LOC122355291


Basic Information

Item Value
gene id LOC122355291
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 9610293 ~ 9616636 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252201.1
aaaaaaaaaaaaaaaaaaaaacacaacaaaacaaaagatagttcaaatattcagttttaatcACAGGAAACATTATAGATTTTAGATAACCACAAACCATAGAATTTAGTATTAGACAAGAAAGGACACATGctaaaaaaattgtgcattgTGTGGTGGCAAATTAGCATACTACACTACCTATAAAATACACACTTGCACAAAATAAGCAATCCATTATGGTAATTATACACAGGAAACTTATTCAGACAAGGTTGTTTGCAGTCATCTTAGTTTCTGAATTTGGCACgacaaaatctgaaaatgtggAAAGAATCTCAGCAATCAACCCCACTGAGTCACAGCATTCTCTTCACCTAATTGAACACTGCTAAAATTTAATTAAGATTTCCCCAACAGAGTGTTATTTATAGTCAAAGTGCTCCAAATATGCTTAGACTGAAAAGGTACCAAAATATAGATGGCCTTTTGAACCGAAGCATCATATATTctacacatgtaaatatgtagaaatatttatttttactacacTTAATGATATTTACATCACTTAATATCATTTAACCCAAAAGACCCTGTGACAAGTACTGtcatacagttttctttagcaGTCTGAGATTGAATAGTCCAGTCTTGCTGTGTTCATAAACCCTCATTAGTTGCTTATTCAATGATCATCTTATTTGCTTAACCTACTTTACCAAAATCTACCACAGATTTTGGTGAGCATTTTAGTTATCGCTAATGATGCGACACCAGAGAAAATCCCCAGTCATGGTTTTCTGCCTGCGTTTTAgccaggcaggcaggcaggcaggcctCTGTAAAATTCCACAAGCAGCCCTGAACGCACTGAAACTAGGTCAGCACTGTTattgcagagagagaaagagaggaggagggagagcaatggagagagaaagagagagagagagagagagagagagagagagagagaggggggaagaAAGCAAGATCCAGGCCTGGAGACAGGAacagccacaaacacacacttacacatgcacagaaacacacgcacactgacactcacacacaggcAGTCAACAAGCTGcatgcacaagcacacacactctcctctcaACACGCAAATACATTTGCAGGCGTGTAAGCACATATGAACCGGTCTGTCCATAAACAAGTGGCTTGACAGCTAGCGTTACCCAGCATACCACAAATGCAGCTGCTGAGAGTGTGCAAAGGATGTATACCAGAAGACCTGTATAATAATAGATGTTACGTAAGAGTACATTTAGACAGGAAGAGTTGTGCAATTGTTGTGGCTGTGGCCGCTAAGGCAAGGCCTAAGAATGACACAGTTTGGCGTTTGCATAGTAATGGACAAACACATCTGCCACCCCCTCATTTTCTCTGTACGTCTGTCCCTATTTATCTCTCCCTCTCACCCTCCTTTTCTCTTCGCATATGACGCACACACTGCCTCTCAACAAACAGTCCCTGGCGCAAGAGGCTGGCCAAGCGTGACAGGGCCTTTGCCTCCCCCCTCTGACTGCCCCTCTACTTAAACATGCGACCAACTGAAAGAGTTAGAGCTGAAGAATTAAGGTGATGCATTTTGCACACCTCAGAACATTATGTCAAGTATATGCTATTAACAAATCGACTTTATCCTACAAGTAGGAAATTAAAAACTAGCGTCAGAAACGCGTCATCAGCCGAAACGTTAAATGCATGCTAGTCTTGCAGATGAAGATTTTCAATTTAAGCTCTTGAGATAACTTGTTTTATAATGCCGGTTGGGAATCGAGAAGAGTCTCGGAAGAAGCCGGGTATTGGGCTAAAGGTCTTGCGTTTAACTGTGTCACTGAAACAGACCATGCACTGAATGGCAGTGGAAAAGGGTAATGAGTGAAGGCCGCCTGTTTCCGTGTGGCCGTGACGGGGCCCATCAGGGTGAGGCGGACTGTGAAAAGGGGGCAGTCGCTAGATACTGAACTCTGCACAACCCCCTGCCAAAAACATGGTGGAGCCAGCCAGAGGAGAGATGAGGGGTAGGGAAAGAAGCGAAAAGGAGGAGTGGGCTGTTTTGGAAGCAGTTGGGAGATGGAGCCGGATGGTCCGAGGTTGGGTTCATGGTGGCTGAAATGTTTCCCTGCTCACTGCTGATCAAAGACCGTCTTTAACATGACATATGGATCAGCAGACACTAATGAGAGGGCAGTGGCCAGCTGAATCTCCACAGTAACAAAAGAGGCTGGGACATCTGGAGTCAGCCACACACAGACTCCTGGTGAGTTTTGGGGGAGCTGCCGAACGTCCGCCTGTAATGGGAGGACTGGATAACAAATATGGCAGTGGGCAGATGAATGAAATGTCAAGTTAACCCTCTGACGTTTCATGGTTTTGTTATCAGTCTGAGGACAAATAATCAgtgtttacaatacaatatcAGATTTGCAATACAAGGTAgtagaaaaaaatgtcatactATTTGCAAACCTActtgtcacatttaaaaacaaaatattgaaagaaaaggtaacaaaacaagaaaaacccTTTCTCTATGCCTGGCTTTTACATTTTCCTATGCCcctcatttaataataaatgcatagcGCAGAGGAAGTAGAAtcgaaaaaaatgtatatataatattgctgcattttatgtatatatttttacatacatatatcgCTCTTGGTACTGCCATGTAtaattgcattttgtatttgaCTTTGAGAGTAAAgaattttttactaatttaattttgatatcTGTTAATTGTTTGAAACAATTGCTGTTCTGtcgcctttttatttttgtatctcTCTGATTGAATAGCATCAATAAAAagagttaaacaaaaaaactgcacaatgcTATTGGTATGACTATTGGTCTGCAATTGcaaattttaatgcaatatttttttctttattacctatttttgttgcaatttcctttattttaaaatatatttttaattattcgaTATTTAATTATCACTTGGTTTGTCCATGCTGttaatatatgatattaatTACTGTTTCTTGCATTGTCTTGATGTTGCTTAAAATGCTCTGATTGTAAGTTCATCcctgttttatatttacatgacaTGTACCTAAAATGTtcttatattgtaataaatgattTGCTCTATATAGCTCCAGTCTGACATATTTGTAACAGCTTACATGAAgataaataaatccatatgaATGATTGGCA

