LOC122355629


Basic Information

Item Value
gene id LOC122355629
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 12613150 ~ 12638736 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252231.1
GGCGCGTAAAACCTCCCCGTCTGCGCTCCGGCGCTTTGGTGGTGTTCAGCGTGGAACGGCAACGTCAAACTGTCCTGTCCATTTGGAATCGAGTCTTGGTAGTAAAACCTCGTGTCTTGGATGCCCATTTTAAAGTCCGATCCTCATGGGAATTCCGACGGAGGTGTGTTTTGCAGCACCTCAGATGTACAGCACACCTGAAGAAAGCGCTGGCAGGGAGTCTGCATCCTTCTGCTTAACACACGGCAGCTGTGTTGAGGGAAGATCCCTCTCCTATACCGTGTCATTCCCCGGTGACCGCAGCAATGCCCCTGGTGACCGCCTGCTGCCCTCTTCTTGTTGAAGCTGTCGAGTGCTGAGATGTCCCAAAGTTCAATCTTGTCATGCTCAGGCATCGCTTTCTGCCACCCTCTATCCATCAACCGAGCTGTTTGTGAACCATtatgatatgtgtgtgtctgtgtgtgagcaCGCTTGTGTGCACTGCTCCCTTATTCCTGAACGCAAGATCCCAGCTGCTTCACCCACCtgatttttttacttgcatATCTGTGTAAATGAGTTGTCCAGTAAGGGTCAATGTAATTGATTCGGTTCATCCCAATGAATCACAATAGCACCCTGAAATTGACCCTTTCAACATTTTAGGGATGTTTAAGTAGATTTAtgtggattgtgtgtgtgtgtgtgtgcttgtgtgtgtgtgtctgcgtcgGACCCTGCGGGCTGGGACGTGTCACCCCTTCGTCTCGTCACTGCTAATATGAACTTGAGCATCCAGGCGTGGAGCTGTGACAGATCGGCAGACAGCCCTGCCCCCTCAGCATCCCTTCATCCCTGCTACCTATCTAGCTTGCTTAatcttaaattaatttcaggTCAAAAACGAACCGATCCCTGGCACCAGGCTATGATACCTCACCTGCCCACTGGGGATCACTGGAAGGAAGTGTAACGTCAGATTAACAAGATAGCACATTGTTGACAAGCGTGGGGATTATTTACAGCTGCGAGTCGCTTTATCACCACACGCGACTCCTTTTTTGATCTTTTAGAGAATATGTGATTAATAAACAAACCTGTGAATCGCACGTGTGGTGCTGTCAGCAAACGCAAAATATTTGTGACCTTTTAAAGTGACTCCCGATGCGTTGGGTCAAATGGTGTCGGAAGATGatgttttttgacatttttccacTCTTGACCTTTCCACTAATGTTACAGGAGATCTGTGGAGTGTTTCTGCTCAGTAGCAGTTCACGATCAGGTCTTGCATGCTGAGTTCAGGGTCGCTAACCTCACTGGCAGGTACTTAACCTTTTCACACCACTGACTCAAACACCATGAACTCTGATTTGGAGTACATAGATCTTAAGTgctatagcattttttttttttacacttaaatGTATTAAGTGAATTAAGAATcaaattatcattaatatttataaacacaatttttaatctaaattgtttttattattaagatgttaaaaattattattatttgtaagatttattaaagtattttgaCACAGGACAGTATTTCATACAGGAAGTGAGttgggagagaaagagactatttagtttttttattttattttaatttagcacattttttctgaaaaaaggCTGTAAATAATTTAGATTACTTAATAAGGTGGTGTGTAATTAAATCATGGACActgttgtatatatttgttctttcattttatttaaattttatggccactattaaactaaactaatgGAACAAATTAAAGAATCAAAGAATAAACTTGCTAtggatatatataatatatccaCTAGATACACTTTTAGGGGggtaacaaaaattaaaagcagtgtttttttttggttgtgtgATCTCAAATACTAAAGTAGCTGTTAtat

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252231.1 True 1893 lncRNA 0.41 3 12613150 12638736

