G89817 (LOC107678592,LOC107708458,LOC107690199,LOC107690165,LOC107747448,LOC107678593)


Basic Information

Item Value
gene id G89817
gene name LOC107678592,LOC107708458,LOC107690199,LOC107690165,LOC107747448,LOC107678593
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 1546927 ~ 1561464 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU132940
ggtttatttgatttttaaattacgcacattcacaaacacatgcCTAGATTAATGATCTAAAATAGCTTTCCTGAGGCGTATCCAGAACCTCATGTTTCTCAAAGGGTCTCTGCTCCACTTTAGGTACGTGTTCTTTTTCAGATGCTTATGAAGTCCAAACACTTTCTTAGTCCTCCTCTCTTCCACATCTTCcagaatgatgatgatgatgttggcACTGCGTTCCATCATAAAGCGAGACTGAGCTAGTTCAAACTCAAAGCGACACCAGGCACTATCAATGAAGTGTTGAGACACCACCACAATGATTTTACGACTGCCCATTATTCCTTCATCGATAATGTTGGAGGCGATGGACTTCCCTGCTTGAAAGTCCCGCATATGAAGGCAAAGCTGAATAGGTGGTATACCGTTCTCCAGATTCTCCATCAGTTCATTCATGACCCAGACTGTTTGAAAGTCACTGCTTTATGTggcatctgaaaaaaaatacattaaatttaatgtaatttat

Function

NR:

description
PREDICTED: toll-like receptor 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU132940 True 514 lncRNA 0.40 3 1546927 1561464

Neighbor

gene id symbol gene type direction distance location
pdzd7a pdzd7a,pdzd7,LOC107690160,LOC107570534,LOC107678494 coding upstream 168974 1357268 ~ 1377953 (+)
zgc:154058 zgc:154058,LOC107733751,LOC107582519,LOC107690163,LOC107570530,LOC107708463,LOC103041715,LOC108441772,LOC108263524 coding upstream 219142 1299234 ~ 1327785 (+)
LOC122356485 LOC107690198,LOC107582551,LOC107733679 coding upstream 249994 1292045 ~ 1296933 (+)
LOC122356446 LOC107690199,LOC107678592,LOC107708458 coding upstream 255913 1288427 ~ 1291014 (+)
tlr4al LOC107747448,LOC107690165,LOC107678593,LOC107582517,LOC107576986 coding upstream 263240 1280906 ~ 1283687 (+)
prorsd1 LOC107701441,LOC107571560 coding downstream 121786 1683250 ~ 1685179 (+)
LOC122356760 pim3,LOC107732271 coding downstream 207269 1768733 ~ 1770226 (+)
foxg1d foxg1,LOC107709474,LOC107680282,LOC107565904,LOC108443822 coding downstream 254354 1815818 ~ 1818092 (+)
irf1a LOC107571076,LOC107725011,LOC107680285,LOC107565919 coding downstream 299467 1860931 ~ 1864358 (+)
fbxo28 fbxo28,LOC107753723,LOC107742812,LOC107701582,LOC107558225 coding downstream 478018 2039482 ~ 2046270 (+)
G89855 NA non-coding upstream 7573 1538302 ~ 1539354 (+)
G89844 sema4ga,LOC107733683,LOC107708465,LOC107678493,LOC107690158,LOC107582524 non-coding upstream 96097 1450365 ~ 1450830 (+)
G89843 NA non-coding upstream 96984 1449046 ~ 1449943 (+)
G89842 NA non-coding upstream 99322 1446192 ~ 1447605 (+)
G89821 mat1a,LOC107582520,LOC107570529,LOC107733750,LOC107678534,LOC107708460 non-coding upstream 211793 1331838 ~ 1335134 (+)
G89815 NA non-coding downstream 1078 1562542 ~ 1562953 (+)
G89931 NA non-coding downstream 29971 1591435 ~ 1666092 (+)
G89942 NA non-coding downstream 72200 1633664 ~ 1634590 (+)
LOC122356499 NA non-coding downstream 112259 1673723 ~ 1675335 (+)
LOC122356501 NA non-coding downstream 116796 1678260 ~ 1679870 (+)
G89846 NA other upstream 76792 1469405 ~ 1470135 (+)
selenou1a fam213aa,fam213a,LOC107690162,LOC107733773,LOC107582522 other upstream 201064 1342096 ~ 1345863 (+)
G89770 LOC107582509,LOC107690188,LOC107747458 other upstream 406732 1139159 ~ 1140195 (+)
comtd1 comtd1,LOC107690183,LOC107582505,LOC107747463,LOC107678519 other upstream 535680 1008268 ~ 1011247 (+)
G89631 LOC107698159,LOC107747466 other upstream 869326 380964 ~ 677601 (+)
LOC122356486 march8,LOC107690179,LOC107582508,LOC107708446 other downstream 19894 1581358 ~ 1613330 (+)
mpc1 mpc1,LOC107693783,LOC107725004,LOC107565920,LOC107709408,LOC107571070 other downstream 278871 1840335 ~ 1842108 (+)
G90010 LOC107676803 other downstream 310720 1872184 ~ 1872591 (+)
lgi1a lgi1a,lgi3,LOC107565913,LOC107701579,LOC107753733,LOC108260544 other downstream 428408 1989872 ~ 1997310 (+)
tp53bp2a tp53bp2,LOC107582030,LOC107705014,LOC107558217,LOC107742808 other downstream 591958 2153422 ~ 2166028 (+)

Expression


Co-expression Network