Function

GO:

id name namespace
GO:0009063 cellular amino acid catabolic process biological_process
GO:0009078 pyruvate family amino acid metabolic process biological_process
GO:0009080 pyruvate family amino acid catabolic process biological_process
GO:1901605 alpha-amino acid metabolic process biological_process
GO:1901606 alpha-amino acid catabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0042851 L-alanine metabolic process biological_process
GO:0042853 L-alanine catabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0042594 response to starvation biological_process
GO:0031667 response to nutrient levels biological_process
GO:0006522 alanine metabolic process biological_process
GO:0006524 alanine catabolic process biological_process
GO:0009991 response to extracellular stimulus biological_process
GO:0016054 organic acid catabolic process biological_process
GO:0005102 signaling receptor binding molecular_function
GO:0005179 hormone activity molecular_function
GO:0030545 receptor regulator activity molecular_function
GO:0048018 receptor ligand activity molecular_function
GO:0098772 molecular function regulator molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252201.1 True 3213 lncRNA 0.39 2 9610293 9616636

Neighbor

gene id symbol gene type direction distance location
hdlbpb hdlbpb,LOC107733459,LOC107657280,LOC107584388,LOC108430121,LOC108273755 coding upstream 34573 9559680 ~ 9575720 (+)
wnt3 wnt3,LOC107584390,LOC107556586,LOC107723638,LOC107665892,LOC108273758,LOC100707095 coding upstream 88631 9498576 ~ 9521662 (+)
mrpl27 mrpl27,LOC107657270,LOC107665862,LOC107584394 coding upstream 327213 9281191 ~ 9283080 (+)
ca10a ca10,ca10a,LOC107584395,LOC103361575 coding upstream 368801 9118929 ~ 9241492 (+)
caskin2 LOC107660851,LOC107734197,LOC107721987,LOC107692038,LOC564253,LOC101882765 coding upstream 667260 8896217 ~ 8943033 (+)
polr2a polr2a,LOC107733452,LOC107584383,LOC107556578,LOC107738966 coding downstream 6167 9622803 ~ 9635117 (+)
capgb capgb,LOC107733451,LOC107657288,LOC107665882,LOC107556576,LOC108430072 coding downstream 19837 9636473 ~ 9644761 (+)
si:dkey-219e21.2 LOC107556575,LOC107738991,LOC107665865,LOC107733449,LOC107657266,LOC107584401 coding downstream 32115 9648751 ~ 9653386 (+)
si:dkey-219e21.4 LOC107657292,LOC107733464,LOC107584381,LOC107665876,LOC107738992,LOC107556571 coding downstream 48716 9665352 ~ 9669102 (+)
LOC122355279 cdca9,LOC107733465,LOC107657294,LOC107584382 coding downstream 54885 9671521 ~ 9673314 (+)
G86959 LOC107657285,LOC107733473,LOC107738963,LOC107665891 non-coding upstream 9611 9596293 ~ 9600682 (+)
G86943 NA non-coding upstream 123114 9481585 ~ 9487179 (+)
G86758 NA non-coding upstream 734838 8875115 ~ 8875455 (+)
G86756 NA non-coding upstream 736748 8873327 ~ 8873545 (+)
G86713 LOC107578697 non-coding upstream 924176 8682389 ~ 8686117 (+)
G86981 NA non-coding downstream 3046 9619682 ~ 9622352 (+)
G86984 NA non-coding downstream 38323 9654959 ~ 9655277 (+)
G87094 NA non-coding downstream 343102 9959738 ~ 9959969 (+)
G87095 NA non-coding downstream 344011 9960647 ~ 9960958 (+)
LOC122355662 NA non-coding downstream 461832 10078468 ~ 10098941 (+)
pkd1b LOC107723630,LOC107665861,LOC107556563 other upstream 303462 9285663 ~ 9306831 (+)
arsg arsg,LOC107734203,LOC107660857,LOC107692046,LOC107554066 other upstream 757844 8836448 ~ 8852449 (+)
hbbe2 hbbe2,LOC107734191,LOC105910203 other upstream 1412389 8195964 ~ 8197904 (+)
msrb1b msrb1b,LOC100705913 other upstream 1503513 8105148 ~ 8106780 (+)
LOC122355675 NA other upstream 1766210 7815823 ~ 7844083 (+)
mfsd8 mfsd8,LOC107738985,LOC107556570 other downstream 40033 9656669 ~ 9664139 (+)
LOC122355274 shisa9a,LOC107584108,LOC107734251,LOC107669237,LOC107554036,LOC107731434,LOC107692077 other downstream 140611 9757247 ~ 9767228 (+)
LOC122355252 fam20cl,LOC107741571,LOC107664989,LOC107570372,LOC108436593,LOC102782963,LOC108259419 other downstream 248178 9864814 ~ 9874515 (+)
LOC122355255 NA other downstream 266397 9883033 ~ 9899001 (+)
LOC122355192 opn4b,LOC107552747,LOC107739286,LOC107568552,LOC107582762,LOC107700131 other downstream 864856 10481492 ~ 10496277 (+)

Expression


Co-expression Network