Neighbor

gene id symbol gene type direction distance location
pdk2a LOC107754097,LOC107565668,LOC107568951,LOC107677886,LOC107743772,LOC103046317,LOC108426453 coding downstream 49111 12556682 ~ 12564039 (-)
LOC122355678 LOC107675002,LOC107754109,LOC107566636 coding downstream 60435 12549656 ~ 12552715 (-)
myo1d myo1d,si:ch211-94l19.4,LOC107743773,LOC107677861,LOC107675020 coding downstream 64221 12488769 ~ 12548929 (-)
psmd11b psmd11,psmd11b,LOC108426450,LOC107743775,LOC107568948,LOC107691212 coding downstream 132316 12472889 ~ 12480834 (-)
uts2r2 ogfod3,zgc:195081,LOC107743776,LOC107691211,LOC106959269 coding downstream 140943 12448036 ~ 12472207 (-)
osbpl7 osbpl7,LOC107565688,LOC107677882,LOC107743767,LOC107754093 coding upstream 15264 12654000 ~ 12665037 (-)
mrpl10 mrpl10,LOC107566794,LOC107754119 coding upstream 27379 12666115 ~ 12667979 (-)
si:ch211-194k22.8 si:ch211-194k22.8,LOC107565757,LOC107754091,LOC107743792,LOC107675005 coding upstream 46376 12685112 ~ 12689248 (-)
cbx1b cbx1b,cbx1,LOC107677876,LOC107743766,LOC107566057,LOC107563783 coding upstream 62512 12701248 ~ 12708174 (-)
ccdc189 LOC107566122,LOC107754089,LOC107675027,LOC107743779,LOC107563782,LOC107677867 coding upstream 75515 12714251 ~ 12717184 (-)
G87746 NA non-coding downstream 125755 12438750 ~ 12487395 (-)
G87695 LOC107669482,LOC107552775 non-coding downstream 266084 12344898 ~ 12347066 (-)
G87660 NA non-coding downstream 460413 12152240 ~ 12152737 (-)
G87659 NA non-coding downstream 461515 12151299 ~ 12151635 (-)
G87610 NA non-coding downstream 642326 11970529 ~ 11970824 (-)
G87860 gabrz,LOC108273489,LOC107675029,LOC107754081,LOC107565977 non-coding upstream 165960 12804696 ~ 12807646 (-)
G88003 NA non-coding upstream 727217 13365953 ~ 13368320 (-)
G88019 NA non-coding upstream 795158 13433894 ~ 13434125 (-)
G88034 nrap,LOC107755535,LOC107702452 non-coding upstream 819720 13458456 ~ 13459865 (-)
G88035 nrap,LOC107702452,LOC107755535 non-coding upstream 821409 13460145 ~ 13461245 (-)
G87608 NA other downstream 661995 11948540 ~ 11951155 (-)
G87569 NA other downstream 777538 11832879 ~ 11835612 (-)
G87489 NA other downstream 1290547 11321423 ~ 11322603 (-)
LOC122355648 cox7a3,LOC107550034,LOC107582778,LOC107749383,LOC107728726,LOC108429329,LOC108273985,LOC107700119 other downstream 1567261 11042888 ~ 11045889 (-)
cript cript,LOC107582781,LOC107728714 other downstream 1606196 11005006 ~ 11006954 (-)
prr15lb prr15lb,LOC107754107,LOC107675003,LOC107565730,LOC107743781,LOC107677864,LOC107563795 other upstream 10647 12649383 ~ 12675472 (-)
G87845 LOC107675011 other upstream 113168 12751904 ~ 12752678 (-)
LOC122355808 LOC107684141,LOC107702421,LOC107581556,LOC107684142,LOC107708119,LOC107708127 other upstream 785572 13424308 ~ 13432195 (-)
entpd1 LOC107707825,LOC107755533,LOC107581561,LOC107702455,LOC107684037,LOC107566185 other upstream 884932 13523668 ~ 13540301 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107702422,LOC107750316,LOC107566231,LOC106949585,LOC106589326 other upstream 970684 13609420 ~ 13691340 (-)

Expression


Co-expression Network