089,LOC107660861,LOC107692051,LOC107709648,LOC107554029 coding downstream 56739 8755240 ~ 8780804 (+)
gna13a gna13a,LOC107660858,LOC107584085,LOC107734232,LOC107554062,LOC107692049 coding downstream 123356 8821857 ~ 8827271 (+)
G86713 LOC107578697 non-coding upstream 7295 8682389 ~ 8686117 (+)
G86593 NA non-coding upstream 348444 8344669 ~ 8344968 (+)
G86577 NA non-coding upstream 401350 8291843 ~ 8292062 (+)
LOC122355856 NA non-coding upstream 486664 8204145 ~ 8206748 (+)
G86536 NA non-coding upstream 489269 8203583 ~ 8204143 (+)
G86756 NA non-coding downstream 174826 8873327 ~ 8873545 (+)
G86758 NA non-coding downstream 176614 8875115 ~ 8875455 (+)
G86943 NA non-coding downstream 783084 9481585 ~ 9487179 (+)
G86959 LOC107657285,LOC107733473,LOC107738963,LOC107665891 non-coding downstream 897792 9596293 ~ 9600682 (+)
LOC122355291 NA non-coding downstream 911792 9610293 ~ 9616636 (+)
hbbe2 hbbe2,LOC107734191,LOC105910203 other upstream 495508 8195964 ~ 8197904 (+)
msrb1b msrb1b,LOC100705913 other upstream 586632 8105148 ~ 8106780 (+)
LOC122355675 NA other upstream 849329 7815823 ~ 7844083 (+)
G86143 NA other upstream 1385183 7307924 ~ 7308229 (+)
G86142 NA other upstream 1388564 7303138 ~ 7304848 (+)
arsg arsg,LOC107734203,LOC107660857,LOC107692046,LOC107554066 other downstream 137947 8836448 ~ 8852449 (+)
pkd1b LOC107723630,LOC107665861,LOC107556563 other downstream 587162 9285663 ~ 9306831 (+)
mfsd8 mfsd8,LOC107738985,LOC107556570 other downstream 958168 9656669 ~ 9664139 (+)
LOC122355274 shisa9a,LOC107584108,LOC107734251,LOC107669237,LOC107554036,LOC107731434,LOC107692077 other downstream 1058746 9757247 ~ 9767228 (+)
LOC122355252 fam20cl,LOC107741571,LOC107664989,LOC107570372,LOC108436593,LOC102782963,LOC108259419 other downstream 1166313 9864814 ~ 9874515 (+)

Expression


Co-expression Network