dlk2 (dlk2,LOC107669558,LOC107696386,LOC107559779,LOC107728069)


Basic Information

Item Value
gene id dlk2
gene name dlk2,LOC107669558,LOC107696386,LOC107559779,LOC107728069
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 3281337 ~ 3298549 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU133949
CAGAGAGCAGCCGTGTCAGAATGGAGCTACTTGCGTCTTGAATGACTCTGGGGATTACAGCTGCTTGTGTCCCGAAGGCTTTCATGGGCGGGACTGTGAGCTGAAAACAGGACCTTGCCAAAAGACCAAGTGCCCCTGCAAGAATGGTGGTCTCTGCGAGGATCTGGGTGGTTACGCTCCAGAACTGTCTTGTCGATGCCTGGCCGGCTTCACGGGGCCCCGCTGCGAGACCAACATGGACGACTGCCTGATGCGCCCCTGTGCCAACGGTGCCACCTGTTTGGATGGCGTGAACCGTTTTTCCTGTCTGTGCCCTGCGGGTTTCACTGGCCGTTTCTGCACCATCAACCTGGACGACTGCGCCGGCCAGCCCTGCCTCAACGGAGGACGCTGTATAGACCGAGTCTCCA
>XM_043255951.1
TTCAAATGCTCCACAGGCCTGATATTGTTGAGATAATCTGCTGAAAACTGATCCTCTCCACACCATCGCCTGCAGAGGAACGTGTGGGCACATCAGCCCCCAACATCAGGAGCCTTGTCTGTCGCTACAGCAACAGCAAAAAGCCTTCCATTACCGCTACGGCATTCGCTAAGGCTTTCTGCCAGACTGCGCTTCTCTGATAACAAGACGGCAAAGTGCATGCAATGCGCTCTCAATCAGATGTGTCCAGAAACTGTCTGAAACAACAAGACCTGTCGGTGATATACCAAAAAAGTTGCTGAGGGTTTGACAAAACCAAACAAGCATGCGATGTCTGTACTGTATCTTGCCGTACCCGCTCTAGCGTGATGGATTGGTCTTTGGGCTGTGTGAGATGGTGGTATTGAGGGAAGCCTGTCTCTTTAAGAGCCAGTCCTTGGGCAGGTTGGCTTGTTGAGTGGGGAGGTGGAACCTTGTCTGCTTCTACAAACAAGCATTTCTATCAACAAAACGTGTCTCACTAGCGAGCTGATCTTGAGGGTGTGCATATACGAGAGAGCGAATATTGCTTTCACGGTAGTTTCTGATGCCGTCTGTGTGATATGTGAGTCCCGTTTTATCAGCACCTGAGGTCTGCAACGCTCTGCTGGAGGGGGCCACCAACAGCTCAGATTGCCCTGCACCATGAAACTCGCTGTAGTTCTGCTGCTCTGTGCCTGCTGTCTGCTTTTTCAACACAACTGTGAAGCCCAagTTTCATTTTTCTCAGTAGATACATCTCCGACACCCTCGGCCAGTAACTGCACGTGTGAACTCGGCCATGGAAAGTGTGCTGAAAACGGTGACTGCAGGTGTGACCCAGGATGGGGTGGACCGCGGTGTGAAGACTGTGTGCGAATGCCCGGATGTGTCCATGGCACCTGCCACCAGCCCTGGCAGTGTACGTGCATGGACGGGTGGGCAGGCCGATTCTGTGATAAAGATATTTACGCAGTGCTCAGAGAGCAGCCGTGTCAGAATGGAGCTACTTGCGTCTTGAATGACTCTGGGGATTACAGCTGCTTGTGTCCCGAAGGCTTTCATGGGCGGGACTGTGAGCTGAAAACAGGACCTTGCCAAAAGACCAAGTGAGatGTCCCCTGCAAGAATGGTGGTCTCTGCGAGGATCTGGGTGGTTACGCTCCAGAACTGTCTTGTCGATGCCTGGCCGGCTTCACGGGGCCCCGCTGCGAGACCAACATGGACGACTGCCTGATGCGCCCCTGTGCCAACGGTGCCACCTGTTTGGATGGCGTGAACCGTTTTTCCTGTCTGTGCCCTGCGGGTTTCACTGGCCGTTTCTGCACCATCAACCTGGACGACTGCGCCGGCCAGCCCTGCCTCAACGGAGGACGCTGTATAGACCGAGTCTCCACCTTCCAGTGCTTCTGCTCAGGGTTCACTGGAAGAACTTGTGAGGTTCCGTCTGGGAGTCAGGGCCTCAAAGTCACGCTGAGCAAACCTGTCCCAGTCAACCGCTCCCAGGGGACCACTCCCAGCGGGGATGAAAGACGCTCGTTCAAAATCTCAGTGGTGACTCAGCATGGGGCAGAAGGGCTGTCAGAGCTGCAGCTTATCATCCTGCTGGTGCTGGCTATGACTTTGGCCGTGGTGGCGCTAACAGCTGGCCTGGTGCTGCGTGGACACTGCCAGGACCAGTCGGCTCGCTGTCAGTGCAGACCGGCCCCAGCTCACCATCGCCCATTCCACCGATGTAGGACAAACTCTGTGCCTGCGCAACAGGAATGCAAGATCAGCTTCCTCCAGTCCCCGGCTCCAGCTGAGCTAGAGAAGAAGAGGCTGAACACCGACATTGTTTAGCCGCAGAGATCGCGCAGCTGCTCTTGTTGAAGTAAAAGGCCACTTCTGACCTCTCAAAAGATAAAGACGGAACTCATGAATCTGAGAGTCCGTCGCTGAAAGCAGGTGGCCATTAAAGAAcccatttttatttgatcaaagatgCCACAAGTGAGGCATGTACTGCTAAGGGAACATTAAATCAGAGTCAACATGAAAACAGTAATGCTCGTACCTGGTCAAGGAACTTAAGATAAGAAATGCTTGTCTGTGTAATATTAAATCAGAAATTATGTATTATGCCTCTGAAAACCATTTTGCTCTCACCAAGCAATATTTTTTATGGAAACCCTAAACTGTGGCGTGTCTTAGTGCCTTCCAGAATCTATTTTCTCCCCCAATTTTATgattacaaatttttttattatgaaaatgaaaacattctttctgttttgtttttttggtaattttaataacattcaAATCTGTCTGTTAATATTATTGATTAGACCTAAGCTTACCTGAATTGTATAAAaacaagattaataaataataattaaaaaaaatacatattaattaataatatatattaatgcattaactattgTTAACCAATGGGGTCTTTAAAGTTTCATGAAAATTAAATCCATAAATCAAGATAAttattttagagaaaataaactaattttcaTTCAGAGGGCACTTTTCAATATCCATCAGTTAAATTggttcaaatttaaaaacacaccttaccccttttctcattttaatagaCTGTATCACTTGGGAATACAGTAGGTCACATTATGAAGGTAAGGTGGGTTGCAGATGCTGTTTCATATTGACTTCAAGGTACACACAGCCTGGGAACCACTGTATTTGTTGATATGACGTCTGTACTCGAAGAGTAAACAGTAGCACCAATGAGCCGCGTGTAAAATAAAGCGAAGCACTTAACCACACATATATCAAAACTTCCATTGTGTGATACAGtagtactgtatgtatataacCAAGCCATAATACTAAAAGCGCTTTTAATTTCAGGTTTAAGTGTTCACTTTCGCCAAGTGttcaaactgtaaaatatttcaacgTGAGTATATGCCAAGTAAGTTTTATTCTTTGAGTATTTGCTTTATGAACGTTTTTAAACGACAACGTAACGTTCCCTTTAACACTGTAATGATGCTCTTTTAAGCGGTATAGTAATATCAATTTCATGGGAAACGATTTTTGTGATACATAACGCATTAACAACAGtattgtgtaaatataatttatttatgtaatttattggtgaaatgtatatttgttttttatcgtaatgtgttatttttatacagatCTGTGTGCATTAAAGTTTTTAACTGTGTAGTAA

