G90031


Basic Information

Item Value
gene id G90031
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 2008967 ~ 2009973 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU133281
TAGTTCTGCTCATCCAGTGTAAAACCCAGCAGGCACTGTGAGGCTGCAGCTGCTCGAGGGGTCTGTGGGTTAGCGGGGTTCAGGGGGGTTTGGGGAATAGGGTCTGTGGCCTGGGAGGATTGGTCTTCATGCGTGACAAATATCTGGGCATTCTGAGGGAAGCAGAGGTAGCCTCCGTAGTGGTTCACGCACTTCATGCCTCCTTTGCAGGCATCAGAGACAAGAACACACTCATCAATATCTTGCATACCTCTTTAATTGGATCATATTCATAGCCTTCTGTGCACTGCTGTGAGGAGGAAAAAACATTGTATAAGAACATTTTACAACCTGCtcagtaatatgcattatttatagtttCATGTAAATACACTTGCTGTATAAGATACAGGCTCTTCCGCCTCCTGAGAAACAGCACCGGCAGCAACTGTGATCACCAGGTAGATTCCCAACATCATGATGCTTCTACACGGGTGAACACAGAACACCTGTACTTACATCACTGCTCAACATGGGACAACATTTCATCTTGCTTTCATTGGCTCAACTCCAGCCAGAGCGCTGCATTCACCTTcctctttgaaaatgtaaacttttaaaaCGCAAATCACAAGTAGCCCTCAAACACCGCTTCAGTTCGATCCAGCAGCCCACATATACTTGAGGGAAACCCACACGAGCACCGAAATATAACGCGTATGATTGCGCGGCTTTTAATCGCATTAATTGTGGCGTTCTTGTAAAACGTCACGGGTGAGCAAAACAAAACGAACAGCtcatttcaaatcatttcatCAAAcacatcagtaaaaaaaaaaaaaaaaactaatattcaCGCAGCGCAGAGAGCGAAAAAGCGGAGCGCGAAAGTCGCCTCAC

Function

GO:

id name namespace
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0006936 muscle contraction biological_process
GO:0006941 striated muscle contraction biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003010 voluntary skeletal muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0031444 slow-twitch skeletal muscle fiber contraction biological_process
GO:0014721 twitch skeletal muscle contraction biological_process
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05416 Viral myocarditis

RNA

RNA id representative length rna type GC content exon number start site end site
TU133281 True 879 lncRNA 0.45 2 2008967 2009973

Neighbor

gene id symbol gene type direction distance location
irf1a LOC107571076,LOC107725011,LOC107680285,LOC107565919 coding upstream 144609 1860931 ~ 1864358 (+)
foxg1d foxg1,LOC107709474,LOC107680282,LOC107565904,LOC108443822 coding upstream 190875 1815818 ~ 1818092 (+)
LOC122356760 pim3,LOC107732271 coding upstream 238741 1768733 ~ 1770226 (+)
prorsd1 LOC107701441,LOC107571560 coding upstream 323788 1683250 ~ 1685179 (+)
pdzd7a pdzd7a,pdzd7,LOC107690160,LOC107570534,LOC107678494 coding upstream 631014 1357268 ~ 1377953 (+)
fbxo28 fbxo28,LOC107753723,LOC107742812,LOC107701582,LOC107558225 coding downstream 29509 2039482 ~ 2046270 (+)
degs1 degs1,LOC107753721,LOC107699139,LOC107742811,LOC108412154 coding downstream 45016 2054989 ~ 2059566 (+)
wu:fc17b08 LOC107705013,LOC107565911,LOC107699137,LOC107742810,LOC107753730,LOC107753729 coding downstream 66200 2076173 ~ 2094028 (+)
LOC122356476 LOC107582116,LOC107753727,LOC107699114,LOC101886535,LOC107558210,LOC107709369 coding downstream 156647 2166620 ~ 2175433 (+)
LOC122356458 NA coding downstream 176285 2186258 ~ 2195187 (+)
G90024 NA non-coding upstream 95249 1912360 ~ 1913718 (+)
G90023 NA non-coding upstream 96665 1911993 ~ 1912302 (+)
G90022 NA non-coding upstream 98725 1910009 ~ 1910242 (+)
G90021 NA non-coding upstream 98974 1909595 ~ 1909993 (+)
G90019 NA non-coding upstream 102280 1906484 ~ 1906687 (+)
LOC122356496 NA non-coding downstream 223 2010196 ~ 2012985 (+)
G90034 heatr5b non-coding downstream 7210 2017183 ~ 2034567 (+)
G90041 heatr5b non-coding downstream 25364 2035337 ~ 2035837 (+)
G90088 NA non-coding downstream 42062 2052035 ~ 2052305 (+)
G90089 NA non-coding downstream 43624 2053597 ~ 2053846 (+)
lgi1a lgi1a,lgi3,LOC107565913,LOC107701579,LOC107753733,LOC108260544 other upstream 11657 1989872 ~ 1997310 (+)
G90010 LOC107676803 other upstream 136376 1872184 ~ 1872591 (+)
mpc1 mpc1,LOC107693783,LOC107725004,LOC107565920,LOC107709408,LOC107571070 other upstream 166859 1840335 ~ 1842108 (+)
LOC122356486 march8,LOC107690179,LOC107582508,LOC107708446 other upstream 395637 1581358 ~ 1613330 (+)
G89846 NA other upstream 538832 1469405 ~ 1470135 (+)
tp53bp2a tp53bp2,LOC107582030,LOC107705014,LOC107558217,LOC107742808 other downstream 143449 2153422 ~ 2166028 (+)
cutc cutc other downstream 166036 2176009 ~ 2180829 (+)
LOC122356772 pim3,LOC107732271 other downstream 254773 2264746 ~ 2284807 (+)
G90230 NA other downstream 459972 2469945 ~ 2470381 (+)
LOC122356072 znf318,LOC107739464,LOC107564219,LOC107728066 other downstream 972586 2982559 ~ 3010641 (+)

Expression


Co-expression Network