LOC122355220 (LOC107561990,LOC107660458)


Basic Information

Item Value
gene id LOC122355220
gene name LOC107561990,LOC107660458
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 197400 ~ 198867 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252193.1
CCAGTTGGCTATCAGGACTCTCAGGATCCATGTCAAAGTAATACAAACTTAACAGCTCTGCACTTGCAGTatccatttttgtattttggacACAAATACAATAACATATATGTCAACAATAATGGATATTTGACGTTTGAACCATTTTATGAAAGCCTCCCCAAGGCTTTTCCTGCCAACTCTACTAGAGACATTATAGCTCCACTCTGGGCAAAGTTTGGAAGCATCTCCTATTGCATTGTAACTCAAGGACATATTTTGGACCGGGCGAGAAATGATATCAAACAGTATTTCCCTCAGTTTGGGTTCTCAGTATATACTGTCTTCATTGCTACATGGAATAGCCCCAATATGGAATCCTCCTTTCAAGTTGTTCTAGTCATTTGCAGCACTCTTTCCTTTGTCATAATGAACTATGGAAATATCTCCTCAACTGATCAGAGGTTTCAGGTTGGACAGAATAAAAATCTTCCTAAACGACATTAAGGaccctgaatgttttttttagtagaattagaaaataaaacatttcaaagaccACCATATTggtcatatttcatttattaattacattttttatttacttataggCTGGCTATGACACAATAAACTCAACAGATTATTTTTCAATCCCTGTGCCTGATGAAAGTAAGCTGTTCAACTCCAGTAATGTCAATGTCCCGGGACGCTGGGTGTTTCGTGTTGATGGTGGACCTGAGGAGGgaGTATTCTACCCATATGGAGATGAAGAGGATGAGATGTGTCCTCGGTCAGATGATGGAAGTTCTCCACCGATTCCTCTTCTGCAGCCGTTTGTATACTTTGGCCGAgtatatgacaaaatatttGTGAATAATAATGGAGACCTGACTTTTAATGGGCCATTTTATCAGTGGTATCCCTACTATTTTCCTGATTACTCATCTACAGACATCATCGCTCCACTATGGACAGACATTAATAATAGTGAACAAGGAAC

Function

NR:

description
PREDICTED: uncharacterized protein LOC107561990

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252193.1 True 979 lncRNA 0.38 5 197400 198867

Neighbor

gene id symbol gene type direction distance location
LOC122355205 dlx4b,LOC107739765,LOC107664616,LOC107708902,LOC107557342 coding downstream 20697 171762 ~ 176703 (-)
LOC122355848 akt2l,akt2,LOC107722100,LOC107671613,LOC105023568,LOC107711004 coding downstream 86274 103795 ~ 111126 (-)
LOC122355847 LOC107690849,LOC107671610,LOC107710396,LOC107565533,LOC107575145,LOC107575144 coding downstream 134357 44012 ~ 63043 (-)
LOC122355212 LOC107561990,LOC107575498 coding upstream 19347 218214 ~ 222873 (-)
LOC122355214 LOC107561990,LOC107575498 coding upstream 25011 223878 ~ 228330 (-)
LOC122355215 vkorc1,LOC107719575,LOC107598672,LOC107654009,LOC108413442 coding upstream 34399 233266 ~ 234678 (-)
LOC122355213 zgc:92313,LOC107719557,LOC107708960,LOC107664633,LOC107598673,LOC107653945,LOC107557352 coding upstream 43963 242830 ~ 247565 (-)
LOC122355757 LOC107557351,LOC107719532,LOC107654013,LOC107708952,LOC107598581,LOC107664606,LOC107708954 coding upstream 73399 272266 ~ 290655 (-)
LOC122355221 LOC107561990,LOC107660458 non-coding downstream 7 196901 ~ 197393 (-)
G84487 NA non-coding downstream 56319 140100 ~ 141081 (-)
G84492 LOC107565537,LOC107671635,LOC107690840 non-coding downstream 107826 88055 ~ 89574 (-)
LOC122355197 NA non-coding upstream 183705 382572 ~ 385022 (-)
LOC122355423 NA non-coding upstream 187022 385889 ~ 386457 (-)
G84547 NA non-coding upstream 279156 478023 ~ 478431 (-)
G84654 NA non-coding upstream 411200 610067 ~ 611847 (-)
G84666 slc35g1,si:ch211-197g18.2,LOC107598601,LOC107654036,LOC107664634,LOC107664593,LOC107557359,LOC107708939 non-coding upstream 461222 660089 ~ 663746 (-)
LOC122355191 dusp3b,LOC107753093,LOC107590411,LOC107688089,LOC107709997 other downstream 26105 168048 ~ 171295 (-)
G84486 emsy,LOC107671635,LOC107690840,LOC107722098,LOC107565537,LOC107747365 other downstream 67415 78617 ~ 129985 (-)
G84485 vaspa,LOC107722097,LOC107565535,LOC107710395,LOC107671612,LOC107575450 other downstream 74633 12045 ~ 122767 (-)
G84521 NA other upstream 120463 319330 ~ 321260 (-)
prr12a prr12a,LOC107708947,LOC107664611,LOC107598586,LOC107654018,LOC107732166 other upstream 141406 340273 ~ 360482 (-)
LOC122355759 NA other upstream 285571 484438 ~ 490379 (-)
zgc:163073 LOC107653918,LOC107732170,LOC107708955,LOC107557349,LOC107664608,LOC107598675 other upstream 298097 496964 ~ 500219 (-)
ifnphi4 LOC107653919,LOC107732171,LOC107598640,LOC107664622,LOC107708945,LOC107557348 other upstream 344379 543246 ~ 552443 (-)

Expression


Co-expression Network