ccz1 (ccz1,LOC107584127,LOC107699864,LOC107753422,LOC107669215,LOC107594171)


Basic Information

Item Value
gene id ccz1
gene name ccz1,LOC107584127,LOC107699864,LOC107753422,LOC107669215,LOC107594171
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7816015 ~ 7824303 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254481.1
CCAACTGTAACACACGGGCGACTGTCAAGAGCAGGAAGTACATCTTTTCCATTGATCTCAGCTCTGTTTTTCCCCATGAGATAACAAATCAACCACTTTGTTTCTGTTGTCATGCTGTAACAGATAAAAGGCATGCACACCAAACTCAATGAAAAAAGAGGGAACCGTAGACACAGACCACACTAATGCTGAtgatcagCCCAAGAATGGCATCTGGAATGCAAGAGAAACAGTACACGCCATCTTTGCTCAGTTTTTTCATCTATAACCCCAAGTTTGGACCACGTGAGGGCGAGGAGGAAAAGAAAATCTTGTTTTACCATCCCATTGAAATTGAGAAGAATGAAAAGATTCGTAATGTTGGACTCTGTGAGGCCATCGTTCAGTTCACCAGAACCTTCTGTCCAACAAAACCAGCCAAATCTCTCCACACTCAGAAGAACCGACAGTTTTTCCATGAGCCGGAGGAGAACTACTGGATAGTCATGGTTGTACGGAATCCAATGGTTGAAAAACCCAACAAAGATGGCAAACCACCCACTGTAGAATACCAAGAGGAAGAGATTATTGACTCAGTTTATGGGTCTGTATTACAACAGTGCTACAGCATGTATAAGCTCTTCAACGGCACATTCAGCAGGGCATTTGAGGCTGGTGGAGTGGAACTGCTTACCCAAAAGCTTGAAAAGTTCTTTTACAGgTACCTGCAGACACTTCATCTCCAGTCCTGTGATCTGCTGGACGTCTTCGGGGGAATCAGCTTTTTCCCTCTTGACAAGATGACCTACCTGAAGATCCAGTCTTTTGTCAATAGAGTAGAAGAGAGCCTGAGTCTTGTCAAATACACCGCCTTCCTCTACAACGACCAGCTGATCTGGAGTGGTCTAGAGCAGGATGACATGCGAATCCTGTACAAATACCTGACGACCTCACTGTTCCCGCGGCACACTGAACCAGAGCTTGCAGGAAGAGACTCTCCGCTCAGGCCAGAGGTGGCTGGGAATCTGTTGCACTACGGAAGATTTTTAACAGGACCGGCAAATCTTAAAGATCCAGATGCAAAATTCAGATTTCCCAGGATATTTGTGAACACAGAGGACAGTTACGAGGAGCTACATTTGATTGTTTACAAGGCAATGAGTGCAGCTGTATGCTTCATGGTAAATGCGGCAGTGGAGTTGAATCGAGAGTTTTGTGAACAACTAGACAGCCTGGTTGGTCCCCAGCTCACCCTGTTGGCCTCAGACATATGCGAGCAGTACAACATTAACCGAAGAATATCAGGGCCAGAGAAGGAACCTCAGTTTAAGTTCATCTACTTTAACCACATGAATTTGGCTGAGAAAAGCACCATTCATATGCGCAAGACGGCCAGCGTGTCCCTCACCTCTGTCCATCCGGACCTCATGAAAATCCTTGGAGACATCAACTGCGATTTTGCACGGGTTGATGAGGACGAGGAAATCATTGTTAAAGCGATGACCGATTACTGGGTTGTTGGAAAGAAGTCTGATCAGAGGGAACTCTATGTCATTTTGAACCAGAAGAATGCCAACCTCATTGAAGTGAATGAGGAAGTGAAAAGGCTGTGCGCGACAcaattcaataatatttttttcttggacTGAAGAGAGATGATGGGCATGGACTACTTCACTACACTAAAACTGTCAACTGTTCAGGTTTTACTGACAGCATCAGTGTAATGCAAtaattgcattgtaaaaaaaaaaaaagaaaaaagatttttcacaTCATGcaattttttagatttttatttaatctatacAAAAATGTGGTTGCTTCcttgtaattaattataaaatcagaattttactgtaattacctcttttcatttgtttgtatgtaCATATCATGTTTACGTATCTATCAGCTAAAGTCGCTTTTGTGTTTCATTCCCATTGTTCAGATTTCTTTTATCACGTACTGACTCAATTAAGTTGACGTTTATAATATAAATCTGTCAAGCtatattttctcttattttaaatgctgtcGTGTCATCAGTATCGTGGTTTAACAtacattatttcacaataaatttcagttttcattaaa

Function

symbol description
ccz1 Predicted to be involved in vesicle-mediated transport. Predicted to be located in lysosomal membrane. Predicted to be part of Mon1-Ccz1 complex. Predicted to be active in intracellular membrane-bounded organelle. Orthologous to several human genes including CCZ1 (CCZ1 homolog, vacuolar protein trafficking and biogenesis associated).

