lrmda (c13h10orf11,cunh10orf11,c3h10orf11,cssa18h10orf11,LOC107747465,LOC107678567,LOC107708444,LOC105909757,LOC103041229,LOC107582503)


Basic Information

Item Value
gene id lrmda
gene name c13h10orf11,cunh10orf11,c3h10orf11,cssa18h10orf11,LOC107747465,LOC107678567,LOC107708444,LOC105909757,LOC103041229,LOC107582503
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 687409 ~ 931005 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU132787
tgaggtgCATGTGCATGTCGTGTCTGAAGTTTGTGTGTTGCGGGGGCAGTTGTTGCAGTGCCGGAGCCTGGAGGAGCTGTGAAAGAAAGAGGTAATGAGctttgctttatttcattctttctctGGAGGGAGAGAGCAAAGAAAGACAGCAGCTCTGGCAGTGAAATAGGAGGAGGTGGATGCATGTATGTGCGAGAGAGGAGTCAACAACTTTCTCCAGTCTTTTTGATTGTTTCCTCATGCGGGTTTTGGACCTATTCGcgttattttaatgatttagtttCTTTGTATGTTTagaaaaatcaattaaaaacatccATAATGTGctttggaaaaggagtttacGAGCAGTGGCCAAAAAGTTGGGCAAATATTTGGAAGATCAACTCCATTAAGTACAGTGAGGGTGATGTGATTTATGTGCATCCAATTTATTTTGCCTTGCgttacgttttatttatttctttttctttttctttttttaacaatattacattcCAAGTTGATCTTATGCACTGAATCTGTGTAAGACTAGCCAAAGATCCACCGCAAACAAAATAagtttgtattttaaacaagaagttaaaaagatttgactgtttttgatTTGGATTTTGAGATTAGTTTGATTGTTGTATGAATCTTCTTTTTATGTGTAGTTGACATGAAATGTAAAAGTGTCCATATACTGCTCCATATCCTAAAACTGCTACAGACACAGTTCTCGTACTTTTACTGCTTCAGTGCAAATGAAaccattaatatattatgtatattatatattatgcatttaaaatatgcattgctatATATCA
>XM_043256213.1
GGCAGCAGTGCCACTTCCACATTTTCATGGAAACATCCTCGGGAAGATGTTATGAGCAGCTGAAGCAGATTTGAGCAATTGAACAAGTGGCGCGTGCTTCCGTCCCAGATCAGCTGACACGAGCACGCGGAAGAAGTGAAGCTCCAGCCGGAGAGTAGTTTAAAAGTTTATCTTGAAAACCTAAACAACCCGTTTCAGTCTTATGAGCTGAAAAAACGTTTGTGGTGGTCCTCGTTTGATGCTGCTCTGCTTCTGAACTGTCATTTGGCTACAATGGCGTACAACGAGTCAGTGGTTGTAGTGAATGGGAGTCAGGTGTCCTGCATTGGCCATGATTGGGAAGACATTCCAGATTTTCTTGGGCCAAAGTATGGAGAAATGGCAAGAAGATTAGATCTCAGCTTCAACCAGCTGAGGTCACTGACAGGCCTGAAAGCGTTCAGCCAACTGGAAGAGCTGATTGTGGACAACAATCTTCTCGGAAATGACCTCTGGTTGCCCAGGTTACCACGGCTCCATACCCTGACGCTCAATAAGAACCAATTCACCGACATCGAGGCCCTGTTGGAGCATTTGGCGGAAGTGACGTCAGCGCTGGAATACCTGAGCCTTTTGGGAAATGAGGCCTGTCCCAACCAACTGGTCAGCATGGATAAAGATGAAGACGACTATCAGAGATACAGgtaCTTTGTGCTACATAAGCTGACGAAGTTGAAGTTCCTGGACACCAGGAGAGTGACCCAGTGGGAGCGGTCAGAGGCCGAAGCACGTGGAGCTTTCATGAAGGTGGTCAAGCCGAAAAATGACCAAGACGCCGCCAGCGATGTGAGATCCGAATCCACTGCTACCCCATACACCCCGCTGCCACGAGGATCCAAAGACGCCAAGAACCACAAAGGGGTTTTCACCAAGTGTCGTTATGTCTACTACGGCAAGCACTCAGAGGGCAATCGATTCATCCGCAATGACCAGCTCTGACTGACAGACGGGTCAGTGGATACACACACGAGGGGGCTTTACAAAGATATCCTGcgcatattattataaatatacatgttgcCACATGCATTTTAAGCAGCCAAACACAGCCCTCTAGTGCCGTCTGCTGAGTGTGCCTTCCCTGCCACCTCCCATCGCTCTCGCTCCGTCTGAGCAGTGCCATCCAGATTGACATGATTGCCTTTAAGCAGCCCTGCTATGCCGCggtgacagacacacacgcggCCGAGCGCTCGTCCTGACAGCCGCGGCTCCATGATGGATTGCCTGGTCCAACCGCTGCTCTCCCCAGGTCAAAGGTCCCACCTGAGGCTTCGGGCTGCCCACACGGAAGCCCAGGATGAGCTCCTCTCAAAGTCAAAGCTAAAGTTAAAGAGAGAGATCAGGGGAAAGTGTTGCTTTTACAATATAGCCACCGTTTAAAGGTTTTGTAACCATATCATTTTCTGTACATTTACTGAAGGCAGAACGTCAGTTTAAGTCATTGTTTTCTCCAGATAGCGAAAAGGgctaataaatgtaaacacattttatttcatttttagcagGCAAGTGCTCACCAGCAGCAGgcatttatatacatgtgtgtctgtgtatatatatatatatatat
>XM_043256215.1
CGCTGGCAGCAGTGCCACTTCCACATTTTCATGGAAACATCCTCGGGAAGATGTTATGAGCAGCTGAAGCAGATTTGAGCAATTGAACAAGTGGCGCGTGCTTCCGTCCCAGATCAGCTGACACGAGCACGCGGAAGAAGTGAAGCTCCAGCCGGAGAGTAGTTTAAAAGTTTATCTTGAAAACCTAAACAACCCGTTTCAGTCTTATGAGCTGAAAAAACGTTTGTGGTGGTCCTCGTTTGATGCTGCTCTGCTTCTGAACTGTCATTTGGCTACAATGGCGTACAACGAGTCAGTGGTTGTAGTGAATGGGAGTCAGGTGTCCTGCATTGGCCATGATTGGGAAGACATTCCAGATTTTCTTGGGCCAAAGTATGGAGAAATGGCAAGAAGATTAGATCTCAGCTTCAACCAGCTGAGGTCACTGACAGGCCTGAAAGCGTTCAGCCAACTGGAAGAGCTGATTGTGGACAACAATCTTCTCGGAAATGACCTCTGGTTGCCCAGGTTACCACGGCTCCATACCCTGACGCTCAATAAGAACCAATTCACCGACATCGAGGCCCTGTTGGAGCATTTGGCGGAAGTGACGTCAGCGCTGGAATACCTGAGCCTTTTGGGAAATGAGGCCTGTCCCAACCAACTGGTCAGCATGGATAAAGATGAAGACGACTATCAGAGATACAGgtaCTTTGTGCTACATAAGCTGACGAAGTTGAAGTTCCTGGACACCAGGAGAGTGACCCAGTGGGAGCGGTCAGAGGCCGAAGCACGTGGAGCTTTCATGAAGGTGGTCAAGCCGAAAAATGACCAAGACGCCGCCAGCGATGTGAGATCCGAATCCACTGCTACCCCATACACCCCGCTGCCACGAGGATCCAAAGACGCCAAGAACCACAAAGGGGTTTTCACCAAGTGTCGTTATGTCTACTACGGCAAGCACTCAGAGGGCAATCGATTCATCCGCAATGACCAGCTCTGACTGACAGACGGAAATGCCGCTGCGAGGCCCTCACAGGCTCTTGACTCCGTGgcatgtgtatgtttgtgtgtttgtgaggtgCATGTGCATGTCGTGTCTGAAGTTTGTGTGTTGCGGGGGCAGTTGTTGCAGTGCCGGAGCCTGGAGGAGCTGTGAAAGAAAGAGGTAATGAGctttgctttatttcattctttctctGGAGGGAGAGAGCAAAGAAAGACAGCAGCTCTGGCAGTGAAATAGGAGGAGGTGGATGCATGTATGTGCGAGAGAGGAGTCAACAACTTTCTCCAGTCTTTTTGATTGTTTCCTCATGCGGGTTTTGGACCTATTCGcgttattttaatgatttagtttCTTTGTATGTTTagaaaaatcaattaaaaacatccATAATGTGctttggaaaaggagtttacGAGCAGTGGCCAAAAAGTTGGGCAAATATTTGGAAGATCAACTCCATTAAGTACAGTGAGGGTGATGTGATTTATGTGCATCCAATTTATTTTGCCTTGCgttacgttttatttatttctttttctttttctttttttaacaatattacattcCAAGTTGATCTTATGCACTGAATCTGTGTAAGACTAGCCAAAGATCCACCGCAAACAAAATAagtttgtattttaaacaagaagttaaaaagatttgactgtttttgatTTGGATTTTGAGATTAGTTTGATTGTTGTATGAATCTTCTTTTTATGTGTAGTTGACATGAAATGTAAAAGTGTCCATATACTGCTCCATATCCTAAAACTGCTACAGACACAGTTCTCGTACTTTTACTGCTTCAGTGCAAATGAAaccattaatatattatgtatattatatattatgcatttaaaatatgcattgctatATATCATAACgattatttgcatccaaaatatgtttttgctcaagtatttattat
>XM_043256216.1
TCTGTGCCGCTGGCAGCAGTGCCACTTCCACATTTTCATGGAAACATCCTCGGGAAGATGTTATGAGCAGCTGAAGCAGATTTGAGCAATTGAACAAGTGGCGCGTGCTTCCGTCCCAGATCAGCTGACACGAGCACGCGGAAGAAGTGAAGCTCCAGCCGGAGAGTAGTTTAAAAGTTTATCTTGAAAACCTAAACAACCCGTTTCAGTCTTATGAGCTGAAAAAACGTTTGTGGTGGTCCTCGTTTGATGCTGCTCTGCTTCTGAACTGTCATTTGGCTACAATGGCGTACAACGAGTCAGTGGTTGTAGTGAATGGGAGTCAGGTGTCCTGCATTGGCCATGATTGGGAAGACATTCCAGATTTTCTTGGGCCAAAGTATGGAGAAATGGCAAGAAGATTAGATCTCAGCTTCAACCAGCTGAGGTCACTGACAGGCCTGAAAGCGTTCAGCCAACTGGAAGAGCTGATTGTGGACAACAATCTTCTCGGAAATGACCTCTGGTTGCCCAGGTTACCACGGCTCCATACCCTGACGCTCAATAAGAACCAATTCACCGACATCGAGGCCCTGTTGGAGCATTTGGCGGAAGTGACGTCAGCGCTGGAATACCTGAGCCTTTTGGGAAATGAGGCCTGTCCCAACCAACTGGTCAGCATGGATAAAGATGAAGACGACTATCAGAGATACAGgtaCTTTGTGCTACATAAGCTGACGAAGTTGAAGTTCCTGGACACCAGGAGAGTGACCCAGTGGGAGCGGTCAGAGGCCGAAGCACGTGGAGCTTTCATGAAGGTGGTCAAGCCGAAAAATGACCAActcgCAACGGCGGCGAACCAATCATTTTGCCACGCTTCAGGTATCCCAGATAAATGAATAGTCTTTTGAGTG

