G90319 (tuba4l,LOC107655627,LOC107559781,LOC107564211,LOC107706828,LOC107669576)


Basic Information

Item Value
gene id G90319
gene name tuba4l,LOC107655627,LOC107559781,LOC107564211,LOC107706828,LOC107669576
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 2857325 ~ 3204019 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU133713
ttttctgtttaggaaattgagaaatattttattattattaatgatgaaaACGTTTTTTGGGAACATATGTTTTATCATTCTTTATTGAAGTaagcaaaattataaaaattataattataaaagtctacttttgatcaatgtaatgtATCCTTGCAGAAttgaaaaagttatttatttttttttttttttttttttttttttttttttttttttttttttttttGTTTAGatgcttttaaatttatttgctCGTACAAACATTTTGCATAATTAATACTCCTCTTCATCCTCCCCGCCATCCTCAATAGAATCAGCACCGACCTCCTCGTAGTCTTTCTCCAGAGCAGACATGTCCTCTCGTGCCTCCGAAAACTCCCCTTCCTCCATCCCTTCACCCACATACCAGTGCACGAAAGCCCTCTTCGCATACATCAGGTCAAACTTGTGGTCCAGACGGCCCCATGCCTCCGCTATAGCAGTGGTGTTGCTCAGCATGCAGACAGCCCTCTGCACCTTGGCCAGATCCCCTCCCGGTACAACGGTGGGTGGCTGGTAGTTGATTCCAACCTTGAACCCCGTGGGACACCAGTCTACAAACTGAATGGAGCGCCGAGTCTTGATGTTGGCTATGGCGGCGTTCACATCTTTTGGAACCACATCACCACGGTACAGCAGACAGCAGGCCATGTATTTTCCACGCCGAGGGTCGCACTTCACCATCTGGTTTGCCGGCTCAAAGCAGGCGTTGGTTATCTCTGGTACGGAGAGCTGCTCATGGTAGGCCTTCTCAGCGGAAATGATGGGAGAGTAGGTGACCAGCGGGAAGTGGATGCGTGGGTAAGGGACTAGGTTGGTTTGGAATTCTGTAAGGTCCACATTTAGGGCTCCGTCAAAGCGCAGTGAAGCCGTAATGGAGGACACGATCTGGGCTATGAGCCTGTTGAGGTTGGTGTAGGAGGGACGCTCAATGTCAAGGTTTCGCTTGCAGATGTCAAAGATGGCTTCGTTATCCACCATGAAGGAGCAATCGGAGTGCTCCAGGGTCGTGTGTGTTGTAAGGATGGAGTTGTAGGGCTCCACCACAGCGGTACTGACCTGTGGGGCAGGATATACGGAGAACTCCAACTTTGACTTTTACCATAGTCGACAGATAGTCGCTCCATCAGTAGAGATGTGAATCCAGAGCCTGTTCCTCCACCAAAGCTGTGAAAGATCAGGAAGCCCTGCAGACCGGTGCAC
>TU133714
ttttctgtttaggaaattgagaaatattttattattattaatgatgaaaACGTTTTTTGGGAACATATGTTTTATCATTCTTTATTGAAGTaagcaaaattataaaaattataattataaaagtctacttttgatcaatgtaatgtATCCTTGCAGAAttgaaaaagttatttatttttttttttttttttttttttttttttttttttttttttttttttttGTTTAGatgcttttaaatttatttgctCGTACAAACATTTTGCATAATTAATACTCCTCTTCATCCTCCCCGCCATCCTCAATAGAATCAGCACCGACCTCCTCGTAGTCTTTCTCCAGAGCAGACATGTCCTCTCGTGCCTCCGAAAACTCCCCTTCCTCCATCCCTTCACCCACATACCAGTGCACGAAAGCCCTCTTCGCATACATCAGGTCAAACTTGTGGTCCAGACGGCCCCATGCCTCCGCTATAGCAGTGGTGTTGCTCAGCATGCAGACAGCCCTCTGCACCTTGGCCAGATCCCCTCCCGGTACAACGGTGGGTGGCTGGTAGTTGATTCCAACCTTGAACCCCGTGGGACACCAGTCTACAAACTGAATGGAGCGCCGAGTCTTGATGTTGGCTATGGCGGCGTTCACATCTTTTGGAACCACATCACCACGGTACAGCAGACAGCAGGCCATGTATTTTCCACGCCGAGGGTCGCACTTCACCATCTGGTTTGCCGGCTCAAAGCAGGCGTTGGTTATCTCTGGTACGGAGAGCTGCTCATGGTAGGCCTTCTCAGCGGAAATGATGGGAGAGTAGGTGACCAGCGGGAAGTGGATGCGTGGGTAAGGGACTAGGTTGGTTTGGAATTCTGTAAGGAAATGATGGGAGAGTAGGTGACCAGCGGGAAGTGGATGCGTGGGTAAGGGACTAGGTTGGTTTGGAATTCTGTAAGGTCCACATTTAGGGCTCCGTCAAAGCGCAGTGAAGCCGTAATGGAGGACACGATCTGGGCTATGAGCCTGTTGAGGTTGGTGTAGGAGGGACGCTCAATGTCAAGGTTTCGCTTGCAGATGTCAAAGATGGCTTCGTTATCCACCATGAAGGAGCAATCGGAGTGCTCCAGGGTCGTGTGTGTTGTAAGGATGGAGTTGTAGGGCTCCACCACAGCGGTACTGACCTGTGGGGCAGGATATACGGAGAACTCCAACTTTGACTTTTTACCATAGTCGACAGATAGTCGCTCCATCAGTAGAGATGTGAATCCAGAGCCTGTTCCTCCACCAAAGCTGTGAAAGATCAGGAAGCCCTGCAGACCGGTGCACTGGTCCGCCTATAGAGACGGAAGTCAGGGAGGAGGgggaagacaaaaac

