gabrz (gabrz,LOC107675029,LOC107677887,LOC107743757,LOC107754081,LOC107565977,LOC107563789,LOC108426470)


Basic Information

Item Value
gene id gabrz
gene name gabrz,LOC107675029,LOC107677887,LOC107743757,LOC107754081,LOC107565977,LOC107563789,LOC108426470
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 12791289 ~ 12812984 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254482.1
CAAGCCTGTTCCCTCCAATCACCACTGAATCATCACTGATAGGTTCTTCTCCTGTGAGCACAGCGCAGAATGTGTCTGGGATGCAACCAGTAGTTTAGAGGGACCGCTGCGAAGTAGTTGCGCATCACTGACGGATTCCAGCGCCTTGAAAAACGCTGAAAGtcacgttttttttccccctttcacAGAACTAAATGGCTCGGACTTACAACCGATACAACATATGTAGATGAGCGACTCGATATTCTAAGCGTTTGGGAAATGCAAACGATTGCCCGGATTTAATTCAGACGCGAAACGCTCAAGCAGCCATGCATTTGTGCAGCTCTGTGGGCTCTTTGCTCCTCCTCCTTTTCATCAGCAGGAGCATGGATGGCTCTGTCGCCAGCACAGAGGAGATCTTGCCTCCCACCATTCAGAAACTGATGAAGGGATACAACAAGTACCTTAGGCCATTCTTTGGCAatggGCCTGTTACTGTGGGAATGAGTCTGGATATTGCCAGCATAGACACTATATCAGAAATCAACATGGATTACACGGCCACCATCTTTCTTCGTCAGCGCTGGACAGACGAACGTTTGTGTTTTGATGGCAATAAGAGCTTGAGTCTGGATGGGAGACTGGTAGAGCTCCTCTGGGTCCCTGACACGTTCATTGTGGATTCCAAGAAATCCTTCCTGCACGACATCACTGTCGAAAACAGACTGATCCGGATATTCCCCAACGGAACTGTGCTGTATGCCCTGAGAATTACTACAACAGTGGCCTGCAGTATGGATCTAACCAAATATCCcatggacagacagacatgcACCCTTCAACTTGAAAGCTGGGGATATAATGTGAAAGATGTGGTTTTTTATTGGACACGGGGAAACCAGTCAGTTAGCGGTCTTGATCATTTACAGCTGGCTCAGTACACCCTTGAGGATCACTACACCTCTGAATCTGAAGCCGTTTATGAGACTGGTAATTACCCAAAGTTGATCTTCCACTTCAAACTCAAGCGGAGCATCTTATATTTCATTCTGGAGACGTACGTTCCTTCCAGTGCTCTGGTGGTCCTGTCATGGGTCTCATTCTGGATCAGTCAATCCTCAGTACCTGCTCGCATCTGCATAGGAGTGACCACAGTCTTAACTATGACCACCCTGATGATGGGAGCCCGCACCTCTCTACCCAACGCCAACTGCTTCATCAAAGCCATCGATGTGTATCTGGGCATCTGCTTCAGCTTCATCTTTGGCGCTCTGATTGAATATGCAGTCGCTCATTTCTGCACATTACACCAACCAAACGCTGCCAATGCATATATGTATGGCCAGGAAATGCAGGAGCGCGAGGATGAGATGAACGGCATCGTCACTTCCATCGGCAGCCACGCTTTGCGGGCCCGTAAACGGGAGGAGATGCTGTCCCGGATGGGCAGCGCCAGCAACCCCACCCCCAGCGAAAGTAAGGAGGACATCAACTCCTCGCAGCCGCAAACCCGTTGCACCAAGTGTATGTCGACGGCACGCCAAATCGTGCGCTGTCTGAACTGCTGCAAAGTGGAAAACCCGCACTACATCGACAACTACTCAAGGCTGACCTTCCCCCTCTCCTTCGTCGTCATCAACCTCCTCTACTGGACATACTACTTGTACTTCTAAAGCTCCtgttgtctctgtgtgtgtgtgtgtgtgttgagggtCAGTAGTGGTGTACGTGTGTCCCTTTTTGCGTCAGAGTTTACCTAAGGGTTTTTACTCTTACATGTCAGCATGCATTTCAGCTCGACTTGAGTATGACTGACTGCGTTCATGTCACCCACGTATGTGTCATTCCTTAAGGTACACAGGATCTGAGCGAGTTTGGACTAAACGGATATATGCAGATTTGTACCACGTCTACATCTCTGTGTCAGAAATATGTGGCCTTCATTTTCCGATGGAGCTTTAGATTCACTCAAATCCACAACAGAATCAGCCTAGCTGTAAATCGCAATACGAATTTCTGATATCTgtaaaactatttcaaattGACATGAATGTACGTATAATTACTTGTCttttagcacaaaaaaaaaagcatgatttatAAATCACTGTTGACACAAGTAACAAAACATTAGCAATTCATTGAAACGAAGgttggagggaaaaaaaaaactacaaatcatTTCAGCATGTTTGAcagctatattaataataactggaCCAAAGATTTAATGTGTATCTAATGTTCATAATTACAATCTGAATTCATATGAGCACAAGTTATGCATTGTTTTTGGggcatatactgtatgtatttgcaAATTCAACAGTCTTATATCTTGTTATAGGCTGCCAAACAAGAATCAAGCTAGTTTAACTAATTTTCTTCTGGTGATTTATCTGTGTATGTATGGGAACATTCTCTTAGGGATAGAAGCTCTGATTATAAACGGTTCTTTATTATTTGCATGATCATTAATTTATTCTGCTGTAtattgttgtaattttttttttttttttttttttttgggtggggGGGTTAAAGTTACTGACCTAGTTAAAGTTGGgccattaaagaaatagttgacccgaaaatgaaaatatgctgaaaaatTTCACATCCTCAGGCAATGCaggatgtagatgagtttgtttcttcactggaacagatttggagaaatttagcattacttgCTTACCggatggatcctctgcagtgattgggtgctgtcagaatggagagtccaaacagctgctaaatttacgatgaagaaacaaattcatccacatcttggatggcccgagggtgagtcgctttcatttttggggggaACTCTTCCTTTAAGAACTGCACTACAGTATTTTTGATAGCTGactatttttgtgaaaatgccAAAACTGAAACAGTGATGTGTAAATTTGCTAATGGCATATTCAACCCTGACATTTACAAGACTTCTtggcagatttttttgcattgttaatGTCAATTGCTCTTATTTGCATATAGTTTGcagtatacattttttcccaCTGTCAACATGTTTTGTTATCAGTATGTCATAGAGAATTGCTGGTTTGTATGACCTTTTTCAAGAAGATGTTATTCACCTGACCTTTGTGGGTAAATCTTTTCTTTTACTGTGAATGTCATACTTCTTACAGGTGAATATATCTTGCGCTCAAgctgtacaaatatttttatgttctcCTTTTGCACTGAGATTTTGAATTACAAAGGCAATATTACTTTGCCAagaagcattttgtttttgtatatactGACTGAATATTGCAAATGATGTTgaccaaataatatttattattaatactgttattttaataatgcatgaaagTTGCATACCATAGTTAGAGAGTCAACAGGCCATGATGCTATGTTTTCCATGCATGAGGAGTTCTGCATCTGTTTTCACGGATTTGGACATAAACCGTTTATACAATCAATAAGACTTGCTTTAAAGTAATCTGTTTCGAGACAGAACGTaatatttgtatgaaaaaaaaaaaatcattttagttgTTCTTTTGTACAAGTATACACTGTCtggaaacatttattaacattttgacaGATGTAACTGCCAGGTTTCTCTGTactatacaaaaacaaataatggtAGCAAAATTTGCAAGTTGTAATGTCCTGCCAAAAAATCATTCAATGACAGTGGCTTCTTAGAGTCCTATGGTCTCTTACTGATGAGTCCAATTCTCTGTATTCATTTACTTGTATCCTCATCTAATTTCTAGAATCAACTCGATACAGAAGGAGTTGGCTATACATTTGTCACCGCAGCATAATACTGCCCTTAGGATAGTATGCTGTTAGTGCTGATCTTCATGCCAAAAACTGGTCTTTAGCACTTACTTCCAGTAATGAAAATAACAGTTTGTTCTAACCGCACAATATATGCACATTCCTTCGCAGTATTTATAGTAGCTTATAATATATCACTGGACAACATTTTGATTTCAGCATGTAAACGAACACTGTTAATGTGTAATATAcggttgcatttaaaaaactgaGCCTCAAATGGAAAGGCATAACAGTAATGTTTCAATATCATTTTTGTAggattttttggtttttatttatttattttcaatgtagTAAAATATTTCATGTCTCACTATGCATGTAAAGTTAATGTTTAGgataataaaatctttttattgaAAGATTAA
>XM_043254483.1
ACACAAACTATTATCTTGCATAAGTGGATTTTTAATCTTCTCTTAAAGTCCTATCATCATCAACAactgcaattaaaacaaatgtaaactcGGTGGAAACGCTCCGGGCTTGAGTTGATGCAGTCCACTCTTGTAACGCATatggGCCTGTTACTGTGGGAATGAGTCTGGATATTGCCAGCATAGACACTATATCAGAAATCAACATGGATTACACGGCCACCATCTTTCTTCGTCAGCGCTGGACAGACGAACGTTTGTGTTTTGATGGCAATAAGAGCTTGAGTCTGGATGGGAGACTGGTAGAGCTCCTCTGGGTCCCTGACACGTTCATTGTGGATTCCAAGAAATCCTTCCTGCACGACATCACTGTCGAAAACAGACTGATCCGGATATTCCCCAACGGAACTGTGCTGTATGCCCTGAGAATTACTACAACAGTGGCCTGCAGTATGGATCTAACCAAATATCCcatggacagacagacatgcACCCTTCAACTTGAAAGCTGGGGATATAATGTGAAAGATGTGGTTTTTTATTGGACACGGGGAAACCAGTCAGTTAGCGGTCTTGATCATTTACAGCTGGCTCAGTACACCCTTGAGGATCACTACACCTCTGAATCTGAAGCCGTTTATGAGACTGGTAATTACCCAAAGTTGATCTTCCACTTCAAACTCAAGCGGAGCATCTTATATTTCATTCTGGAGACGTACGTTCCTTCCAGTGCTCTGGTGGTCCTGTCATGGGTCTCATTCTGGATCAGTCAATCCTCAGTACCTGCTCGCATCTGCATAGGAGTGACCACAGTCTTAACTATGACCACCCTGATGATGGGAGCCCGCACCTCTCTACCCAACGCCAACTGCTTCATCAAAGCCATCGATGTGTATCTGGGCATCTGCTTCAGCTTCATCTTTGGCGCTCTGATTGAATATGCAGTCGCTCATTTCTGCACATTACACCAACCAAACGCTGCCAATGCATATATGTATGGCCAGGAAATGCAGGAGCGCGAGGATGAGATGAACGGCATCGTCACTTCCATCGGCAGCCACGCTTTGCGGGCCCGTAAACGGGAGGAGATGCTGTCCCGGATGGGCAGCGCCAGCAACCCCACCCCCAGCGAAAGTAAGGAGGACATCAACTCCTCGCAGCCGCAAACCCGTTGCACCAAGTGTATGTCGACGGCACGCCAAATCGTGCGCTGTCTGAACTGCTGCAAAGTGGAAAACCCGCACTACATCGACAACTACTCAAGGCTGACCTTCCCCCTCTCCTTCGTCGTCATCAACCTCCTCTACTGGACATACTACTTGTACTTCTAAAGCTCCtgttgtctctgtgtgtgtgtgtgtgtgttgagggtCAGTAGTGGTGTACGTGTGTCCCTTTTTGCGTCAGAGTTTACCTAAGGGTTTTTACTCTTACATGTCAGCATGCATTTCAGCTCGACTTGAGTATGACTGACTGCGTTCATGTCACCCACGTATGTGTCATTCCTTAAGGTACACAGGATCTGAGCGAGTTTGGACTAAACGGATATATGCAGATTTGTACCACGTCTACATCTCTGTGTCAGAAATATGTGGCCTTCATTTTCCGATGGAGCTTTAGATTCACTCAAATCCACAACAGAATCAGCCTAGCTGTAAATCGCAATACGAATTTCTGATATCTgtaaaactatttcaaattGACATGAATGTACGTATAATTACTTGTCttttagcacaaaaaaaaaagcatgatttatAAATCACTGTTGACACAAGTAACAAAACATTAGCAATTCATTGAAACGAAGgttggagggaaaaaaaaaactacaaatcatTTCAGCATGTTTGAcagctatattaataataactggaCCAAAGATTTAATGTGTATCTAATGTTCATAATTACAATCTGAATTCATATGAGCACAAGTTATGCATTGTTTTTGGggcatatactgtatgtatttgcaAATTCAACAGTCTTATATCTTGTTATAGGCTGCCAAACAAGAATCAAGCTAGTTTAACTAATTTTCTTCTGGTGATTTATCTGTGTATGTATGGGAACATTCTCTTAGGGATAGAAGCTCTGATTATAAACGGTTCTTTATTATTTGCATGATCATTAATTTATTCTGCTGTAtattgttgtaattttttttttttttttttttttttgggtggggGGGTTAAAGTTACTGACCTAGTTAAAGTTGGgccattaaagaaatagttgacccgaaaatgaaaatatgctgaaaaatTTCACATCCTCAGGCAATGCaggatgtagatgagtttgtttcttcactggaacagatttggagaaatttagcattacttgCTTACCggatggatcctctgcagtgattgggtgctgtcagaatggagagtccaaacagctgctaaatttacgatgaagaaacaaattcatccacatcttggatggcccgagggtgagtcgctttcatttttggggggaACTCTTCCTTTAAGAACTGCACTACAGTATTTTTGATAGCTGactatttttgtgaaaatgccAAAACTGAAACAGTGATGTGTAAATTTGCTAATGGCATATTCAACCCTGACATTTACAAGACTTCTtggcagatttttttgcattgttaatGTCAATTGCTCTTATTTGCATATAGTTTGcagtatacattttttcccaCTGTCAACATGTTTTGTTATCAGTATGTCATAGAGAATTGCTGGTTTGTATGACCTTTTTCAAGAAGATGTTATTCACCTGACCTTTGTGGGTAAATCTTTTCTTTTACTGTGAATGTCATACTTCTTACAGGTGAATATATCTTGCGCTCAAgctgtacaaatatttttatgttctcCTTTTGCACTGAGATTTTGAATTACAAAGGCAATATTACTTTGCCAagaagcattttgtttttgtatatactGACTGAATATTGCAAATGATGTTgaccaaataatatttattattaatactgttattttaataatgcatgaaagTTGCATACCATAGTTAGAGAGTCAACAGGCCATGATGCTATGTTTTCCATGCATGAGGAGTTCTGCATCTGTTTTCACGGATTTGGACATAAACCGTTTATACAATCAATAAGACTTGCTTTAAAGTAATCTGTTTCGAGACAGAACGTaatatttgtatgaaaaaaaaaaaatcattttagttgTTCTTTTGTACAAGTATACACTGTCtggaaacatttattaacattttgacaGATGTAACTGCCAGGTTTCTCTGTactatacaaaaacaaataatggtAGCAAAATTTGCAAGTTGTAATGTCCTGCCAAAAAATCATTCAATGACAGTGGCTTCTTAGAGTCCTATGGTCTCTTACTGATGAGTCCAATTCTCTGTATTCATTTACTTGTATCCTCATCTAATTTCTAGAATCAACTCGATACAGAAGGAGTTGGCTATACATTTGTCACCGCAGCATAATACTGCCCTTAGGATAGTATGCTGTTAGTGCTGATCTTCATGCCAAAAACTGGTCTTTAGCACTTACTTCCAGTAATGAAAATAACAGTTTGTTCTAACCGCACAATATATGCACATTCCTTCGCAGTATTTATAGTAGCTTATAATATATCACTGGACAACATTTTGATTTCAGCATGTAAACGAACACTGTTAATGTGTAATATAcggttgcatttaaaaaactgaGCCTCAAATGGAAAGGCATAACAGTAATGTTTCAATATCATTTTTGTAggattttttggtttttatttatttattttcaatgtagTAAAATATTTCATGTCTCACTATGCATGTAAAGTTAATGTTTAGgataataaaatctttttattgaAAGATTAA

