G90459


Basic Information

Item Value
gene id G90459
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 3191991 ~ 3193302 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU133957
GTAATGAGTAATCTGGtgattattttgatgattaATAAGCAAACACCCCATGCAAAACAATCCATACTTTACCATAAACACTAAATTGTCTATATGCATCTCCTTCTCATTCTTCATGATCTGCACAATGAGACAGTAGATGTagttcctcttcctctctaGCGTGAGCGCAGCATCTTCATCCACATTCAGGTAGGTCTGCTTGGGAAGCAGGAAATGGTAACCGTGTCGTTCTGAGCTCTGTGAGAGCGCGTCTTCTTGTTCAGTCTCAGGACccCTTTCATGGGGTCCTGGCTGGAGCCGGTGTGAGTGAGAACCCCTTTCTCTGCAGTGAGAGGTTTGAGGGCATGGCTCATCATGGCTGGAGAGAGACCCGTGGCCTGCTGCAGCATCTCCACGTTCACGTC

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG:

id description
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport
ko03030 DNA replication
ko03430 Mismatch repair

RNA

RNA id representative length rna type GC content exon number start site end site
TU133957 True 407 lncRNA 0.48 2 3191991 3193302

Neighbor

gene id symbol gene type direction distance location
LOC122356068 dlk2,LOC107696386,LOC107669558,LOC107559779,LOC107728069 coding downstream 119597 3056748 ~ 3072394 (-)
LOC122356071 mea1,LOC107739467,LOC107696388,LOC107728068,LOC107564221 coding downstream 139163 3050548 ~ 3052828 (-)
tuba4l tuba4l,LOC107669576,LOC107706828,LOC107564211,LOC107655627,LOC107559781,LOC108256914 coding downstream 236539 2953239 ~ 2955452 (-)
LOC122356237 syndig1,LOC107564210,LOC107702699,LOC107559783,LOC107660247,LOC107728059 coding downstream 278475 2891387 ~ 2913516 (-)
LOC122356239 LOC107702675,LOC107754747,LOC107564209,LOC107660246,LOC107559771,LOC107754739 coding downstream 326166 2862008 ~ 2865825 (-)
mea1 mea1,LOC107739467,LOC107696388,LOC107728068,LOC107564221 coding upstream 82866 3276168 ~ 3278381 (-)
lrrc73 lrrc73,LOC107728077,LOC107696385 coding upstream 208635 3401937 ~ 3409645 (-)
yipf3 yipf3,LOC107696384 coding upstream 219029 3412331 ~ 3416932 (-)
LOC122356548 qki,LOC107739475,LOC107559772,LOC107696379,LOC107669572 coding upstream 261440 3454742 ~ 3467057 (-)
qkib qki,LOC107696379,LOC107559772 coding upstream 289656 3482958 ~ 3543676 (-)
G90454 NA non-coding downstream 13431 3176618 ~ 3178560 (-)
G90441 znf318,LOC107739464,LOC107564219,LOC107728066 non-coding downstream 178255 2985936 ~ 3013736 (-)
G90437 LOC107739478,LOC107564218 non-coding downstream 214295 2974996 ~ 2977696 (-)
G90408 NA non-coding downstream 294523 2897038 ~ 2897468 (-)
G90312 NA non-coding downstream 566718 2624904 ~ 2625273 (-)
G90482 NA non-coding upstream 176863 3370165 ~ 3401066 (-)
G90504 NA non-coding upstream 257122 3450424 ~ 3450733 (-)
G90505 NA non-coding upstream 257692 3450994 ~ 3451413 (-)
LOC122356977 NA non-coding upstream 375314 3568616 ~ 3578736 (-)
G90533 NA non-coding upstream 518094 3711396 ~ 3712539 (-)
G90311 polh other downstream 564834 2626328 ~ 2627157 (-)
G90304 NA other downstream 606660 2584196 ~ 2585331 (-)
G90161 tp53bp2,LOC107582030,LOC107705014,LOC107742808 other downstream 946913 2151837 ~ 2245078 (-)
LOC122356758 ccdc88a,LOC107571560,LOC107701441,LOC107570323,LOC107695193 other downstream 1499637 1684449 ~ 1692354 (-)
LOC122356439 LOC107747448,LOC107690165,LOC107678593,LOC107582517,LOC107576986,LOC107708380 other downstream 1634944 1554230 ~ 1557047 (-)
dlk2 dlk2,LOC107669558,LOC107696386,LOC107559779,LOC107728069 other upstream 88035 3281337 ~ 3298549 (-)
timm23b timm23b,timm23a,LOC107565600,LOC107669571,LOC107739474,LOC108263229,LOC108426535 other upstream 229451 3422753 ~ 3435580 (-)
wu:fj16a03 NA other upstream 758461 3951763 ~ 3955955 (-)
hcar1-3 LOC107590023,LOC107678489,LOC107707144,LOC107699282,LOC107586503,LOC107736563 other upstream 859441 4052743 ~ 4055413 (-)
LOC122356061 LOC107699307,LOC107586507,LOC107708387,LOC108442385,LOC108263686,LOC107727357,LOC106576682,LOC104955882 other upstream 1479664 4672966 ~ 4689168 (-)

Expression


Co-expression Network