LOC122355878 (LOC107755407,LOC107566757,LOC107702425,LOC107722184)


Basic Information

Item Value
gene id LOC122355878
gene name LOC107755407,LOC107566757,LOC107702425,LOC107722184
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 13993668 ~ 13997063 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254478.1
GGGACCAGTTGCCAGTCGTCTGCTAACCAGAGGTGGTCTCACACAGAGAGTTGGATATGAgtgttttttctgtctgtgcTATCTGTCTACTTTTTCTAGTAGATTTAGTGTTTCCTAAAAAAGCGTGCAGTAAGCAAGATGTACTGGATTATTTAAATCTTACCAGAGACAATGAAAAATTCACAACATGCCGTCCTGCACTGGACTGGACACACCCCACCATAgtgtattttgatatttatttctACGGCATCCTTTCTATGattgAAAAATCTCAAATCTTTGTACCTCTTTTTTGGATGTCCGTGAGTTGGAACAATGAACGAATCTCTTGGAATCCTAAAGATTTTTGTGGCATTAAAAGTGTGATTTTGCCAAAAGAGATGCTTTGGAAACCAGACCTTTATGTTCATGAGACTGCAGAAAAGGAAGATGGACCACTGAACCCGTATATATATGTTACTCATGATGGAAATGTGAAGATGGAGGATGACCATAAAATTGTCAGCACCTGCACAATGAATGTACACAAATTTCCTTTTGATACCCAAACGTGTCACATCACAGTGTCTTCAATTAATTACTCAGataaagaaataaagctgGTTCCTGCCTCCAATTCCTCAAAGGCGACACAGCTTGCTCGCGAAAGCATATTAACAAAAGGAGAATGGGAGTTCCTCAACATATCCGTCTCGCTCCAAAATGAGAGCTATGAGGACCAAACATTCGACAGGATAAAGTACACGATTTCAGTCAGAAGGTTGCCCCTGATGCATTTCATAAATTTTCAGCTACCTGTATTGTTTTTCCTCGTTTTGGACCTAGCTTCTTTTTTCATACCAGACAGAGGGGACAAACTGTGCTTCAAAGTGACTGTGCTACTGGGAATCTCTGTACTTCTGCTCATCCTAAATGACATTCTGCCATCCAAATCTCACAGATGTCCTCTGATAGCTGTGTACGTCGTTGTCATCTTTTCGTTCATGTTGCTGAGTCTTCTGGAGACCATTTTGGtgatatacttaataaatatgaacTCTGAACAAGACGCTAAGGGGGTTCAGACACCTGAAGATCACATCTCTGACACAGACAACCGGAAAAGACACGTTAATGGAGTTGAACCTCAAATGAATGACACGCAGCTATTGCAGCTGATCCTAGAAGAGCTTCAGAATATCAGACAGAGTCTTGTTACCGATACTTTAAAAGCCAAAACTGCTCAGATTTACTGGTTTGGAACGGTTAAACGTATTAACAGGGTTTTCTTTGTGGTTTATCTCATCTCAGTTTCcctctttcttgtttttatctttCGAGAGTGGAAAGTTGAGTAATTTCAAGCCTTAATACTGTGACAAATGCTCAGATTAGGGACCAATATTACATATATTGCATTACATAACAATATTATGTACATTTCTTCTTGTTGAATGCATTGTTGAATGAGCAGCACcgtatttcatttgattttctgGTAGTTATCTACAGAGATCCTCTCCTGTATGGGCTCAGCCCAACCAAATTaaccactttttttaaaattcataatttaatgtGACGAGTAGCCTACAtcattgattgatttaaattaaaatgaggtAAAAAGAATCACAAGTGTTGAAACCAGAATATGGGCCTTTTTTGCTATTcagcaaacaaaagcaaaatgtttattttatccGAAAAGTCTGCTAGGCTATCCACGGAAGTGCAATTGCTCTTTATTCATTGTAGACTGCTATGCTACTATGGGTGAAAAGACGACTTTTACACAGTAGCGTACATATTAGCATCACTGCCAAtgatcaacattttaaaactgtaaagaaCTGTATGCTCTCTTTGTATATCTTTGTAATactacttaatattttgtgtaataaaGCATGCTTCACAAACTCAA