NR:

description
vacuolar fusion protein CCZ1 homolog isoform X1

GO:

id name namespace
GO:0005765 lysosomal membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254481.1 True 2079 mRNA 0.42 17 7816015 7824303

Neighbor

gene id symbol gene type direction distance location
dlgap5 LOC107669214,LOC107584128,LOC107699863 coding downstream 676 7807662 ~ 7815339 (-)
eif2ak1 eif2ak1,LOC107753420 coding downstream 20249 7789587 ~ 7795766 (-)
usp42 usp42,LOC107753425,LOC107669212,LOC107724691,LOC107584191 coding downstream 26619 7778296 ~ 7789396 (-)
minpp1b minpp1b,LOC107669175,LOC107753454,LOC107753455 coding downstream 55498 7754857 ~ 7760517 (-)
papss2b papss2b,papss2,LOC107680272,LOC107753426,LOC107724695,LOC107584134,LOC107594166,LOC107669161 coding downstream 61284 7747592 ~ 7754731 (-)
pvalb9 pvalb9,LOC107584233,LOC107724701,LOC107594175,LOC107753418,LOC107699867,LOC108431967 coding upstream 2299 7826602 ~ 7828985 (-)
pvalb3 pvalb3,LOC107724689,LOC107669170,LOC107753416,LOC107594172 coding upstream 7093 7831396 ~ 7833152 (-)
LOC122355674 pvalb2,LOC103030463,LOC107669167,LOC107753417,LOC107594174,LOC107724690,LOC107584231 coding upstream 11128 7835431 ~ 7837139 (-)
LOC122355671 LOC107669169,LOC107753419,LOC107584230,LOC107699851,LOC107724694,LOC108432015,LOC108273555,LOC105910193 coding upstream 13789 7838092 ~ 7839471 (-)
tecpr1a tecpr1,tecpr1a,LOC107584126,LOC107753445,LOC107594176 coding upstream 29316 7853619 ~ 7868360 (-)
G86357 NA non-coding downstream 107821 7707860 ~ 7708194 (-)
G86356 NA non-coding downstream 110532 7705221 ~ 7705483 (-)
G86354 NA non-coding downstream 117001 7698665 ~ 7699014 (-)
G86333 acta2,zgc:86709,actc1a,actc1,ACTC1,LOC107594158,LOC103374497,LOC108414322,LOC106531354,LOC107683715 non-coding downstream 179871 7634638 ~ 7636144 (-)
G86334 NA non-coding downstream 181459 7631396 ~ 7634556 (-)
G86375 NA non-coding upstream 22178 7846481 ~ 7846832 (-)
G86412 NA non-coding upstream 63663 7887966 ~ 7888246 (-)
G86413 NA non-coding upstream 66000 7890303 ~ 7891221 (-)
G86458 NA non-coding upstream 230465 8054768 ~ 8055031 (-)
G86516 NA non-coding upstream 286890 8111193 ~ 8112713 (-)
G86203 NA other downstream 427105 7388236 ~ 7388910 (-)
G86108 NA other downstream 711797 7103880 ~ 7104218 (-)
G86049 LOC101886504,LOC101886427 other downstream 1144768 6670319 ~ 6671247 (-)
LOC122355418 pnmt,LOC107571312,LOC107676565 other downstream 1737947 6051168 ~ 6078068 (-)
G85930 LOC107711793,LOC107755027 other downstream 1803904 5990913 ~ 6012111 (-)
cpped1 cpped1,LOC107584109,LOC107669238,LOC107554009 other upstream 510101 8334404 ~ 8359992 (-)
LOC122355061 tnfrsf17,LOC107554040,LOC107692075,LOC107690067,LOC107584106,LOC107734209 other upstream 687100 8511403 ~ 8513265 (-)
G86783 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 other upstream 786249 8610552 ~ 8612445 (-)
plbd1b LOC107578697 other upstream 858140 8682443 ~ 8687548 (-)
trnar-ccu_66 NA other upstream 863195 8687498 ~ 8687570 (-)

Expression


Co-expression Network