G2850


Basic Information

Item Value
gene id G2850
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 4725986 ~ 4726482 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU3177
GGCACTCATATATTTAACTCAGGTGCTGTCCATTTCTTCTGATCATCCTTGAGATGGTTCTACACCTTCATTTGAGTCCAGCTGTGTTTGATTATACTGATTGGACTTGATTAGGAAAGCCACACACCTGTCTATATAAGACCTTACAGCTCACAGTGCATGTCAGAGCAAATGAGAATCATGAGGTCAAAGGAACTGCCTGAAGAGCTCAGAGACAGAATTGTGGCAAGGCACAGATCTGGCCAAGGTTACAAAAAAATTTCTACTGCACTTAAGGTTCCTAAGAGCACAGTGGCCTCCATAATCCTTAAATGGAAGACGTTTGGGACGACCAGAACCCTTCCTAGAGCTGGCCGTCCGGCCAAACTGAGCTATCGGGGGAGAAGAGCCTTGGTGAGAGAGGTAAAGAAGAACCCAAAGATCACTGTGGCTGAGCTCCAGAGATGCAGTCGGGAGATGGGAGAAAGTTGTAGAAAGTCAACCATCACTGCAGCCCT
>TU3178
GGCACTCATATATTTAACTCAGGTGCTGTCCATTTCTTCTGATCATCCTTGAGATGGTTCTACACCTTCATTTGAGTCCAGCTGTGTTTGATTATACTGATTGGACTTGATTAGGAAAGCCACACACCTGTCTATATAAGACCTTACAGCTCACAGTGCATGTCAGAGCAAATGAGAATCATGAGGTCAAAGGAACTGCCTGAAGAGCTCAGAGACAGAATTGTGGCAAGGCACAGATCTGGCCAAGGTTACAAAAAAATTTCTACTGCACTTAAGGTTCCTAAGAGCACAGTGGCCTCCATAATCCTTAAATGGAAGACGTTTGGGACGACCAGAACCCTTCCTAGAGCTGGCCGTCCGGCCAAACTGAGCTATCGGGGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3177 False 497 TUCP 0.36 1 4725986 4726482
TU3178 True 382 lncRNA 0.37 1 4725986 4726367

Neighbor

gene id symbol gene type direction distance location
CI01000000_04698746_04717749 RAPGEF2 coding upstream 7078 4698041 ~ 4718908 (+)
CI01000000_04661351_04667059 NA coding upstream 58899 4661351 ~ 4667087 (+)
CI01000000_04576065_04586515 ETFDH coding upstream 139105 4576065 ~ 4586881 (+)
CI01000000_04547587_04562715 RXFP1 coding upstream 163149 4547587 ~ 4562837 (+)
CI01000000_04462428_04462831 NA coding upstream 262874 4462428 ~ 4463112 (+)
CI01000000_05008086_05008382 NA coding downstream 281636 5008003 ~ 5008641 (+)
CI01000000_05030001_05137032 FSTL5 coding downstream 303634 5030001 ~ 5137032 (+)
CI01000000_05173896_05177992 QDPRA coding downstream 447529 5173896 ~ 5178085 (+)
CI01000000_05204803_05264985 LDB2, LDB2A coding downstream 478436 5204803 ~ 5264985 (+)
CI01000000_05267332_05282842 TAPT1 coding downstream 540965 5267332 ~ 5283179 (+)
G2847 NA non-coding upstream 154392 4571357 ~ 4571594 (+)
G2845 NA non-coding upstream 156049 4569731 ~ 4569937 (+)
G2795 NA non-coding upstream 241171 4484583 ~ 4484815 (+)
G2793 NA non-coding upstream 246792 4478985 ~ 4479194 (+)
G2792 NA non-coding upstream 249221 4476557 ~ 4476765 (+)
G2827 NA non-coding downstream 621 4726988 ~ 4727323 (+)
G2858 NA non-coding downstream 15009 4741376 ~ 4741768 (+)
G3041 NA non-coding downstream 120306 4846673 ~ 4848642 (+)
G3081 NA non-coding downstream 190772 4917139 ~ 4917501 (+)
G3115 NA non-coding downstream 235075 4961442 ~ 4961673 (+)
G2774 NA other upstream 271754 4453778 ~ 4454232 (+)
G579 NA other upstream 2817178 1767917 ~ 1908808 (+)
G435 NA other upstream 3293132 1425121 ~ 1432854 (+)
G350 NA other upstream 4049049 671842 ~ 676937 (+)
G252 NA other upstream 4218914 503209 ~ 507072 (+)
G6811 NA other downstream 5478464 10204831 ~ 10321679 (+)
G6820 NA other downstream 5700856 10427223 ~ 10433018 (+)
G7018 NA other downstream 6252122 10978489 ~ 10980872 (+)
G7153 NA other downstream 6518090 11244457 ~ 11245633 (+)
G7514 NA other downstream 7410155 12136522 ~ 12137008 (+)

Expression


Co-expression Network