Function

symbol description
tuba4l Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Orthologous to human TUBAL3 (tubulin alpha like 3).

NR:

description
PREDICTED: tubulin alpha-8 chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133713 False 1239 lncRNA 0.46 3 2857325 2954253
TU133714 True 1366 lncRNA 0.46 4 2857325 3204019

Neighbor

gene id symbol gene type direction distance location
ppm1g ppm1g,LOC107660231,LOC107717838,LOC107754752,LOC107702697 coding upstream 11065 2839850 ~ 2846260 (+)
LOC122356205 LOC107719934,LOC107699158,LOC107597732 coding upstream 355004 2500682 ~ 2502321 (+)
polh polh coding upstream 369190 2482202 ~ 2488135 (+)
tmem14a zgc:163080,LOC107751370,LOC107701972,LOC107579763,LOC107597714 coding upstream 378476 2477593 ~ 2478849 (+)
LOC122356456 LOC107710218 coding upstream 406912 2446050 ~ 2450413 (+)
LOC122356783 LOC107655626,LOC107728064,LOC107564218,LOC107739478,LOC107706823 coding downstream 5773 3209792 ~ 3227749 (+)
LOC122356787 LOC107739478,LOC107564218 coding downstream 25094 3229113 ~ 3231423 (+)
znf318 znf318,LOC107739464,LOC107564219,LOC107728066 coding downstream 31024 3235043 ~ 3246109 (+)
tjap1 tjap1,LOC107728071,LOC107559778 coding downstream 116410 3320429 ~ 3398358 (+)
ncoa4 LOC107739471,LOC107669570,LOC107696383,LOC107728073 coding downstream 213515 3417534 ~ 3426736 (+)
G90292 NA non-coding upstream 227718 2629192 ~ 2629607 (+)
G90290 NA non-coding upstream 232042 2624938 ~ 2625283 (+)
G90232 NA non-coding upstream 375550 2481369 ~ 2481775 (+)
G90220 NA non-coding upstream 419816 2437106 ~ 2437509 (+)
G90214 NA non-coding upstream 534361 2322609 ~ 2322964 (+)
LOC122356226 NA non-coding downstream 42244 3246263 ~ 3247132 (+)
G90365 NA non-coding downstream 111644 3315663 ~ 3315908 (+)
G90373 lrrc73,LOC107696385,LOC107728077,LOC107739469 non-coding downstream 197945 3401964 ~ 3403754 (+)
G90378 NA non-coding downstream 246154 3450173 ~ 3450485 (+)
G90381 NA non-coding downstream 265428 3469447 ~ 3489791 (+)
G90230 NA other upstream 386944 2469945 ~ 2470381 (+)
LOC122356772 pim3,LOC107732271 other upstream 572518 2264746 ~ 2284807 (+)
cutc cutc other upstream 676496 2176009 ~ 2180829 (+)
tp53bp2a tp53bp2,LOC107582030,LOC107705014,LOC107558217,LOC107742808 other upstream 691297 2153422 ~ 2166028 (+)
lgi1a lgi1a,lgi3,LOC107565913,LOC107701579,LOC107753733,LOC108260544 other upstream 860015 1989872 ~ 1997310 (+)
LOC122356782 NA other downstream 3392 3207411 ~ 3209753 (+)
G90343 ppp2r5d,LOC107696374,LOC107559765 other downstream 67306 3271325 ~ 3274372 (+)
G90348 dnph1 other downstream 73818 3277837 ~ 3280997 (+)
G90377 NA other downstream 245382 3449401 ~ 3450017 (+)
prkn park2,LOC107739476,LOC107669573,LOC107696378 other downstream 416387 3620406 ~ 3713763 (+)

Expression


Co-expression Network