Function

symbol description
dlk2 Predicted to enable Notch binding activity. Acts upstream of or within negative regulation of Notch signaling pathway; negative regulation of angiogenesis; and vasculature development. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human DLK2 (delta like non-canonical Notch ligand 2).

NR:

description
unnamed protein product, partial

GO: NA

KEGG:

id description
K24462 DLK2, EGFL9; protein delta homolog 2

RNA

RNA id representative length rna type GC content exon number start site end site
TU133949 False 410 lncRNA 0.59 2 3283179 3285406
XM_043255951.1 True 3220 mRNA 0.45 9 3281337 3298549

Neighbor

gene id symbol gene type direction distance location
mea1 mea1,LOC107739467,LOC107696388,LOC107728068,LOC107564221 coding downstream 2956 3276168 ~ 3278381 (-)
LOC122356068 dlk2,LOC107696386,LOC107669558,LOC107559779,LOC107728069 coding downstream 208943 3056748 ~ 3072394 (-)
LOC122356071 mea1,LOC107739467,LOC107696388,LOC107728068,LOC107564221 coding downstream 228509 3050548 ~ 3052828 (-)
tuba4l tuba4l,LOC107669576,LOC107706828,LOC107564211,LOC107655627,LOC107559781,LOC108256914 coding downstream 325885 2953239 ~ 2955452 (-)
LOC122356237 syndig1,LOC107564210,LOC107702699,LOC107559783,LOC107660247,LOC107728059 coding downstream 367821 2891387 ~ 2913516 (-)
lrrc73 lrrc73,LOC107728077,LOC107696385 coding upstream 103388 3401937 ~ 3409645 (-)
yipf3 yipf3,LOC107696384 coding upstream 113782 3412331 ~ 3416932 (-)
LOC122356548 qki,LOC107739475,LOC107559772,LOC107696379,LOC107669572 coding upstream 156193 3454742 ~ 3467057 (-)
qkib qki,LOC107696379,LOC107559772 coding upstream 184409 3482958 ~ 3543676 (-)
prph2b LOC107739477,LOC107586467,LOC107578331,LOC107590000,LOC107669578,LOC107728796,LOC107696376 coding upstream 463284 3761833 ~ 3764601 (-)
G90447 NA non-coding downstream 38695 3015179 ~ 3242642 (-)
G90432 NA non-coding downstream 80238 2950298 ~ 3201099 (-)
G90431 NA non-coding downstream 86595 2943710 ~ 3194742 (-)
G90459 NA non-coding downstream 88035 3191991 ~ 3193302 (-)
G90454 NA non-coding downstream 102777 3176618 ~ 3178560 (-)
G90482 NA non-coding upstream 71616 3370165 ~ 3401066 (-)
G90504 NA non-coding upstream 151875 3450424 ~ 3450733 (-)
G90505 NA non-coding upstream 152445 3450994 ~ 3451413 (-)
LOC122356977 NA non-coding upstream 270067 3568616 ~ 3578736 (-)
G90533 NA non-coding upstream 412847 3711396 ~ 3712539 (-)
G90445 znf318,LOC107739464,LOC107655625,LOC107728066,LOC107559766 other downstream 36441 2990418 ~ 3244896 (-)
G90311 polh other downstream 654180 2626328 ~ 2627157 (-)
G90304 NA other downstream 696006 2584196 ~ 2585331 (-)
G90161 tp53bp2,LOC107582030,LOC107705014,LOC107742808 other downstream 1036259 2151837 ~ 2245078 (-)
LOC122356758 ccdc88a,LOC107571560,LOC107701441,LOC107570323,LOC107695193 other downstream 1588983 1684449 ~ 1692354 (-)
timm23b timm23b,timm23a,LOC107565600,LOC107669571,LOC107739474,LOC108263229,LOC108426535 other upstream 124204 3422753 ~ 3435580 (-)
wu:fj16a03 NA other upstream 653214 3951763 ~ 3955955 (-)
hcar1-3 LOC107590023,LOC107678489,LOC107707144,LOC107699282,LOC107586503,LOC107736563 other upstream 754194 4052743 ~ 4055413 (-)
LOC122356061 LOC107699307,LOC107586507,LOC107708387,LOC108442385,LOC108263686,LOC107727357,LOC106576682,LOC104955882 other upstream 1374417 4672966 ~ 4689168 (-)
col13a1 col13a1,LOC107678564,LOC107708413,LOC107589579,LOC107727372,LOC107586491 other upstream 1392333 4690882 ~ 4779732 (-)

Expression


Co-expression Network