G89973 (ccdc88a,LOC107570323,LOC107695193)


Basic Information

Item Value
gene id G89973
gene name ccdc88a,LOC107570323,LOC107695193
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 1690146 ~ 1692411 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU133200
CTAggaattttattacatatttatggaGAACATGAAAGTGAGGAGAACTGAACGGATCGCTCTCATTCAAACGGAGAGAAACTGAGAAACACCAAACAAACTACCgtatataaaaaatgctaaatatgacAAACAATGCAATGGATCATGTGAAAATTGATTGAACATTTTATGGCCTTCCACagacaatataaatacatataaatacatttagagcaCTTAGTGATTGCTATCAGGATGTGAAGAGACGCTCGATAAagcataaaacaacaaaacgttTCTGACCCAAATCACCTTCCCTGCCTTCGTTTAGTGAGGAGATGTCTGTTGATGCCGTTTAAAAGGGTCATGACACGAGAAATCACGCTCCCTTGGTCTGTGTACGCTGAACACTTCCTGCAAGTTACATAGcttcaaatgttttcagtaaAAAGCATTTACGCAATAATCCTCGGAAAACACGCCTCCAGAGCGGCACAGGCCCCGCCCACCGGCGTTCGGTCACGCCAAAAGATAACAGAAGTCTCGTCTACACTGCACACGGCATACAGACGAGTCTGGTTTAAATATCTTTGTTCTCATATCAGAAGGATCTCAGCGTAAGGAAGAAGCCGATAGTTTCTACTGAATGGCACCCATTGACTGGAGTGCTTTTACACATCAAGAACatgttaaagtaataaaaagccATGTCGTGACCCCTTTAAGGCTAGGTTTGgttgtgatgatgatgatgagcaTGAGTGAGGAGGAAGAGTCTGCTGAGGATGAGGACACTCACCGTGTGAATTCAGGACAGACTCTGAGCTCCGCCTCTGCTCTTAGACTTCCTGTTTTCCTGTAACACTTCCACATCTGGGGGCGTGCGGGCGCCGGGTCCACCAGCACGGGCTGACGGCTGTCCTTGGAGAGCAGCTCGTGGATGCTGGTGCGGCGCACCGAGCCCTCGGCCGTGGAGATGACGCTGCTGGCGCGGGGCAGCCCGGCGGCCGTGTCCAGACGCTCCGACAGCGACGCCGACGAGGCCTTGCTCTGCGCAGACAGACCGGCTCGGGGCGGCGCCGACCCTCTGGCCCGGGTGCTCTCGGCCTTGCGCAGGCTGGGGCGGCCCGGCTGACCGGCTCCTGCTGAGGCCTTACCGCTGGACGAGCGCAGGATGCCCCGGCTCTTCACACGCTCTCTGGACACCGCTCCGGACGCTGAGAGACCGGCCTGCGCAGGGACAGGAAACACTGAGAACGGAGCAGGATCCACGCCGCAACATATCTGCTAGcTTTGGAACGTTTGGTGTCCACTGACTGGTCTCCCACAACCTCATGATCTTCAATGTTTGACCTactcaatgtttatttttcttaaaaagtgACGGTTTCAC
>TU133201
CTAggaattttattacatatttatggaGAACATGAAAGTGAGGAGAACTGAACGGATCGCTCTCATTCAAACGGAGAGAAACTGAGAAACACCAAACAAACTACCgtatataaaaaatgctaaatatgacAAACAATGCAATGGATCATGTGAAAATTGATTGAACATTTTATGGCCTTCCACagacaatataaatacatataaatacatttagagcaCTTAGTGATTGCTATCAGGATGTGAAGAGACGCTCGATAAagcataaaacaacaaaacgttTCTGACCCAAATCACCTTCCCTGCCTTCGTTTAGTGAGGAGATGTCTGTTGATGCCGTTTAAAAGGGTCATGACACGAGAAATCACGCTCCCTTGGTCTGTGTACGCTGAACACTTCCTGCAAGTTACATAGcttcaaatgttttcagtaaAAAGCATTTACGCAATAATCCTCGGAAAACACGCCTCCAGAGCGGCACAGGCCCCGCCCACCGGCGTTCGGTCACGCCAAAAGATAACAGAAGTCTCGTCTACACTGCACACGGCATACAGACGAGTCTGGTTTAAATATCTTTGTTCTCATATCAGAAGGATCTCAGCGTAAGGAAGAAGCCGATAGTTTCTACTGAATGGCACCCATTGACTGGAGTGCTTTTACACATCAAGAACatgttaaagtaataaaaagccATGTCGTGACCCCTTTAAGGCTAGGTTTGgttgtgatgatgatgatgagcaTGAGTGAGGAGGAAGAGTCTGCTGAGGATGAGGACACTCACCGTGTGAATTCAGGACAGACTCTGAGCTCCGCCTCTGCTCTTAGACTTCCTGTTTTCCTGTAACACTTCCACATCTGGGGGCGTGCGGGCGCCGGGTCCACCAGCACGGGCTGACGGCTGTCCTTGGAGAGCAGCTCGTGGATGCTGGTGCGGCGCACCGAGCCCTCGGCCGTGGAGATGACGCTGCTGGCGCGGGGCAGCCCGGCGGCCGTGTCCAGACGCTCCGACAGCGACGCCGACGAGGCCTTGCTCTGCGCAGACAGACCGGCTCGGGGCGGCGCCGACCCTCTGGCCCGGGTGCTCTCGGCCTTGCGCAGGCTGGGGCGGCCCGGCTGACCGGCTCCTGCTGAGGCCTTACCGCTGGACGAGCGCAGGATGCCCCGGCTCTTCACACGCTCTCTGGACACCGCTCCGGACGCTGAGAGACCGGCCTGCGCAGGGACAGGAAACACTGAGAACGGAGCAGGATCCACGCCGCAACATATCTGCTAGgtatttttctaattattacaTCACATGTGTcagattttaataagaaattggtcactctcg

