LOC122355669 (LOC107741973,LOC107661982,LOC107569001)


Basic Information

Item Value
gene id LOC122355669
gene name LOC107741973,LOC107661982,LOC107569001
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7001006 ~ 7002149 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252235.1
CTCGATAGCCACACCAACACGATGTATTGTGTTGACCTACTGAGTGTGGAATATACCTGGAAAAAagtgacagacacagtgggaGGGACACCCTCTCCCAGAGCAAGACATTCCTGCTGGGTCTACAAAAACAGGCTAGTCTACTTTGGAGGATATGGCTGCAAAACAGCCAGAGAGGTCAACAAAACCAAGAGCTTTATGGTTGATGAGGCTAGCTGGGTGAGGAGAaagattgtgaaaaaaaaatgaacagctAAAGTTGTTGTACAGTAGTAGAGTTAGTTTaccctgattttttttaatacagg
>XR_006252236.1
AGCCACACCAACACGGTGAGCTGCTTTAGGAATTATATCATCATAAAGCATCACATCTCAAAGGCAGAGTAACAGATGTATTGTGTTGACCTACTGAGTGTGGAATATACCTGGAAAAAagtgacagacacagtgggaGGGACACCCTCTCCCAGAGCAAGACATTCCTGCTGGGTCTACAAAAACAGGCTAGTCTACTTTGGAGGATATGGCTGCAAAACAGCCAGAGAGGTCAACAAAACCAAGAGCTTTATGGTTGATGAGGCTAGCTGGGTGAGGAGAaagattgtgaaaaaaaaatgaacagctAAAGTTGTTGTACAGTAGTAGAGTTAGTTTaccctgattttttttaatacagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252235.1 False 308 lncRNA 0.43 3 7001006 7002149
XR_006252236.1 True 362 lncRNA 0.42 3 7001006 7002143

Neighbor

gene id symbol gene type direction distance location
LOC122355417 adprh,LOC108411014,LOC108274007,LOC105894051,LOC107726130,LOC106579059,LOC107571852 coding downstream 720658 6197482 ~ 6280348 (-)
neurod2 LOC107571318,LOC107676581,LOC107732719,LOC107701796,LOC107568320 coding downstream 978850 6017991 ~ 6022156 (-)
mylpfb mylpfb,LOC107571443,LOC107674915,LOC108443170,LOC102793118,LOC101482131,LOC108274226,LOC102196412 coding downstream 1122785 5875085 ~ 5878221 (-)
pkmyt1 pkmyt1 coding downstream 1238395 5748277 ~ 5762611 (-)
sult1st6 sult1st6,LOC107674799,LOC107708285,LOC107574469 coding downstream 1254476 5736592 ~ 5746530 (-)
hexim1 hexim1,LOC107733802,LOC107661096,LOC107662567,LOC107561639,LOC107751667,LOC107576140 coding upstream 169247 7171396 ~ 7173368 (-)
acbd4 LOC107661095,LOC107733800,LOC107662569 coding upstream 172469 7174618 ~ 7182834 (-)
kcnj19b si:dkey-100n10.2,LOC107584158,LOC107758432,LOC107661094,LOC108424892,LOC107727700,LOC108273498 coding upstream 357234 7359383 ~ 7365015 (-)
hectd2 hectd2,LOC107584154,LOC107758436,LOC107594154,LOC107753452 coding upstream 502567 7504716 ~ 7521406 (-)
pcgf5b pcgf5b,LOC107584148,LOC107594155,LOC107669177,LOC107753439,LOC107758437,LOC107704022,LOC108410714 coding upstream 524927 7527076 ~ 7538565 (-)
G86091 NA non-coding downstream 35595 6965090 ~ 6965411 (-)
G86048 LOC101886504,LOC101886427 non-coding downstream 331542 6668927 ~ 6669464 (-)
G86032 NA non-coding downstream 477349 6522913 ~ 6523657 (-)
G86030 NA non-coding downstream 478427 6521826 ~ 6522579 (-)
G86026 NA non-coding downstream 557309 6443328 ~ 6443697 (-)
G86094 LOC107569001,LOC107741973 non-coding upstream 111 7002260 ~ 7002931 (-)
G86096 NA non-coding upstream 5677 7007826 ~ 7009113 (-)
G86098 NA non-coding upstream 9054 7011203 ~ 7011430 (-)
G86184 si:dkeyp-94b4.1,LOC107675649,LOC107758427,LOC107561632 non-coding upstream 281737 7283886 ~ 7285998 (-)
G86185 NA non-coding upstream 284261 7286410 ~ 7287752 (-)
G86049 LOC101886504,LOC101886427 other downstream 329759 6670319 ~ 6671247 (-)
LOC122355418 pnmt,LOC107571312,LOC107676565 other downstream 922938 6051168 ~ 6078068 (-)
G85930 LOC107711793,LOC107755027 other downstream 988895 5990913 ~ 6012111 (-)
G85925 NA other downstream 1013226 5984989 ~ 5987780 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other downstream 1574495 5423084 ~ 5426511 (-)
G86108 NA other upstream 101731 7103880 ~ 7104218 (-)
G86203 NA other upstream 386087 7388236 ~ 7388910 (-)
cpped1 cpped1,LOC107584109,LOC107669238,LOC107554009 other upstream 1332255 8334404 ~ 8359992 (-)
LOC122355061 tnfrsf17,LOC107554040,LOC107692075,LOC107690067,LOC107584106,LOC107734209 other upstream 1509254 8511403 ~ 8513265 (-)
G86783 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 other upstream 1608403 8610552 ~ 8612445 (-)

Expression


Co-expression Network