Function

NR:

description
PREDICTED: leucine-rich repeat-containing protein C10orf11 homolog

GO:

id name namespace
GO:0030318 melanocyte differentiation biological_process

KEGG:

id description
K24399 LRMDA; leucine-rich melanocyte differentiation-associated protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU132787 False 815 lncRNA 0.35 1 687457 688271
XM_043256213.1 False 1612 mRNA 0.49 7 688767 930994
XM_043256215.1 True 1919 mRNA 0.44 8 687409 930998
XM_043256216.1 False 893 mRNA 0.49 6 732492 931005

Neighbor

gene id symbol gene type direction distance location
zgc:110045 zgc:110045,LOC107582498,LOC107721227,LOC107708438,LOC107678543,LOC108444131,LOC107698144 coding downstream 390454 279249 ~ 296955 (-)
vwc2 vwc2,LOC107589538,LOC107678488,LOC107698155,LOC107721217,LOC107582546 coding downstream 410494 250517 ~ 276915 (-)
ikzf1 ikzf1,LOC107721232,LOC107708437,LOC107698154 coding downstream 465530 197645 ~ 221879 (-)
ttl ttl,LOC107698152,LOC107678537,LOC107721225 coding downstream 497070 184476 ~ 190339 (-)
bag5 LOC107721222,LOC107698150,LOC107589542,LOC107708429,LOC107678581 coding downstream 540423 135035 ~ 146986 (-)
vdac2 vdac2,LOC107690181,LOC108444242,LOC107582506,LOC107747461 coding upstream 91109 1022114 ~ 1029323 (-)
march8 march8,LOC107690179,LOC107708446 coding upstream 102342 1033347 ~ 1120609 (-)
zfand4 zfand4,LOC107582507,LOC107690178,LOC107678595,LOC107747469,LOC107589528 coding upstream 190523 1121528 ~ 1137833 (-)
washc2c LOC107582509,LOC107747458,LOC107678570,LOC107708449,LOC107690188 coding upstream 207103 1138108 ~ 1153163 (-)
alox5a alox5a,alox5,LOC107747471,LOC107690200,LOC107582511,LOC107589586,LOC107678516,LOC107708393 coding upstream 222829 1153834 ~ 1161491 (-)
G89662 NA non-coding downstream 9810 655858 ~ 677599 (-)
G89598 NA non-coding downstream 367349 317508 ~ 320060 (-)
LOC122356996 NA non-coding upstream 1806 932811 ~ 934723 (-)
G89744 NA non-coding upstream 74998 1006003 ~ 1006204 (-)
G89880 NA non-coding upstream 317684 1248689 ~ 1249735 (-)
G89870 si:ch211-198a12.6,LOC107747450,LOC107690167,LOC107589522,LOC107582518,LOC107678580,LOC108263519,LOC108444387,LOC103030417 non-coding upstream 338857 1269862 ~ 1275411 (-)
LOC122356493 NA non-coding upstream 512247 1443252 ~ 1444916 (-)
LOC122356753 LOC107708390,LOC107678530,LOC107589588,LOC107698143 other downstream 448050 223958 ~ 239359 (-)
G89543 NA other downstream 510089 123194 ~ 177320 (-)
G89537 LOC107698151,LOC107582543,LOC107678539,LOC107708436 other downstream 619533 67327 ~ 67876 (-)
LOC122356184 fam63b,LOC107750498,LOC107585989,LOC107670767,LOC107700433 other downstream 628976 36974 ~ 58433 (-)
LOC122356752 tcf4,LOC107675755,LOC107564475 other downstream 655204 17866 ~ 32205 (-)
si:dkey-228d14.5 si:dkey-228d14.5,LOC107747455,LOC107582513,LOC107708394,LOC107589525,LOC107678589,LOC107690177 other upstream 281865 1212870 ~ 1288282 (-)
LOC122356439 LOC107747448,LOC107690165,LOC107678593,LOC107582517,LOC107576986,LOC107708380 other upstream 623225 1554230 ~ 1557047 (-)
LOC122356758 ccdc88a,LOC107571560,LOC107701441,LOC107570323,LOC107695193 other upstream 753444 1684449 ~ 1692354 (-)
G90161 tp53bp2,LOC107582030,LOC107705014,LOC107742808 other upstream 1220832 2151837 ~ 2245078 (-)
G90304 NA other upstream 1653191 2584196 ~ 2585331 (-)

Expression


Co-expression Network