>XM_043254479.1
GACCAGTTGCCAGTCGTCTGCTAACCAGAGGTGGTCTCACACAGAGAGTTGGATATGAgtgttttttctgtctgtgcTATCTGTCTACTTTTTCTAGTAGattgAAAAATCTCAAATCTTTGTACCTCTTTTTTGGATGTCCGTGAGTTGGAACAATGAACGAATCTCTTGGAATCCTAAAGATTTTTGTGGCATTAAAAGTGTGATTTTGCCAAAAGAGATGCTTTGGAAACCAGACCTTTATGTTCATGAGACTGCAGAAAAGGAAGATGGACCACTGAACCCGTATATATATGTTACTCATGATGGAAATGTGAAGATGGAGGATGACCATAAAATTGTCAGCACCTGCACAATGAATGTACACAAATTTCCTTTTGATACCCAAACGTGTCACATCACAGTGTCTTCAATTAATTACTCAGataaagaaataaagctgGTTCCTGCCTCCAATTCCTCAAAGGCGACACAGCTTGCTCGCGAAAGCATATTAACAAAAGGAGAATGGGAGTTCCTCAACATATCCGTCTCGCTCCAAAATGAGAGCTATGAGGACCAAACATTCGACAGGATAAAGTACACGATTTCAGTCAGAAGGTTGCCCCTGATGCATTTCATAAATTTTCAGCTACCTGTATTGTTTTTCCTCGTTTTGGACCTAGCTTCTTTTTTCATACCAGACAGAGGGGACAAACTGTGCTTCAAAGTGACTGTGCTACTGGGAATCTCTGTACTTCTGCTCATCCTAAATGACATTCTGCCATCCAAATCTCACAGATGTCCTCTGATAGCTGTGTACGTCGTTGTCATCTTTTCGTTCATGTTGCTGAGTCTTCTGGAGACCATTTTGGtgatatacttaataaatatgaacTCTGAACAAGACGCTAAGGGGGTTCAGACACCTGAAGATCACATCTCTGACACAGACAACCGGAAAAGACACGTTAATGGAGTTGAACCTCAAATGAATGACACGCAGCTATTGCAGCTGATCCTAGAAGAGCTTCAGAATATCAGACAGAGTCTTGTTACCGATACTTTAAAAGCCAAAACTGCTCAGATTTACTGGTTTGGAACGGTTAAACGTATTAACAGGGTTTTCTTTGTGGTTTATCTCATCTCAGTTTCcctctttcttgtttttatctttCGAGAGTGGAAAGTTGAGTAATTTCAAGCCTTAATACTGTGACAAATGCTCAGATTAGGGACCAATATTACATATATTGCATTACATAACAATATTATGTACATTTCTTCTTGTTGAATGCATTGTTGAATGAGCAGCACcgtatttcatttgattttctgGTAGTTATCTACAGAGATCCTCTCCTGTATGGGCTCAGCCCAACCAAATTaaccactttttttaaaattcataatttaatgtGACGAGTAGCCTACAtcattgattgatttaaattaaaatgaggtAAAAAGAATCACAAGTGTTGAAACCAGAATATGGGCCTTTTTTGCTATTcagcaaacaaaagcaaaatgtttattttatccGAAAAGTCTGCTAGGCTATCCACGGAAGTGCAATTGCTCTTTATTCATTGTAGACTGCTATGCTACTATGGGTGAAAAGACGACTTTTACACAGTAGCGTACATATTAGCATCACTGCCAAtgatcaacattttaaaactgtaaagaaCTGTATGCTCTCTTTGTATATCTTTGTAATactacttaatattttgtgtaataaaGCATGCTTCACAAACTCAA