Function

symbol description
gabrz Predicted to enable neurotransmitter receptor activity. Predicted to contribute to GABA-A receptor activity and chloride channel activity. Predicted to be involved in several processes, including chemical synaptic transmission; chloride transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within chloride transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in cerebellum; diencephalon; eye; and telencephalon. Orthologous to human GABRP (gamma-aminobutyric acid type A receptor subunit pi).

NR:

description
PREDICTED: gamma-aminobutyric acid receptor subunit pi-like

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05189 GABRP; gamma-aminobutyric acid receptor subunit pi

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254482.1 True 4190 mRNA 0.40 10 12791289 12812984
XM_043254483.1 False 3866 mRNA 0.39 8 12803744 12812984

Neighbor

gene id symbol gene type direction distance location
valopb valopb,LOC107566010,LOC107754082,LOC107743790,LOC107677889,LOC107675006,LOC107563788,LOC108426422 coding upstream 17594 12766125 ~ 12773695 (+)
gjz1 si:rp71-1c10.10,LOC107675010,LOC107563802,LOC107754116,LOC107677869,LOC107743778 coding upstream 39557 12750626 ~ 12751732 (+)
znf668 znf668,LOC107675019,LOC107754087,LOC107743759,LOC107563787,LOC108426467 coding upstream 41283 12746551 ~ 12750006 (+)
rnf40 LOC107754088,LOC107675023,LOC107743762,LOC107565773,LOC107677883,LOC107563784 coding upstream 60361 12717290 ~ 12730928 (+)
phkg2 phkg2,LOC107743765,LOC107675026,LOC107563781,LOC107566018 coding upstream 76617 12709411 ~ 12714672 (+)
adgra1a adgra1a,LOC107754080,LOC107675035,LOC107565950,LOC107693584,LOC107563791,LOC108426471 coding downstream 2207 12815191 ~ 12841965 (+)
mxtx2 mxtx2,LOC107566646,LOC107675004,LOC107754102,LOC107722443,LOC107563796 coding downstream 45264 12858248 ~ 12859528 (+)
bms1 bms1,LOC107675025,LOC107689949,LOC107566656 coding downstream 47150 12860134 ~ 12877268 (+)
gfra1b gfra1b,LOC107755550,LOC107702444,LOC107581544,LOC107689950,LOC107707958 coding downstream 269189 13082173 ~ 13107311 (+)
ablim1b ablim1b,ablim1,LOC107565789,LOC107689952,LOC107581547,LOC107755543 coding downstream 390798 13203782 ~ 13268621 (+)
G87753 NA non-coding upstream 232557 12556682 ~ 12558732 (+)
G87718 NA non-coding upstream 313380 12476805 ~ 12477909 (+)
G87669 NA non-coding upstream 551088 12239783 ~ 12240201 (+)
G87665 NA non-coding upstream 632781 12158246 ~ 12158508 (+)
G87664 NA non-coding upstream 633474 12157586 ~ 12157815 (+)
G87891 NA non-coding downstream 87088 12900072 ~ 12900399 (+)
G87934 NA non-coding downstream 383000 13195984 ~ 13197074 (+)
G87979 LOC107755539,LOC107566694,LOC107702418,LOC107708141,LOC107689963 non-coding downstream 535965 13348949 ~ 13383848 (+)
G87981 NA non-coding downstream 547330 13360314 ~ 13361050 (+)
G88010 NA non-coding downstream 616429 13429413 ~ 13431559 (+)
gall si:rp71-1c10.8,LOC107677873,LOC107743798,LOC107675007,LOC107566084,LOC107754084,LOC107563807 other upstream 28558 12760374 ~ 12762731 (+)
G87817 NA other upstream 53640 12732764 ~ 12737649 (+)
nbr1a nbr1,LOC107669491,LOC107706899,LOC107582742,LOC107727312,LOC107666919 other upstream 845654 11936841 ~ 11945635 (+)
hoxb6b hoxb6b,LOC107669478,LOC107706870,LOC107582852,LOC107552740,LOC107666911,LOC107727299 other upstream 907192 11882151 ~ 11884097 (+)
G87315 zeb1b,LOC107666916,LOC107706887,LOC107727309,LOC107582755,LOC107552760,LOC107669492 other upstream 1089634 11694844 ~ 11701655 (+)
G88016 NA other downstream 628959 13441943 ~ 13444915 (+)
G88082 NA other downstream 782810 13595794 ~ 13596348 (+)
gucy2g gucy2g,LOC107702423,LOC107755438,LOC107722192,LOC107581632,LOC107684125,LOC107571103,LOC108273537 other downstream 1042711 13855695 ~ 13864743 (+)
LOC122355339 LOC107702424 other downstream 1081377 13894361 ~ 13904627 (+)
rnf157 rnf157,si:dkey-49c17.3,LOC107702467,LOC107755520,LOC107684047,LOC107722211 other downstream 1165187 13978171 ~ 13993044 (+)

Expression


Co-expression Network