G90015 (LOC107709440,LOC107565916,LOC107680287)


Basic Information

Item Value
gene id G90015
gene name LOC107709440,LOC107565916,LOC107680287
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 1901616 ~ 1901893 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU133264
ctTGTCCACAAAGTTGGTTTCCACTACGTTCTGTTTTTCATTCTCATCTGGGCCTTCTATGGTGACAAAGAAGATGTTGATGCCTGACTCTCTGGCCAGACGGGAGGCCTCCTCCACTTTGTCAGTGGGCCAGCCGTCCACCAGGACCACAGCCACGTTGGGCGCCCCACCTCTGTTCCCATTAGCATCACTGAAGAAATGCTTGTTGATGTAGGAGAGGGCCTTTCCTTAAAGGGCCACAGAGCCAGAATCAGTACAAAACAGCTACAGTTCCATCG

Function

NR:

description
PREDICTED: vitrin-like isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133264 True 278 lncRNA 0.52 1 1901616 1901893

Neighbor

gene id symbol gene type direction distance location
irf1a LOC107571076,LOC107725011,LOC107680285,LOC107565919 coding upstream 37258 1860931 ~ 1864358 (+)
foxg1d foxg1,LOC107709474,LOC107680282,LOC107565904,LOC108443822 coding upstream 83524 1815818 ~ 1818092 (+)
LOC122356760 pim3,LOC107732271 coding upstream 131390 1768733 ~ 1770226 (+)
prorsd1 LOC107701441,LOC107571560 coding upstream 216437 1683250 ~ 1685179 (+)
pdzd7a pdzd7a,pdzd7,LOC107690160,LOC107570534,LOC107678494 coding upstream 523663 1357268 ~ 1377953 (+)
fbxo28 fbxo28,LOC107753723,LOC107742812,LOC107701582,LOC107558225 coding downstream 137589 2039482 ~ 2046270 (+)
degs1 degs1,LOC107753721,LOC107699139,LOC107742811,LOC108412154 coding downstream 153096 2054989 ~ 2059566 (+)
wu:fc17b08 LOC107705013,LOC107565911,LOC107699137,LOC107742810,LOC107753730,LOC107753729 coding downstream 174280 2076173 ~ 2094028 (+)
LOC122356476 LOC107582116,LOC107753727,LOC107699114,LOC101886535,LOC107558210,LOC107709369 coding downstream 264727 2166620 ~ 2175433 (+)
LOC122356458 NA coding downstream 284365 2186258 ~ 2195187 (+)
G90013 NA non-coding upstream 24420 1874701 ~ 1877196 (+)
G90011 NA non-coding upstream 28172 1873215 ~ 1873444 (+)
G90009 NA non-coding upstream 29724 1871690 ~ 1871892 (+)
G90006 NA non-coding upstream 32003 1866147 ~ 1869613 (+)
LOC122356489 NA non-coding upstream 39340 1861471 ~ 1862276 (+)
G90016 NA non-coding downstream 1864 1903757 ~ 1904718 (+)
G90017 NA non-coding downstream 3007 1904900 ~ 1905184 (+)
G90018 NA non-coding downstream 3815 1905708 ~ 1906141 (+)
G90019 NA non-coding downstream 4591 1906484 ~ 1906687 (+)
G90021 NA non-coding downstream 7702 1909595 ~ 1909993 (+)
G90010 LOC107676803 other upstream 29025 1872184 ~ 1872591 (+)
mpc1 mpc1,LOC107693783,LOC107725004,LOC107565920,LOC107709408,LOC107571070 other upstream 59508 1840335 ~ 1842108 (+)
LOC122356486 march8,LOC107690179,LOC107582508,LOC107708446 other upstream 288286 1581358 ~ 1613330 (+)
G89846 NA other upstream 431481 1469405 ~ 1470135 (+)
selenou1a fam213aa,fam213a,LOC107690162,LOC107733773,LOC107582522 other upstream 555753 1342096 ~ 1345863 (+)
lgi1a lgi1a,lgi3,LOC107565913,LOC107701579,LOC107753733,LOC108260544 other downstream 87979 1989872 ~ 1997310 (+)
tp53bp2a tp53bp2,LOC107582030,LOC107705014,LOC107558217,LOC107742808 other downstream 251529 2153422 ~ 2166028 (+)
cutc cutc other downstream 274116 2176009 ~ 2180829 (+)
LOC122356772 pim3,LOC107732271 other downstream 362853 2264746 ~ 2284807 (+)
G90230 NA other downstream 568052 2469945 ~ 2470381 (+)

Expression


Co-expression Network