Function

symbol description
ccdc88a Enables several functions, including GTPase regulator activity; growth factor receptor binding activity; and protein kinase binding activity. Involved in several processes, including maintenance of protein location in plasma membrane; positive regulation of cellular component biogenesis; and positive regulation of protein localization to cilium. Located in several cellular components, including Golgi apparatus; lamellipodium; and microtubule organizing center.

NR:

description
PREDICTED: LOW QUALITY PROTEIN: girdin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133200 True 1375 lncRNA 0.51 3 1690146 1692411
TU133201 False 1333 lncRNA 0.51 2 1690146 1692045

Neighbor

gene id symbol gene type direction distance location
prorsd1 LOC107701441,LOC107571560 coding upstream 4967 1683250 ~ 1685179 (+)
pdzd7a pdzd7a,pdzd7,LOC107690160,LOC107570534,LOC107678494 coding upstream 312193 1357268 ~ 1377953 (+)
zgc:154058 zgc:154058,LOC107733751,LOC107582519,LOC107690163,LOC107570530,LOC107708463,LOC103041715,LOC108441772,LOC108263524 coding upstream 362361 1299234 ~ 1327785 (+)
LOC122356485 LOC107690198,LOC107582551,LOC107733679 coding upstream 393213 1292045 ~ 1296933 (+)
LOC122356446 LOC107690199,LOC107678592,LOC107708458 coding upstream 399132 1288427 ~ 1291014 (+)
LOC122356760 pim3,LOC107732271 coding downstream 76322 1768733 ~ 1770226 (+)
foxg1d foxg1,LOC107709474,LOC107680282,LOC107565904,LOC108443822 coding downstream 123407 1815818 ~ 1818092 (+)
irf1a LOC107571076,LOC107725011,LOC107680285,LOC107565919 coding downstream 168520 1860931 ~ 1864358 (+)
fbxo28 fbxo28,LOC107753723,LOC107742812,LOC107701582,LOC107558225 coding downstream 347071 2039482 ~ 2046270 (+)
degs1 degs1,LOC107753721,LOC107699139,LOC107742811,LOC108412154 coding downstream 362578 2054989 ~ 2059566 (+)
LOC122356501 NA non-coding upstream 10276 1678260 ~ 1679870 (+)
LOC122356499 NA non-coding upstream 14811 1673723 ~ 1675335 (+)
G89931 NA non-coding upstream 24054 1591435 ~ 1666092 (+)
G89942 NA non-coding upstream 55556 1633664 ~ 1634590 (+)
G89815 NA non-coding upstream 127193 1562542 ~ 1562953 (+)
G89974 NA non-coding downstream 24 1692435 ~ 1693121 (+)
G89957 NA non-coding downstream 9167 1701578 ~ 1728151 (+)
G89981 ccdc88a,LOC107570323 non-coding downstream 19534 1711945 ~ 1715884 (+)
G89997 NA non-coding downstream 145568 1837979 ~ 1839659 (+)
LOC122356489 NA non-coding downstream 169060 1861471 ~ 1862276 (+)
LOC122356486 march8,LOC107690179,LOC107582508,LOC107708446 other upstream 76816 1581358 ~ 1613330 (+)
G89846 NA other upstream 220011 1469405 ~ 1470135 (+)
selenou1a fam213aa,fam213a,LOC107690162,LOC107733773,LOC107582522 other upstream 344283 1342096 ~ 1345863 (+)
G89770 LOC107582509,LOC107690188,LOC107747458 other upstream 549951 1139159 ~ 1140195 (+)
comtd1 comtd1,LOC107690183,LOC107582505,LOC107747463,LOC107678519 other upstream 678899 1008268 ~ 1011247 (+)
mpc1 mpc1,LOC107693783,LOC107725004,LOC107565920,LOC107709408,LOC107571070 other downstream 147924 1840335 ~ 1842108 (+)
G90010 LOC107676803 other downstream 179773 1872184 ~ 1872591 (+)
lgi1a lgi1a,lgi3,LOC107565913,LOC107701579,LOC107753733,LOC108260544 other downstream 297461 1989872 ~ 1997310 (+)
tp53bp2a tp53bp2,LOC107582030,LOC107705014,LOC107558217,LOC107742808 other downstream 461011 2153422 ~ 2166028 (+)
cutc cutc other downstream 483598 2176009 ~ 2180829 (+)

Expression


Co-expression Network