LOC122355060


Basic Information

Item Value
gene id LOC122355060
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 6330337 ~ 6336029 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252162.1
tttatttagtattatctTATATGTTTAGTATTATTTGCTTTCTGCCTGCTATGATTGTACACACATTTTCGttctttatttgcataaaattttGTACCATTGTTTACATATATCCTCCACCACAGCAGATGAAGGCATCTGGACACCCGACCTTCTTGCCAGTCCACGACTGATACTTGATGCTTCATTGGTGTGAACCCTAAAAGGAGAACAAAAGAGAACCAACCAAGTAATGTCCAAGAAGACAGGGAAGCTTGTGCAGAAAAAAGCAGCTACTGTGAATCCTCAGGGATGCCGTAAGGGTGCTCTGGATCCTGAAAGGGAGGATGATGGAAGGCATGCAGTATGATCGGCCTTGGTGCAATAGTGGGGACATTCGGGGTGTAACCTGCTTGAGGGTACAGAAACCATTTCAGAATGGCGCCACCTGGAGGAGCTAGAGAGAACCAGATAGGACCTTGTGCATTCTCTCATGCCACAAAGAAAATTCCATTCCCTTGCCTTGGCCCCTGTCTCGACAGTAAGTCTACTCCCACATTCAGATAGCCAGGAATGTACAGTTCTCTCAGTGAGGAACTTGTTCTAGGACCATAGGATGATCTGATGTGACAGTTTGTACAATGGCAATGAGCGCAGACCCCcttggtggttgatgtaagagattAGTGAGAGACGTTAACAAGAAGCTCCCAGCACAAGGCCCTGATTCAAGAACCAATTTTTCCTCCACAGATCGAGAGACCTTGATCATGGGTCTATCCCTCTGGGAAATATTCCTTGTTCTTTTGCCACCACTGTAGGGTTCTCATGTACAGAAGGCCAAAAGGTATCACATTGGATGCATCTGCTATAAGACCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252162.1 True 858 lncRNA 0.45 3 6330337 6336029

Neighbor

gene id symbol gene type direction distance location
med1 med1 coding upstream 467047 5840203 ~ 5863290 (+)
LOC122355830 tceb2,LOC108280902,LOC107564001,LOC103036770,LOC108427344 coding upstream 564494 5762494 ~ 5765843 (+)
kbtbd2 kbtbd2,LOC107711671,LOC107674719,LOC107660299,LOC107708283,LOC107551836 coding upstream 630431 5691358 ~ 5699906 (+)
si:ch211-217a12.1 si:ch211-217a12.1,LOC107674759,LOC108431403,LOC106590406 coding upstream 646009 5668900 ~ 5684328 (+)
fkbp10b fkbp9,fkbp10b,LOC107674681 coding upstream 708997 5614079 ~ 5621340 (+)
LOC122355310 LOC107569775 coding downstream 245559 6581588 ~ 6583943 (+)
plxdc1 plxdc1,LOC107732187,LOC107566549,LOC107694606 coding downstream 463756 6799785 ~ 6961984 (+)
plcd3b plcd3b,LOC107751666,LOC107561636,LOC107662566 coding downstream 847401 7183430 ~ 7219444 (+)
nmt1b LOC107561637,LOC107662571,LOC107758416 coding downstream 889833 7225862 ~ 7233649 (+)
svild LOC107758427,LOC107675649,LOC107561632 coding downstream 897909 7233938 ~ 7292140 (+)
G85971 NA non-coding upstream 211824 6101162 ~ 6118513 (+)
G85967 NA non-coding upstream 232003 6098128 ~ 6098334 (+)
G85905 NA non-coding upstream 372103 5957894 ~ 5958234 (+)
G85774 NA non-coding upstream 508650 5821431 ~ 5821687 (+)
G85713 NA non-coding upstream 728156 5601474 ~ 5602181 (+)
G86033 NA non-coding downstream 187931 6523960 ~ 6524390 (+)
G86037 NA non-coding downstream 233194 6569223 ~ 6569454 (+)
G86038 NA non-coding downstream 233684 6569713 ~ 6569968 (+)
G86043 NA non-coding downstream 237885 6573914 ~ 6574126 (+)
G86045 LOC101886504,LOC101886427 non-coding downstream 332895 6668924 ~ 6669449 (+)
G85986 adprh,LOC108411014,LOC107726130,LOC105894051,LOC108274007 other upstream 113770 6214919 ~ 6216567 (+)
G85962 NA other upstream 233605 6095948 ~ 6096732 (+)
becn1 becn1,atg6 other upstream 376851 5886952 ~ 5953486 (+)
LOC122355829 tgfb1i1 other upstream 514022 5766397 ~ 5816315 (+)
drosha drosha,rnasen,LOC107716466,LOC107727962,LOC107556767 other upstream 883618 5426581 ~ 5446719 (+)
G86019 LOC107570179 other downstream 104792 6440821 ~ 6441526 (+)
G86029 NA other downstream 185800 6521829 ~ 6522571 (+)
G86142 NA other downstream 967109 7303138 ~ 7304848 (+)
G86143 NA other downstream 971895 7307924 ~ 7308229 (+)
LOC122355675 NA other downstream 1479794 7815823 ~ 7844083 (+)

Expression


Co-expression Network