G3462


Basic Information

Item Value
gene id G3462
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 5180507 ~ 5182548 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU3857
GTTGTTTTAATGTCTTTATTATGCAAGTATGGTGTGTACACATTCAGCAGCAACACAACACACTGCAGAGGAAATACTTTGAGGGAAGATACAGCATCCATACATGATTGCATTTGAAACGGTAATCACATACACTCACAATTACAAAAACTAAGGCCACTTTTCTGAATAGAAGACTGTACGTTTCACATACGACAGCAGCACGACTTGTTGTCAAGACAGAAGTCACAAACGTACACTTATCATCTAGGCTGTATTTTCATGTGCAGCACATGTAATCGACTCGACATAAACATGTAAGTTTTTACTTTGGTCATTCTGAGATACTGTACGGTATATTTCTAATTTCCTATCCATTTTGTTTGACCTCTGTCCTCTGCTGCACAGTATTTTGGTAAACATTTCTCTCCTCCACTCTTTTTCACTGTTCTCCCTTTACTGGGCCGCTGAGGCCTCTGTTTTCCCCCCGATCGTCACCAACTGTATGAGGCTGCCTGAGGCTGGCCGTCCTGACCCAGTGGCCCAGCTGTGGAAGGTTCTGCGATGTATTCCAGCGGTGTCCAGCTCCCAAAATCTGCGTCAGGCATGAATTTTCTGTTCATTGGTGTATCCAAGGTAACCCTGGAGGATGATGTCATAATGTTGTTATCTTGGTAAAAGATAAAACTGTGGAACAGAGCCTGCAGCGATAGACAAGCCTGGCCTTTTGAAAACACTCACACCTCATACGTTCAGTTAATGCAAACAGACAGCAGTCAAATGTGTATCACGCAGGTCACTAAGAGTACAAATGACAGCAGGCGCTCACACACACAGAGCATTCATTTA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU3857 True 828 lncRNA 0.43 3 5180507 5182548

Neighbor

gene id symbol gene type direction distance location
CI01000000_04986976_04998622 NA coding downstream 181488 4986709 ~ 4999019 (-)
CI01000000_04924131_04926561 NA coding downstream 253741 4924058 ~ 4926766 (-)
CI01000000_04728056_04730605 NA coding downstream 449736 4727845 ~ 4730771 (-)
CI01000000_04597720_04599733 NA coding downstream 580338 4597518 ~ 4600169 (-)
CI01000000_04589952_04595231 PPID coding downstream 584726 4589952 ~ 4595781 (-)
CI01000000_05286804_05288152 NA coding upstream 104240 5286788 ~ 5288214 (-)
CI01000000_05311908_05314253 NA coding upstream 128193 5310741 ~ 5314256 (-)
CI01000000_05380329_05386853 ANXA5A coding upstream 197507 5380055 ~ 5386853 (-)
CI01000000_05409025_05413963 TMEM33.L, TMEM33 coding upstream 225691 5408239 ~ 5414411 (-)
CI01000000_05422567_05424822 CRYBA1L1 coding upstream 239698 5422246 ~ 5425430 (-)
G3457 NA non-coding downstream 36948 5143329 ~ 5143559 (-)
G3426 NA non-coding downstream 126574 5037584 ~ 5053933 (-)
G3129 NA non-coding downstream 207522 4972710 ~ 4972985 (-)
G3119 NA non-coding downstream 216380 4963788 ~ 4964127 (-)
G3072 NA non-coding downstream 271101 4909126 ~ 4909406 (-)
G3464 NA non-coding upstream 356 5182904 ~ 5183272 (-)
G3465 NA non-coding upstream 1674 5184222 ~ 5184594 (-)
G3472 NA non-coding upstream 3077 5185625 ~ 5185840 (-)
G3477 NA non-coding upstream 9295 5191843 ~ 5192046 (-)
G3476 NA non-coding upstream 10127 5192675 ~ 5193151 (-)
G2730 NA other downstream 790355 4386383 ~ 4390152 (-)
CI01000000_04079738_04081018 MIF other downstream 1099390 4078121 ~ 4081117 (-)
G2484 NA other downstream 1606953 3570066 ~ 3573554 (-)
CI01000000_03564077_03564373 NA other downstream 1613416 3562887 ~ 3567571 (-)
CI01000000_03245643_03246684 NA other downstream 1933792 3245134 ~ 3246721 (-)
CI01000000_05465020_05466303 NA other upstream 281510 5464058 ~ 5466516 (-)
G3650 NA other upstream 357915 5540463 ~ 5540881 (-)
G3716 NA other upstream 817859 6000407 ~ 6000769 (-)
G3931 NA other upstream 974465 6157013 ~ 6403525 (-)
CI01000000_10407402_10409508 UBL3B, UBL3.S, UBL3 other upstream 5221780 10407395 ~ 10409950 (-)

Expression


Co-expression Network