LOC122355479


Basic Information

Item Value
gene id LOC122355479
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11083398 ~ 11089158 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252223.1
TACACATTGCAGGCTTTCCATGGAGACTTGAAGAACAGAATCCACAGAGCAAACACATTTCCAGGCAACCCAAAGATGAACTCCAAAATGAGAACAGGCTTTAAAATTGAGtgactGAACCTCATTCCCTCTCGCCCTTATTTGAGCCAAGATAACCTGCGTCAAACATATCACTGAGGAATGCTTCACAGAGGCCTTTTAATCACAAAAGGCACACATTTTTCTTCTGGAAGCGCATGACTGAAAGTAATAGGACTTCTAATCGAATGGAAGTTTTGGACatctatttctttaaaaatcaagaCTTTTGCTTCTTAAAAGCTTGGTCAAGAAAACATCTTCATGAGATGACAGCGCCTAATAGTACCTTTGAGTACTATTGATTGTTACCTTGACATAACCGTTATCATAATCATTATGCCATGTCACCTTCAGTGTCTCACAGGGCTCTGTATGAGTTGTAgagatgaaataataaatggcCGTGAGGTTTCCA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252223.1 True 496 lncRNA 0.40 2 11083398 11089158

Neighbor

gene id symbol gene type direction distance location
mta3 LOC107698822,LOC107582777,LOC107728718,LOC107700107,LOC108430512 coding upstream 1122 11055694 ~ 11082276 (+)
pigf pigf,LOC107698824,LOC107550047,LOC107749355,LOC107582779,LOC107728710,LOC107700117 coding upstream 69739 11006964 ~ 11013659 (+)
gch2 gch2,LOC107550032,LOC108429343,LOC105896951,LOC105006138 coding upstream 78456 11000854 ~ 11004942 (+)
calm2b calm1,LOC105896953,LOC107670363,LOC102778633,LOC102293206 coding upstream 134357 10944753 ~ 10949041 (+)
fshr fshr,LOC107582855,LOC107673646,LOC107728706 coding upstream 186118 10888133 ~ 10897280 (+)
ppm1bb ppm1bb,LOC107582773,LOC107698817,LOC107749348,LOC107550052,LOC107700122,LOC108430462,LOC108273990,LOC107739221 coding downstream 52466 11141624 ~ 11165042 (+)
six3b six3b,LOC107550037,LOC107698799,LOC107582771,LOC107739239,LOC107749382,LOC107700110 coding downstream 121093 11210251 ~ 11212765 (+)
prkcea prkcea,LOC107550054,LOC107698816,LOC107739250,LOC108274197,LOC108430457 coding downstream 141029 11230187 ~ 11277491 (+)
epas1a LOC107698815,LOC107550055,LOC107739260,LOC107700124,LOC107582769 coding downstream 189114 11278272 ~ 11298505 (+)
glud1b glud1b,LOC107739271,LOC107700126,LOC107698813,LOC107550058,LOC107749346,LOC108430434 coding downstream 216914 11306072 ~ 11320705 (+)
G87222 NA non-coding upstream 42492 11040668 ~ 11040906 (+)
G87210 NA non-coding upstream 86404 10996730 ~ 10996994 (+)
G87207 LOC107582782,LOC107698827,LOC107728716,LOC107550046,LOC107673648,LOC107550045 non-coding upstream 95688 10981278 ~ 10987710 (+)
LOC122355200 NA non-coding upstream 127603 10954658 ~ 10955795 (+)
LOC122355308 NA non-coding upstream 143569 10916186 ~ 10939829 (+)
LOC122355611 NA non-coding downstream 33765 11122923 ~ 11130890 (+)
G87238 NA non-coding downstream 135607 11224765 ~ 11227915 (+)
G87240 NA non-coding downstream 170948 11260106 ~ 11419212 (+)
G87241 ldb3,LOC107743565,LOC107696891 non-coding downstream 287955 11377113 ~ 11392372 (+)
G87272 NA non-coding downstream 349247 11438405 ~ 11515996 (+)
svila LOC107686370,LOC107657481,LOC107584371,LOC107749370,LOC107549408 other upstream 500853 10523143 ~ 10582545 (+)
LOC122355633 rhoq other upstream 583700 10497425 ~ 10499698 (+)
LOC122355192 opn4b,LOC107552747,LOC107739286,LOC107568552,LOC107582762,LOC107700131 other upstream 587121 10481492 ~ 10496277 (+)
LOC122355255 NA other upstream 1184397 9883033 ~ 9899001 (+)
LOC122355252 fam20cl,LOC107741571,LOC107664989,LOC107570372,LOC108436593,LOC102782963,LOC108259419 other upstream 1208883 9864814 ~ 9874515 (+)
G87315 zeb1b,LOC107666916,LOC107706887,LOC107727309,LOC107582755,LOC107552760,LOC107669492 other downstream 605686 11694844 ~ 11701655 (+)
hoxb6b hoxb6b,LOC107669478,LOC107706870,LOC107582852,LOC107552740,LOC107666911,LOC107727299 other downstream 792993 11882151 ~ 11884097 (+)
nbr1a nbr1,LOC107669491,LOC107706899,LOC107582742,LOC107727312,LOC107666919 other downstream 847683 11936841 ~ 11945635 (+)
G87817 NA other downstream 1643606 12732764 ~ 12737649 (+)
gall si:rp71-1c10.8,LOC107677873,LOC107743798,LOC107675007,LOC107566084,LOC107754084,LOC107563807 other downstream 1671216 12760374 ~ 12762731 (+)

Expression


Co-expression Network