G89942


Basic Information

Item Value
gene id G89942
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 1633664 ~ 1634590 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU133149
TGGAGATGCtgctttcttttccttttttCCTGGGTTCAAAGGTCACTGGTGCATCACTGAATTTAGGGCGATCTCGCATGGATCCATCACTCCTCATTGACACACAGCTGGGCTCTGGAGATGCTTCTCTCAGGTACTGAGTGTGATCAACATCCTCCTCTTTCCTCTCCTCATAGAAACTCATTTTACAACCAGTCTTCTTCTGCTTCTCCATAAAGATTTCTGCTCTGCATTTCGACATACAGTGAAACACAACTGTCTACagacaaactgaaaaacaaagcatttaccTTAATATAAATTTGTAGTCTACACTGGAGTCCAAAATGGAATTAACTGAttacaattacacacacacggTTACAACAATATATGCCCTCACAGGAATATTAGCAGTATTGGTTTGTTCTCAACTACAGTACCCATGACTCAGTTTGAACATTTAAGCTCCAGGAGGCCCTCTGTTTAGTGTGCTGTCTTGAGCTGGGTAACAGTTCAGCGTTTCAGCTCCTGTTCATCCTGTCTAtcagtatgtttttgttttattgtgatgTTGGCTGCCTGCCTTTACcctgtgtctgtgtttgactGTGTACTCTGATCTGACACATAACCTGCTTGTCTGCATTCTTCAACTGTGACATCAGTGTATCTAGGACTGAAATTGTATCCCAAAAACATGTCTGAAAATTGAACAGTATCAAAGATACACATTTCTAGTAATTGTGCAGTTTATACTCATGTAGTTTTAGAATGTTTTGGAATATTTGTCCTGTTTCCAAATTTGTCACCACTGAAAAACTTTACTGACCAATCAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133149 True 819 lncRNA 0.40 2 1633664 1634590

Neighbor

gene id symbol gene type direction distance location
pdzd7a pdzd7a,pdzd7,LOC107690160,LOC107570534,LOC107678494 coding upstream 255711 1357268 ~ 1377953 (+)
zgc:154058 zgc:154058,LOC107733751,LOC107582519,LOC107690163,LOC107570530,LOC107708463,LOC103041715,LOC108441772,LOC108263524 coding upstream 305879 1299234 ~ 1327785 (+)
LOC122356485 LOC107690198,LOC107582551,LOC107733679 coding upstream 336731 1292045 ~ 1296933 (+)
LOC122356446 LOC107690199,LOC107678592,LOC107708458 coding upstream 342650 1288427 ~ 1291014 (+)
tlr4al LOC107747448,LOC107690165,LOC107678593,LOC107582517,LOC107576986 coding upstream 349977 1280906 ~ 1283687 (+)
prorsd1 LOC107701441,LOC107571560 coding downstream 48660 1683250 ~ 1685179 (+)
LOC122356760 pim3,LOC107732271 coding downstream 134143 1768733 ~ 1770226 (+)
foxg1d foxg1,LOC107709474,LOC107680282,LOC107565904,LOC108443822 coding downstream 181228 1815818 ~ 1818092 (+)
irf1a LOC107571076,LOC107725011,LOC107680285,LOC107565919 coding downstream 226341 1860931 ~ 1864358 (+)
fbxo28 fbxo28,LOC107753723,LOC107742812,LOC107701582,LOC107558225 coding downstream 404892 2039482 ~ 2046270 (+)
G89815 NA non-coding upstream 70711 1562542 ~ 1562953 (+)
G89817 LOC107678592,LOC107708458,LOC107690199,LOC107690165,LOC107747448,LOC107678593 non-coding upstream 72200 1546927 ~ 1561464 (+)
G89855 NA non-coding upstream 94310 1538302 ~ 1539354 (+)
G89844 sema4ga,LOC107733683,LOC107708465,LOC107678493,LOC107690158,LOC107582524 non-coding upstream 182834 1450365 ~ 1450830 (+)
G89843 NA non-coding upstream 183721 1449046 ~ 1449943 (+)
LOC122356499 NA non-coding downstream 39133 1673723 ~ 1675335 (+)
LOC122356501 NA non-coding downstream 43670 1678260 ~ 1679870 (+)
G89973 ccdc88a,LOC107570323,LOC107695193 non-coding downstream 55556 1690146 ~ 1692411 (+)
G89974 NA non-coding downstream 57845 1692435 ~ 1693121 (+)
G89957 NA non-coding downstream 66988 1701578 ~ 1728151 (+)
LOC122356486 march8,LOC107690179,LOC107582508,LOC107708446 other upstream 20334 1581358 ~ 1613330 (+)
G89846 NA other upstream 163529 1469405 ~ 1470135 (+)
selenou1a fam213aa,fam213a,LOC107690162,LOC107733773,LOC107582522 other upstream 287801 1342096 ~ 1345863 (+)
G89770 LOC107582509,LOC107690188,LOC107747458 other upstream 493469 1139159 ~ 1140195 (+)
comtd1 comtd1,LOC107690183,LOC107582505,LOC107747463,LOC107678519 other upstream 622417 1008268 ~ 1011247 (+)
mpc1 mpc1,LOC107693783,LOC107725004,LOC107565920,LOC107709408,LOC107571070 other downstream 205745 1840335 ~ 1842108 (+)
G90010 LOC107676803 other downstream 237594 1872184 ~ 1872591 (+)
lgi1a lgi1a,lgi3,LOC107565913,LOC107701579,LOC107753733,LOC108260544 other downstream 355282 1989872 ~ 1997310 (+)
tp53bp2a tp53bp2,LOC107582030,LOC107705014,LOC107558217,LOC107742808 other downstream 518832 2153422 ~ 2166028 (+)
cutc cutc other downstream 541419 2176009 ~ 2180829 (+)

Expression


Co-expression Network