Function

NR:

description
PREDICTED: 5-hydroxytryptamine receptor 3A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254478.1 True 1909 mRNA 0.38 9 13993668 13997063
XM_043254479.1 False 1746 mRNA 0.38 8 13993670 13997063

Neighbor

gene id symbol gene type direction distance location
habp2 LOC107684127,LOC107722212,LOC107581633 coding upstream 21018 13968509 ~ 13972650 (+)
LOC122355687 dnmbp,LOC107755522,LOC107702462,LOC107722208,LOC107684043,LOC107566369 coding upstream 26011 13925760 ~ 13967657 (+)
cpn1 cpn1,LOC107722209,LOC107684044,LOC107702463,LOC107755523 coding upstream 70982 13914176 ~ 13922686 (+)
gpam gpam,LOC107702461,LOC107566297,LOC107755524,LOC107581571,LOC107722223 coding upstream 99595 13873018 ~ 13894073 (+)
zdhhc6 zdhhc6,LOC107755527,LOC107684040,LOC107722226,LOC107702458 coding upstream 147579 13839483 ~ 13846089 (+)
lrrc59 lrrc59,LOC107755517,LOC107684048,LOC107722190,LOC107581574 coding downstream 243 13997306 ~ 14000327 (+)
hlfb hlf,LOC107566512,LOC107702475,LOC107581580,LOC107684053,LOC107722239 coding downstream 139602 14136665 ~ 14142072 (+)
ankfn1 ankfn1,LOC107702427,LOC107684130,LOC107722232 coding downstream 186519 14183582 ~ 14215651 (+)
nog3 nog,nog3,LOC107702438,LOC107566874,LOC107722200,LOC107684148,LOC107581671 coding downstream 225881 14222944 ~ 14224109 (+)
rbfox3a LOC107566522,LOC107755508,LOC107684054,LOC107581581,LOC108435270,LOC107702478,LOC108273414 coding downstream 282653 14279716 ~ 14643378 (+)
G88111 NA non-coding upstream 276536 13715584 ~ 13717132 (+)
G88106 NA non-coding upstream 283429 13710004 ~ 13710239 (+)
G88079 NA non-coding upstream 413377 13580078 ~ 13580291 (+)
G88063 NA non-coding upstream 453645 13539789 ~ 13540023 (+)
G88062 NA non-coding upstream 455580 13536166 ~ 13538088 (+)
G88207 LOC107702472,LOC107581578,LOC107566485,LOC107722231,LOC108443562,LOC103039554,LOC107684050 non-coding downstream 31363 14028426 ~ 14090868 (+)
G88238 NA non-coding downstream 145650 14142713 ~ 14218976 (+)
G88270 enpp7.1,LOC107755405,LOC107684149,LOC107722193,LOC107581672,LOC107755509 non-coding downstream 236449 14233512 ~ 14243310 (+)
G88269 enpp7.1,LOC107684149,LOC107722193,LOC107755405,LOC107581672,LOC107702441 non-coding downstream 240350 14237413 ~ 14238303 (+)
LOC122355796 NA non-coding downstream 248289 14245352 ~ 14267029 (+)
rnf157 rnf157,si:dkey-49c17.3,LOC107702467,LOC107755520,LOC107684047,LOC107722211 other upstream 624 13978171 ~ 13993044 (+)
LOC122355339 LOC107702424 other upstream 89041 13894361 ~ 13904627 (+)
gucy2g gucy2g,LOC107702423,LOC107755438,LOC107722192,LOC107581632,LOC107684125,LOC107571103,LOC108273537 other upstream 128925 13855695 ~ 13864743 (+)
G88082 NA other upstream 397320 13595794 ~ 13596348 (+)
G88016 NA other upstream 548753 13441943 ~ 13444915 (+)
stxbp4 stxbp4,LOC107702473,LOC107581670 other downstream 108893 14105956 ~ 14131785 (+)
sfxn2 sfxn2,timp2a,LOC107755483,LOC107722238,LOC107581595,LOC107690949,LOC107565802,LOC107755484,LOC107684079,LOC103024286 other downstream 933016 14930079 ~ 14940191 (+)
si:dkey-21c1.4 LOC107755475,LOC107576597,LOC107690918 other downstream 1310363 15307426 ~ 15312004 (+)
qki2 qki2,LOC108426533,LOC107755469,LOC107690925,LOC107601430,LOC103029551 other downstream 1349482 15346545 ~ 15378101 (+)
LOC122355837 ndst2b,LOC107601424,LOC107755463,LOC107690932,LOC107749844,LOC107684097,LOC107561853,LOC108410510 other downstream 1454431 15451494 ~ 15774014 (+)

Expression


Co-expression Network